Wall clock time and date at job start Tue Mar 31 2020 12:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48497 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46785 * 299.99641 * 3 2 1 6 6 H 1.48498 * 109.47515 * 59.99119 * 3 2 1 7 7 C 1.37882 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46933 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47014 * 180.02562 * 11 10 9 13 13 C 1.38010 * 119.99887 * 179.97438 * 12 11 10 14 14 N 1.33070 * 120.03006 * 0.02562 * 13 12 11 15 15 C 1.32262 * 120.08694 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 119.92312 * 179.97438 * 15 14 13 17 17 N 1.32324 * 120.15239 * 0.02562 * 15 14 13 18 18 C 1.33102 * 120.06271 * 359.97438 * 17 15 14 19 19 C 1.48266 * 120.04376 * 180.02562 * 18 17 15 20 20 C 1.39400 * 120.12768 * 359.97438 * 19 18 17 21 21 C 1.37998 * 119.87388 * 179.97438 * 20 19 18 22 22 C 1.38342 * 120.12652 * 0.02562 * 21 20 19 23 23 C 1.38327 * 120.25412 * 0.27554 * 22 21 20 24 24 C 1.38009 * 120.13032 * 359.44544 * 23 22 21 25 25 N 1.32873 * 120.03103 * 180.27130 * 13 12 11 26 26 H 0.97000 * 119.99937 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47293 * 59.99309 * 9 7 2 28 28 H 1.08997 * 109.46875 * 299.99791 * 9 7 2 29 29 H 1.08995 * 109.47595 * 60.00214 * 10 9 7 30 30 H 1.08997 * 109.47462 * 299.99729 * 10 9 7 31 31 H 1.09000 * 109.47375 * 59.99497 * 11 10 9 32 32 H 1.09006 * 109.46549 * 299.99759 * 11 10 9 33 33 H 0.97000 * 120.00410 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.06226 * 0.02562 * 20 19 18 35 35 H 1.08000 * 119.94047 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.86974 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.93963 * 179.69967 * 23 22 21 38 38 H 1.07992 * 120.06617 * 180.27406 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9724 -7.4018 0.0006 14 7 0.6643 -7.6456 -0.0003 15 6 0.2222 -8.8922 0.0003 16 17 -1.4853 -9.2055 -0.0003 17 7 1.0784 -9.9011 0.0024 18 6 2.3882 -9.6640 0.0033 19 6 3.3472 -10.7948 0.0051 20 6 2.8803 -12.1082 0.0063 21 6 3.7775 -13.1567 0.0074 22 6 5.1381 -12.9063 0.0079 23 6 5.6072 -11.6050 0.0130 24 6 4.7193 -10.5485 0.0061 25 7 2.8354 -8.4121 0.0066 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 0.8540 -5.0446 -0.8903 32 1 0.8535 -5.0450 0.8897 33 1 3.3861 -5.9234 0.0008 34 1 1.8183 -12.3049 0.0055 35 1 3.4169 -14.1747 0.0088 36 1 5.8366 -13.7300 0.0092 37 1 6.6704 -11.4153 0.0182 38 1 5.0867 -9.5330 0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:39 Heat of formation + Delta-G solvation = 77.324143 kcal Electronic energy + Delta-G solvation = -22111.913104 eV Core-core repulsion = 18594.256226 eV Total energy + Delta-G solvation = -3517.656878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76002 -39.31175 -37.38468 -36.88621 -34.36717 -34.10465 -32.78882 -31.31137 -31.01912 -30.81901 -26.92084 -25.52880 -24.43929 -23.06944 -22.64477 -21.69957 -20.61210 -18.84954 -18.46765 -17.02112 -16.40048 -16.20992 -15.88689 -15.57106 -14.91760 -14.76910 -14.67291 -14.45713 -14.25028 -13.88419 -13.70347 -13.36108 -12.95300 -12.37016 -12.18019 -11.91437 -11.79043 -11.65775 -11.40991 -11.35286 -10.93039 -10.83905 -10.68995 -10.60255 -9.93130 -9.92295 -9.79496 -9.55171 -9.26482 -9.17835 -9.09181 -8.59521 -8.42000 -6.06476 -4.09659 0.10413 0.80303 1.08368 1.09857 1.47309 2.63867 3.27314 3.31783 3.33959 3.35130 3.38569 3.81549 4.06885 4.31359 4.41532 4.65009 4.66106 4.80695 5.12718 5.23232 5.29647 5.38428 5.51924 5.60794 5.63301 5.71857 5.98381 6.03667 6.08870 6.16634 6.23696 6.39285 6.47221 6.53971 6.59358 6.86931 6.96266 7.34693 7.57376 7.68358 7.91632 8.12335 8.32274 8.96879 9.54916 11.04752 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002392 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.265152 B =11701.673139 C =13336.188806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.125 3.875 12 N -0.665 5.665 13 C 0.617 3.383 14 N -0.591 5.591 15 C 0.451 3.549 16 Cl 0.037 6.963 17 N -0.588 5.588 18 C 0.458 3.542 19 C -0.055 4.055 20 C -0.060 4.060 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.134 4.134 24 C -0.060 4.060 25 N -0.600 5.600 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.419 0.581 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -27.017 0.003 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.160 4.160 11 C 0.002 3.998 12 N -0.300 5.300 13 C 0.253 3.747 14 N -0.325 5.325 15 C 0.146 3.854 16 Cl 0.065 6.935 17 N -0.318 5.318 18 C 0.184 3.816 19 C -0.057 4.057 20 C -0.080 4.080 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.152 4.152 24 C -0.080 4.080 25 N -0.330 5.330 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.258 0.742 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.218 -26.583 0.009 27.300 hybrid contribution 0.442 1.135 -0.003 1.218 sum 6.660 -25.448 0.006 26.305 Atomic orbital electron populations 1.69969 1.06049 1.26652 1.50500 1.25030 0.94873 0.99351 0.95217 0.86520 0.80051 0.83693 0.77631 1.19750 1.20971 1.20975 1.21217 0.93045 0.90840 1.51007 0.92557 1.19021 0.93745 0.90665 0.97787 1.21937 0.99960 0.92897 1.01230 1.21881 0.91319 0.83812 1.02747 1.44761 1.11060 1.00211 1.73944 1.19254 0.83610 0.87437 0.84445 1.68029 1.15787 1.22931 1.25704 1.22799 0.90118 0.84635 0.87803 1.98457 1.04402 1.95038 1.95578 1.68461 1.02864 1.35754 1.24768 1.21225 0.87043 0.89187 0.84163 1.17974 0.91211 0.89914 1.06624 1.21375 1.01096 0.90784 0.94778 1.21144 0.93140 0.99181 1.01762 1.21402 0.95799 0.97034 0.96984 1.21151 0.99976 0.92388 1.01670 1.21377 0.91430 1.00467 0.94736 1.68536 1.38929 0.99551 1.26031 0.92933 0.96150 0.96140 0.92463 0.92470 0.91014 0.91028 0.74243 0.84215 0.85303 0.85645 0.85285 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 2.06 5.68 -4.04 -0.02 2.03 16 12 N -0.67 -9.67 5.69 -62.18 -0.35 -10.02 16 13 C 0.62 9.56 8.48 -322.15 -2.73 6.83 16 14 N -0.59 -9.53 9.70 -12.42 -0.12 -9.65 16 15 C 0.45 6.65 8.25 -91.30 -0.75 5.90 16 16 Cl 0.04 0.46 29.30 -51.86 -1.52 -1.06 16 17 N -0.59 -8.29 9.59 -9.60 -0.09 -8.38 16 18 C 0.46 6.29 7.59 -156.22 -1.19 5.10 16 19 C -0.05 -0.61 5.88 -104.91 -0.62 -1.23 16 20 C -0.06 -0.56 9.58 -39.24 -0.38 -0.94 16 21 C -0.13 -0.96 10.03 -39.63 -0.40 -1.36 16 22 C -0.09 -0.61 10.04 -39.51 -0.40 -1.01 16 23 C -0.13 -0.99 10.03 -39.63 -0.40 -1.39 16 24 C -0.06 -0.58 9.58 -39.23 -0.38 -0.95 16 25 N -0.60 -8.67 9.64 -11.91 -0.11 -8.78 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.42 5.29 8.59 -40.82 -0.35 4.94 16 34 H 0.14 1.26 7.55 -52.49 -0.40 0.87 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.14 1.33 7.55 -52.49 -0.40 0.93 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -30.64 350.79 -13.63 -44.27 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.49 Total: -0.19 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -7.94 Total: -2.08 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.06 Total: -62.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.52 Total: -1.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.64 -13.63 -44.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.592 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds