Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48497 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46785 * 299.99641 * 3 2 1 6 6 H 1.48498 * 109.47515 * 59.99119 * 3 2 1 7 7 C 1.37882 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46933 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47014 * 180.02562 * 11 10 9 13 13 C 1.38010 * 119.99887 * 179.97438 * 12 11 10 14 14 N 1.33070 * 120.03006 * 0.02562 * 13 12 11 15 15 C 1.32262 * 120.08694 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 119.92312 * 179.97438 * 15 14 13 17 17 N 1.32324 * 120.15239 * 0.02562 * 15 14 13 18 18 C 1.33102 * 120.06271 * 359.97438 * 17 15 14 19 19 C 1.48266 * 120.04376 * 180.02562 * 18 17 15 20 20 C 1.39400 * 120.12768 * 359.97438 * 19 18 17 21 21 C 1.37998 * 119.87388 * 179.97438 * 20 19 18 22 22 C 1.38342 * 120.12652 * 0.02562 * 21 20 19 23 23 C 1.38327 * 120.25412 * 0.27554 * 22 21 20 24 24 C 1.38009 * 120.13032 * 359.44544 * 23 22 21 25 25 N 1.32873 * 120.03103 * 180.27130 * 13 12 11 26 26 H 0.97000 * 119.99937 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47293 * 59.99309 * 9 7 2 28 28 H 1.08997 * 109.46875 * 299.99791 * 9 7 2 29 29 H 1.08995 * 109.47595 * 60.00214 * 10 9 7 30 30 H 1.08997 * 109.47462 * 299.99729 * 10 9 7 31 31 H 1.09000 * 109.47375 * 59.99497 * 11 10 9 32 32 H 1.09006 * 109.46549 * 299.99759 * 11 10 9 33 33 H 0.97000 * 120.00410 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.06226 * 0.02562 * 20 19 18 35 35 H 1.08000 * 119.94047 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.86974 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.93963 * 179.69967 * 23 22 21 38 38 H 1.07992 * 120.06617 * 180.27406 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9724 -7.4018 0.0006 14 7 0.6643 -7.6456 -0.0003 15 6 0.2222 -8.8922 0.0003 16 17 -1.4853 -9.2055 -0.0003 17 7 1.0784 -9.9011 0.0024 18 6 2.3882 -9.6640 0.0033 19 6 3.3472 -10.7948 0.0051 20 6 2.8803 -12.1082 0.0063 21 6 3.7775 -13.1567 0.0074 22 6 5.1381 -12.9063 0.0079 23 6 5.6072 -11.6050 0.0130 24 6 4.7193 -10.5485 0.0061 25 7 2.8354 -8.4121 0.0066 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 0.8540 -5.0446 -0.8903 32 1 0.8535 -5.0450 0.8897 33 1 3.3861 -5.9234 0.0008 34 1 1.8183 -12.3049 0.0055 35 1 3.4169 -14.1747 0.0088 36 1 5.8366 -13.7300 0.0092 37 1 6.6704 -11.4153 0.0182 38 1 5.0867 -9.5330 0.0056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = 63.361881 kcal Electronic energy + Delta-G solvation = -22112.518553 eV Core-core repulsion = 18594.256226 eV Total energy + Delta-G solvation = -3518.262327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.85062 -39.98457 -38.52991 -38.05164 -35.92547 -35.24225 -34.39824 -32.58767 -31.81487 -31.77487 -28.63849 -26.56012 -25.74958 -24.55064 -23.33618 -22.59391 -22.25976 -19.98700 -19.50391 -18.47697 -17.79964 -17.36748 -16.88473 -16.53063 -16.37598 -16.21402 -15.90160 -15.47943 -15.42435 -14.62137 -14.32150 -14.31350 -14.29462 -14.16468 -13.76062 -13.39506 -12.87065 -12.74904 -12.58813 -12.51196 -12.38454 -12.29945 -12.01627 -11.78569 -11.62836 -11.53588 -11.20862 -11.00415 -10.92241 -10.56335 -9.87866 -9.82246 -9.77981 -8.20384 -6.31131 -0.83481 -0.31674 0.00718 0.48968 0.64313 1.40896 1.41099 1.46374 1.54492 2.32298 2.41238 2.44773 2.96485 2.98540 3.13744 3.27791 4.03621 4.05900 4.11922 4.17086 4.23648 4.43326 4.50865 4.55868 4.59922 4.86380 4.90414 4.98984 5.05338 5.12374 5.14104 5.22570 5.50040 5.52740 5.55123 5.58861 5.69593 5.70856 5.83618 6.00538 6.22050 6.24296 6.86059 7.00329 7.38262 8.91658 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.002392 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.265152 B =11701.673139 C =13336.188806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.104 4.104 11 C 0.144 3.856 12 N -0.659 5.659 13 C 0.608 3.392 14 N -0.615 5.615 15 C 0.441 3.559 16 Cl 0.055 6.945 17 N -0.589 5.589 18 C 0.451 3.549 19 C -0.084 4.084 20 C -0.068 4.068 21 C -0.132 4.132 22 C -0.083 4.083 23 C -0.134 4.134 24 C -0.070 4.070 25 N -0.602 5.602 26 H 0.263 0.737 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.429 0.571 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.046 -28.751 0.005 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.021 3.979 12 N -0.295 5.295 13 C 0.243 3.757 14 N -0.350 5.350 15 C 0.137 3.863 16 Cl 0.083 6.917 17 N -0.318 5.318 18 C 0.179 3.821 19 C -0.086 4.086 20 C -0.088 4.088 21 C -0.150 4.150 22 C -0.101 4.101 23 C -0.151 4.151 24 C -0.090 4.090 25 N -0.333 5.333 26 H 0.072 0.928 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.269 0.731 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.171 0.829 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.603 -28.354 0.011 29.631 hybrid contribution -0.276 1.492 -0.004 1.517 sum 8.327 -26.863 0.007 28.124 Atomic orbital electron populations 1.70103 1.07795 1.27706 1.51684 1.25984 0.95757 1.03415 0.94865 0.85400 0.79172 0.78849 0.77627 1.18388 1.20584 1.20593 1.21691 0.93687 0.92057 1.50366 0.91746 1.18911 0.94303 0.92503 0.95424 1.21625 0.98649 0.91707 1.02196 1.21435 0.91018 0.83524 1.01924 1.44447 1.11113 0.99560 1.74399 1.19386 0.83817 0.87797 0.84687 1.68028 1.16287 1.23770 1.26945 1.23114 0.91080 0.84548 0.87560 1.98454 1.02943 1.94913 1.95425 1.68564 1.03114 1.35310 1.24858 1.21884 0.87448 0.89710 0.83077 1.18119 0.91416 0.89752 1.09344 1.21469 1.01511 0.90710 0.95134 1.21487 0.93234 0.99781 1.00473 1.21843 0.96116 0.97632 0.94528 1.21473 1.00875 0.92187 1.00599 1.21451 0.91174 1.01079 0.95314 1.68594 1.38510 0.99660 1.26486 0.92807 0.98562 0.98556 0.91426 0.91430 0.91923 0.91944 0.73108 0.84614 0.82619 0.82310 0.82874 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -29.74 9.11 25.60 0.23 -29.50 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 11 C 0.14 4.83 5.68 86.38 0.49 5.32 16 12 N -0.66 -19.15 5.69 -350.64 -1.99 -21.15 16 13 C 0.61 19.08 8.48 261.25 2.21 21.29 16 14 N -0.62 -20.29 9.70 -193.21 -1.87 -22.16 16 15 C 0.44 13.22 8.25 180.58 1.49 14.71 16 16 Cl 0.05 1.35 29.30 -2.72 -0.08 1.27 16 17 N -0.59 -16.77 9.59 -184.27 -1.77 -18.54 16 18 C 0.45 12.50 7.59 137.26 1.04 13.54 16 19 C -0.08 -1.83 5.88 -20.05 -0.12 -1.95 16 20 C -0.07 -1.19 9.58 22.49 0.22 -0.98 16 21 C -0.13 -1.51 10.03 22.24 0.22 -1.28 16 22 C -0.08 -0.78 10.04 22.32 0.22 -0.56 16 23 C -0.13 -1.61 10.03 22.24 0.22 -1.39 16 24 C -0.07 -1.27 9.58 22.50 0.22 -1.06 16 25 N -0.60 -17.56 9.64 -191.59 -1.85 -19.41 16 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.43 10.57 8.59 -92.71 -0.80 9.78 16 34 H 0.14 2.39 7.55 -2.91 -0.02 2.37 16 35 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.13 2.49 7.55 -2.91 -0.02 2.47 16 Total: -1.00 -67.00 350.79 2.27 -64.72 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.30 Total: 9.33 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 7.23 Total: 16.24 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -7.20 Total: -137.18 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: 1.35 SS G_CDS: -0.08 Total: 1.27 kcal Total: -67.00 2.27 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.083 kcal (2) G-P(sol) polarization free energy of solvation -66.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds