Wall clock time and date at job start Tue Mar 31 2020 12:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34192 * 119.45580 * 2 1 4 4 O 1.21807 * 118.56927 * 359.97438 * 3 2 1 5 5 N 1.33351 * 122.86800 * 179.97438 * 3 2 1 6 6 C 1.32025 * 121.50146 * 0.02562 * 5 3 2 7 7 O 1.34908 * 120.65452 * 180.02562 * 6 5 3 8 8 C 1.47428 * 118.69105 * 0.02562 * 6 5 3 9 9 N 1.32269 * 121.23651 * 180.02562 * 8 6 5 10 10 O 1.21794 * 119.99670 * 185.12511 * 9 8 6 11 11 C 1.35912 * 119.45718 * 179.72865 * 2 1 3 12 12 N 1.35927 * 120.83322 * 359.97438 * 11 2 1 13 13 C 1.38326 * 120.00127 * 265.65512 * 12 11 2 14 14 N 1.32577 * 120.22735 * 354.62338 * 13 12 11 15 15 C 1.32190 * 120.09835 * 179.76481 * 14 13 12 16 16 C 1.39041 * 120.55684 * 0.51504 * 15 14 13 17 17 N 1.31666 * 120.45384 * 359.74066 * 16 15 14 18 18 C 1.33943 * 119.88766 * 0.02562 * 17 16 15 19 19 C 1.40850 * 120.27619 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00150 * 179.97438 * 19 18 17 21 21 C 1.40159 * 119.99679 * 359.97438 * 19 18 17 22 22 N 1.30703 * 120.00309 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00018 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46896 * 90.00343 * 23 21 19 25 25 H 1.48495 * 109.47160 * 210.00019 * 23 21 19 26 26 H 1.48501 * 109.47142 * 330.00645 * 23 21 19 27 27 H 1.09005 * 109.47068 * 354.98777 * 1 2 3 28 28 H 1.09001 * 109.47061 * 234.98644 * 1 2 3 29 29 H 1.08998 * 109.47239 * 114.98464 * 1 2 3 30 30 H 0.96705 * 114.00023 * 0.02562 * 7 6 5 31 31 H 0.96994 * 119.99963 * 85.66359 * 12 11 2 32 32 H 1.07995 * 119.71978 * 180.25937 * 15 14 13 33 33 H 1.07996 * 119.77141 * 179.72419 * 16 15 14 34 34 H 0.96998 * 120.00037 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1249 1.1685 0.0000 4 8 1.4799 2.2017 -0.0005 5 7 3.4561 1.2478 0.0005 6 6 4.2117 0.1652 0.0005 7 8 5.5570 0.2654 0.0016 8 6 3.5563 -1.1554 -0.0006 9 7 4.2644 -2.2726 -0.0001 10 8 3.7031 -3.3493 -0.0953 11 6 2.1334 -1.1834 0.0056 12 7 1.4597 -2.3640 0.0117 13 6 1.1962 -3.0038 1.2095 14 7 1.6893 -2.5263 2.3438 15 6 1.4320 -3.1371 3.4875 16 6 0.6535 -4.2889 3.5143 17 7 0.1570 -4.7848 2.4003 18 6 0.4025 -4.1778 1.2318 19 6 -0.1250 -4.7010 0.0352 20 1 0.0754 -4.2077 -0.9044 21 6 -0.9100 -5.8617 0.0639 22 7 -1.1530 -6.4584 1.2012 23 14 -1.6103 -6.5553 -1.5229 24 1 -0.6461 -7.5207 -2.1091 25 1 -2.8924 -7.2478 -1.2372 26 1 -1.8488 -5.4486 -2.4840 27 1 -0.3633 1.0238 0.0898 28 1 -0.3633 -0.5897 0.8417 29 1 -0.3633 -0.4340 -0.9315 30 1 5.8837 1.1756 0.0026 31 1 1.1639 -2.7579 -0.8238 32 1 1.8333 -2.7405 4.4084 33 1 0.4550 -4.7801 4.4554 34 1 -1.6966 -7.2615 1.2211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165660590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:03 Heat of formation + Delta-G solvation = 34.048649 kcal Electronic energy + Delta-G solvation = -26932.141742 eV Core-core repulsion = 22868.358790 eV Total energy + Delta-G solvation = -4063.782952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38391 -41.22800 -40.70023 -40.04885 -38.80259 -36.57348 -35.89243 -35.78508 -33.58962 -32.98509 -31.12952 -29.12415 -27.93791 -27.10387 -25.70344 -23.92167 -23.72146 -23.48018 -21.38126 -20.18305 -19.56716 -19.23419 -19.08730 -18.04447 -17.77471 -17.52457 -16.99296 -16.99215 -16.37968 -16.19506 -15.83482 -15.47553 -15.35719 -15.13637 -14.80729 -14.69541 -14.57628 -13.92111 -13.71467 -13.20659 -12.92784 -12.62046 -12.57343 -12.31481 -12.12713 -11.91734 -11.65975 -11.59184 -11.51111 -11.43474 -10.71970 -10.25363 -10.03380 -9.36283 -9.08613 -8.30436 -6.44108 -1.38262 -0.60863 0.60432 0.78439 1.11040 1.13009 1.54637 1.55543 1.64760 1.67645 1.95774 2.22343 2.28614 2.56152 2.88905 3.05377 3.41177 3.75389 3.87346 3.92562 4.13197 4.20944 4.27070 4.34639 4.50465 4.52713 4.76843 4.89387 5.03645 5.19881 5.67911 5.81508 5.90568 5.99136 6.13998 6.30066 6.51243 6.62966 6.81148 7.08991 7.34068 7.99603 8.40609 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.004788 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.286301 B = 5846.332372 C = 6047.858032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.514 5.514 3 C 0.667 3.333 4 O -0.538 6.538 5 N -0.622 5.622 6 C 0.526 3.474 7 O -0.415 6.415 8 C -0.249 4.249 9 N -0.297 5.297 10 O 0.074 5.926 11 C 0.598 3.402 12 N -0.653 5.653 13 C 0.239 3.761 14 N -0.497 5.497 15 C -0.099 4.099 16 C 0.055 3.945 17 N -0.477 5.477 18 C 0.193 3.807 19 C -0.418 4.418 20 H 0.112 0.888 21 C 0.029 3.971 22 N -0.740 5.740 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.244 1.244 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.442 0.558 31 H 0.446 0.554 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 5.082 -5.612 7.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.229 5.229 3 C 0.369 3.631 4 O -0.413 6.413 5 N -0.383 5.383 6 C 0.320 3.680 7 O -0.210 6.210 8 C -0.374 4.374 9 N 0.189 4.811 10 O -0.290 6.290 11 C 0.372 3.628 12 N -0.302 5.302 13 C -0.003 4.003 14 N -0.216 5.216 15 C -0.255 4.255 16 C -0.110 4.110 17 N -0.195 5.195 18 C 0.063 3.937 19 C -0.450 4.450 20 H 0.129 0.871 21 C -0.196 4.196 22 N -0.361 5.361 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.167 1.167 27 H 0.131 0.869 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.304 0.696 31 H 0.296 0.704 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.338 7.218 -5.142 9.470 hybrid contribution -1.194 -0.614 -0.296 1.375 sum 2.144 6.605 -5.438 8.820 Atomic orbital electron populations 1.22505 0.73978 1.06788 1.05896 1.47792 1.12981 1.06573 1.55591 1.17348 0.85124 0.82682 0.77974 1.90924 1.65567 1.31955 1.52825 1.69506 1.04260 1.27931 1.36588 1.21388 0.85078 0.86437 0.75065 1.85003 1.13092 1.38980 1.83958 1.22413 0.88511 0.95935 1.30551 1.73263 1.29231 0.94997 0.83654 1.93820 1.80020 1.19387 1.35806 1.19543 0.88499 0.82195 0.72574 1.40421 1.63386 1.17845 1.08552 1.18696 1.01873 0.95322 0.84381 1.67123 1.21734 1.33889 0.98840 1.22539 1.08937 0.99454 0.94555 1.23666 0.94858 0.94091 0.98398 1.69589 1.23043 1.29762 0.97114 1.19223 0.91895 0.88561 0.94004 1.19826 1.24414 1.07624 0.93162 0.87056 1.26935 0.95411 0.96471 1.00737 1.70144 1.23753 1.13636 1.28589 0.85160 0.77684 0.79402 0.77403 1.19015 1.20351 1.16726 0.86940 0.90015 0.86442 0.69595 0.70424 0.83585 0.83038 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.25 9.95 127.77 1.27 2.52 16 2 N -0.51 -15.80 2.98 -676.55 -2.01 -17.81 16 3 C 0.67 22.85 8.29 179.68 1.49 24.34 16 4 O -0.54 -20.48 16.31 -4.69 -0.08 -20.55 16 5 N -0.62 -19.81 10.34 -434.00 -4.49 -24.29 16 6 C 0.53 15.71 8.17 87.09 0.71 16.42 16 7 O -0.41 -9.49 13.45 -81.76 -1.10 -10.59 16 8 C -0.25 -8.52 6.92 42.51 0.29 -8.23 16 9 N -0.30 -10.97 11.51 -47.63 -0.55 -11.52 16 10 O 0.07 2.83 16.38 -5.23 -0.09 2.75 16 11 C 0.60 19.54 6.03 133.80 0.81 20.34 16 12 N -0.65 -21.73 2.78 -186.24 -0.52 -22.25 16 13 C 0.24 9.79 6.45 133.89 0.86 10.66 16 14 N -0.50 -21.40 9.68 -190.62 -1.84 -23.25 16 15 C -0.10 -4.14 11.22 84.83 0.95 -3.19 16 16 C 0.06 2.37 11.21 84.91 0.95 3.33 16 17 N -0.48 -23.05 8.04 -188.07 -1.51 -24.56 16 18 C 0.19 8.76 6.56 40.32 0.26 9.02 16 19 C -0.42 -17.42 8.89 23.38 0.21 -17.21 16 20 H 0.11 3.86 6.13 -2.91 -0.02 3.84 16 21 C 0.03 1.20 5.50 85.33 0.47 1.67 16 22 N -0.74 -33.97 11.48 21.86 0.25 -33.72 16 23 Si 0.98 30.73 29.56 68.60 2.03 32.76 16 24 H -0.27 -8.31 7.11 99.48 0.71 -7.61 16 25 H -0.28 -8.79 7.11 99.48 0.71 -8.08 16 26 H -0.24 -6.95 7.11 99.48 0.71 -6.24 16 27 H 0.11 2.78 6.78 -2.38 -0.02 2.77 16 28 H 0.08 2.29 8.11 -2.39 -0.02 2.27 16 29 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.44 5.12 8.99 -74.05 -0.67 4.45 16 31 H 0.45 12.86 6.82 -92.71 -0.63 12.23 16 32 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 33 H 0.15 5.63 8.06 -2.91 -0.02 5.60 16 34 H 0.28 11.86 8.29 -92.71 -0.77 11.09 16 Total: -1.00 -63.79 312.40 -1.69 -65.48 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.07 Total: 27.88 kcal Atomic # 6 Polarization: 51.39 SS G_CDS: 8.28 Total: 59.67 kcal Atomic # 7 Polarization: -146.73 SS G_CDS: -10.67 Total: -157.40 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.26 Total: -28.39 kcal Atomic # 14 Polarization: 30.73 SS G_CDS: 2.03 Total: 32.76 kcal Total: -63.79 -1.69 -65.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165660590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.527 kcal (2) G-P(sol) polarization free energy of solvation -63.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds