Wall clock time and date at job start Tue Mar 31 2020 12:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 109.50839 * 300.28341 * 9 7 2 11 11 C 1.53124 * 109.50158 * 60.36214 * 9 7 2 12 12 C 1.53121 * 109.16108 * 177.59378 * 11 9 7 13 13 C 1.53034 * 109.27653 * 302.34293 * 12 11 9 14 14 N 1.46845 * 109.52662 * 59.18031 * 13 12 11 15 15 C 1.37880 * 111.00385 * 174.16056 * 14 13 12 16 16 N 1.32487 * 120.86376 * 123.67664 * 15 14 13 17 17 C 1.32460 * 121.55498 * 179.66923 * 16 15 14 18 18 Cl 1.73601 * 118.59681 * 180.29749 * 17 16 15 19 19 N 1.31354 * 122.80762 * 0.65029 * 17 16 15 20 20 C 1.33951 * 120.44845 * 359.67307 * 19 17 16 21 21 C 1.40553 * 122.06696 * 180.02562 * 20 19 17 22 22 C 1.36679 * 118.06474 * 179.97438 * 21 20 19 23 23 C 1.39340 * 119.95524 * 359.97438 * 22 21 20 24 24 N 1.31198 * 121.65880 * 359.97438 * 23 22 21 25 25 C 1.33092 * 121.18957 * 0.03512 * 24 23 22 26 26 C 1.46852 * 111.23290 * 298.27981 * 14 13 12 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.51694 * 297.49548 * 11 9 7 29 29 H 1.08997 * 109.52437 * 57.62357 * 11 9 7 30 30 H 1.09000 * 109.50221 * 62.28486 * 12 11 9 31 31 H 1.09001 * 109.50111 * 182.39859 * 12 11 9 32 32 H 1.09003 * 109.46303 * 179.19730 * 13 12 11 33 33 H 1.09004 * 109.46614 * 299.16171 * 13 12 11 34 34 H 1.07998 * 120.97245 * 359.95721 * 21 20 19 35 35 H 1.07997 * 120.01837 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.16745 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.42321 * 301.68140 * 26 14 13 38 38 H 1.08995 * 109.49687 * 181.71855 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6243 -2.5534 0.8954 11 6 0.3720 -2.5875 -1.2452 12 6 -0.3436 -3.9411 -1.2619 13 6 0.6965 -5.0629 -1.2230 14 7 1.5114 -4.9348 -0.0081 15 6 2.3725 -6.0035 0.1243 16 7 3.6792 -5.8139 0.2339 17 6 4.5182 -6.8301 0.3683 18 17 6.2149 -6.4931 0.5134 19 7 4.1218 -8.0822 0.3896 20 6 2.8215 -8.3846 0.2799 21 6 2.3598 -9.7120 0.2990 22 6 1.0152 -9.9270 0.1815 23 6 0.1468 -8.8455 0.0481 24 7 0.5845 -7.6088 0.0320 25 6 1.8824 -7.3355 0.1422 26 6 2.2450 -3.6628 0.0085 27 1 -0.4850 0.8400 0.0004 28 1 -0.3660 -1.7854 -1.2290 29 1 0.9940 -2.4922 -2.1352 30 1 -0.9954 -4.0188 -0.3917 31 1 -0.9381 -4.0272 -2.1714 32 1 0.1898 -6.0280 -1.2203 33 1 1.3393 -4.9929 -2.1005 34 1 3.0476 -10.5382 0.4033 35 1 0.6260 -10.9343 0.1927 36 1 -0.9133 -9.0299 -0.0443 37 1 2.8811 -3.5996 -0.8744 38 1 2.8625 -3.6106 0.9052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:56 Heat of formation + Delta-G solvation = 85.659214 kcal Electronic energy + Delta-G solvation = -24163.467435 eV Core-core repulsion = 20646.171992 eV Total energy + Delta-G solvation = -3517.295442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83319 -39.07038 -38.35391 -36.73258 -34.95794 -33.16513 -32.39421 -31.71946 -30.26199 -29.89991 -25.70068 -25.35284 -24.54605 -23.57981 -22.05792 -21.48805 -19.47819 -18.97173 -18.21260 -17.67868 -16.48862 -15.83230 -15.73840 -15.50154 -15.07515 -14.48396 -14.16272 -13.96878 -13.57139 -13.45727 -13.14699 -13.04292 -12.62293 -12.56136 -12.02808 -11.67339 -11.52997 -11.49178 -11.40540 -10.98713 -10.84217 -10.70801 -10.37309 -10.08732 -9.94917 -9.74787 -9.64490 -9.35612 -9.27885 -9.00607 -8.74456 -8.35670 -8.05245 -6.02201 -4.08161 -0.01804 0.34873 1.37886 1.64320 2.68368 3.29421 3.37175 3.39514 3.44700 3.78780 3.90028 4.02381 4.24781 4.42877 4.56064 4.65039 4.83058 5.07361 5.28568 5.33293 5.48601 5.51189 5.65853 5.70513 5.84295 5.96531 6.23855 6.29447 6.34030 6.53086 6.57123 6.62109 6.80087 6.98710 7.15127 7.23699 7.43758 7.58292 7.70972 7.87928 7.94939 8.08162 8.38855 8.95273 9.56748 11.04227 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.004230 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.273232 B = 6617.222301 C = 8290.419281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.052 3.948 10 H 0.036 0.964 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.442 5.442 15 C 0.446 3.554 16 N -0.556 5.556 17 C 0.410 3.590 18 Cl 0.022 6.978 19 N -0.530 5.530 20 C 0.142 3.858 21 C -0.063 4.063 22 C -0.130 4.130 23 C 0.106 3.894 24 N -0.419 5.419 25 C 0.008 3.992 26 C 0.068 3.932 27 H 0.260 0.740 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.041 0.959 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.049 0.951 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -19.668 -1.660 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.033 3.967 10 H 0.054 0.946 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.061 4.061 14 N -0.154 5.154 15 C 0.191 3.809 16 N -0.283 5.283 17 C 0.113 3.887 18 Cl 0.050 6.950 19 N -0.253 5.253 20 C 0.014 3.986 21 C -0.090 4.090 22 C -0.153 4.153 23 C -0.067 4.067 24 N -0.128 5.128 25 C -0.122 4.122 26 C -0.056 4.056 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.059 0.941 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.068 0.932 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.593 -18.541 -1.280 18.653 hybrid contribution 0.887 0.114 -0.263 0.932 sum 2.479 -18.427 -1.542 18.657 Atomic orbital electron populations 1.69886 1.05860 1.26375 1.50592 1.24914 0.94840 0.99028 0.94949 0.86536 0.80240 0.83707 0.77541 1.19709 1.21062 1.21028 1.21104 0.93059 0.90157 1.50851 0.92388 1.18781 0.92498 0.90340 0.95108 0.94604 1.21754 1.00273 0.94761 0.98618 1.21735 0.96841 0.95634 1.01285 1.22534 0.95240 1.02487 0.85866 1.58288 1.19696 1.02548 1.34902 1.20357 0.86470 0.89296 0.84742 1.67924 1.01932 1.35330 1.23163 1.22699 0.89389 0.84999 0.91586 1.98427 1.06529 1.94853 1.95180 1.68139 1.15929 1.19946 1.21271 1.19389 0.88453 0.94755 0.95992 1.21135 0.96056 0.94498 0.97295 1.22099 0.93548 1.01440 0.98207 1.23153 1.01019 0.87125 0.95392 1.67815 1.13476 1.22492 1.09051 1.19853 0.91387 0.94137 1.06868 1.22588 0.96344 0.84754 1.01913 0.93029 0.88528 0.94629 0.91421 0.92269 0.88353 0.94055 0.83129 0.83483 0.81474 0.93244 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 11.36 55.43 0.63 -24.11 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.26 2.26 -91.69 -0.21 1.05 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.12 -2.62 5.03 -26.60 -0.13 -2.75 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C 0.06 1.09 5.17 -3.84 -0.02 1.07 16 14 N -0.44 -8.52 4.61 -172.63 -0.79 -9.31 16 15 C 0.45 8.13 6.44 -154.95 -1.00 7.13 16 16 N -0.56 -10.27 8.77 -10.54 -0.09 -10.36 16 17 C 0.41 6.83 8.15 -91.96 -0.75 6.08 16 18 Cl 0.02 0.32 29.24 -51.86 -1.52 -1.20 16 19 N -0.53 -8.32 10.40 -9.69 -0.10 -8.42 16 20 C 0.14 2.05 6.62 -84.84 -0.56 1.49 16 21 C -0.06 -0.63 10.14 -39.27 -0.40 -1.03 16 22 C -0.13 -1.00 10.03 -39.74 -0.40 -1.40 16 23 C 0.11 1.00 11.15 -17.41 -0.19 0.81 16 24 N -0.42 -5.85 7.77 -10.78 -0.08 -5.93 16 25 C 0.01 0.13 6.36 -84.67 -0.54 -0.41 16 26 C 0.07 1.48 3.89 -3.83 -0.01 1.47 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.10 2.44 6.17 -51.93 -0.32 2.12 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.55 5.49 -51.93 -0.29 1.27 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.08 1.76 7.74 -51.93 -0.40 1.36 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -29.85 326.67 -11.18 -41.02 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.35 Total: -1.38 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -4.77 Total: -1.27 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.44 Total: -58.14 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.52 Total: -1.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.85 -11.18 -41.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.681 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds