Wall clock time and date at job start Tue Mar 31 2020 12:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 109.50839 * 300.28341 * 9 7 2 11 11 C 1.53124 * 109.50158 * 60.36214 * 9 7 2 12 12 C 1.53121 * 109.16108 * 177.59378 * 11 9 7 13 13 C 1.53034 * 109.27653 * 302.34293 * 12 11 9 14 14 N 1.46845 * 109.52662 * 59.18031 * 13 12 11 15 15 C 1.37880 * 111.00385 * 174.16056 * 14 13 12 16 16 N 1.32487 * 120.86376 * 123.67664 * 15 14 13 17 17 C 1.32460 * 121.55498 * 179.66923 * 16 15 14 18 18 Cl 1.73601 * 118.59681 * 180.29749 * 17 16 15 19 19 N 1.31354 * 122.80762 * 0.65029 * 17 16 15 20 20 C 1.33951 * 120.44845 * 359.67307 * 19 17 16 21 21 C 1.40553 * 122.06696 * 180.02562 * 20 19 17 22 22 C 1.36679 * 118.06474 * 179.97438 * 21 20 19 23 23 C 1.39340 * 119.95524 * 359.97438 * 22 21 20 24 24 N 1.31198 * 121.65880 * 359.97438 * 23 22 21 25 25 C 1.33092 * 121.18957 * 0.03512 * 24 23 22 26 26 C 1.46852 * 111.23290 * 298.27981 * 14 13 12 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.51694 * 297.49548 * 11 9 7 29 29 H 1.08997 * 109.52437 * 57.62357 * 11 9 7 30 30 H 1.09000 * 109.50221 * 62.28486 * 12 11 9 31 31 H 1.09001 * 109.50111 * 182.39859 * 12 11 9 32 32 H 1.09003 * 109.46303 * 179.19730 * 13 12 11 33 33 H 1.09004 * 109.46614 * 299.16171 * 13 12 11 34 34 H 1.07998 * 120.97245 * 359.95721 * 21 20 19 35 35 H 1.07997 * 120.01837 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.16745 * 179.97438 * 23 22 21 37 37 H 1.09002 * 109.42321 * 301.68140 * 26 14 13 38 38 H 1.08995 * 109.49687 * 181.71855 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6243 -2.5534 0.8954 11 6 0.3720 -2.5875 -1.2452 12 6 -0.3436 -3.9411 -1.2619 13 6 0.6965 -5.0629 -1.2230 14 7 1.5114 -4.9348 -0.0081 15 6 2.3725 -6.0035 0.1243 16 7 3.6792 -5.8139 0.2339 17 6 4.5182 -6.8301 0.3683 18 17 6.2149 -6.4931 0.5134 19 7 4.1218 -8.0822 0.3896 20 6 2.8215 -8.3846 0.2799 21 6 2.3598 -9.7120 0.2990 22 6 1.0152 -9.9270 0.1815 23 6 0.1468 -8.8455 0.0481 24 7 0.5845 -7.6088 0.0320 25 6 1.8824 -7.3355 0.1422 26 6 2.2450 -3.6628 0.0085 27 1 -0.4850 0.8400 0.0004 28 1 -0.3660 -1.7854 -1.2290 29 1 0.9940 -2.4922 -2.1352 30 1 -0.9954 -4.0188 -0.3917 31 1 -0.9381 -4.0272 -2.1714 32 1 0.1898 -6.0280 -1.2203 33 1 1.3393 -4.9929 -2.1005 34 1 3.0476 -10.5382 0.4033 35 1 0.6260 -10.9343 0.1927 36 1 -0.9133 -9.0299 -0.0443 37 1 2.8811 -3.5996 -0.8744 38 1 2.8625 -3.6106 0.9052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:55 Heat of formation + Delta-G solvation = 67.743822 kcal Electronic energy + Delta-G solvation = -24164.244304 eV Core-core repulsion = 20646.171992 eV Total energy + Delta-G solvation = -3518.072312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.94744 -40.36316 -39.53871 -37.89252 -36.46303 -34.77793 -33.41148 -33.16861 -31.80416 -31.29888 -27.17272 -26.86633 -25.79112 -24.86951 -23.44470 -22.98314 -20.82930 -20.27455 -19.49954 -18.95366 -18.18052 -17.14097 -16.94938 -16.57076 -16.52474 -16.01540 -15.60724 -15.35781 -14.84894 -14.63187 -14.50258 -14.35009 -14.21643 -13.83602 -13.57104 -12.92554 -12.89394 -12.76411 -12.64508 -12.63761 -12.55973 -12.52067 -11.94274 -11.84701 -11.48335 -11.31588 -11.05222 -10.83453 -10.60341 -10.53208 -10.40483 -10.08599 -9.34870 -8.10737 -6.24190 -1.06741 -0.65015 0.21600 0.63989 1.40077 1.42318 1.53791 1.67545 2.13538 2.44400 2.76966 2.83056 2.98677 3.17008 3.25429 3.62016 3.68147 3.89817 4.04876 4.08961 4.23590 4.36091 4.48621 4.54941 4.57727 4.74822 4.77380 4.89448 4.96417 4.98554 5.06017 5.11458 5.35122 5.46000 5.54472 5.61730 5.74324 5.89434 5.96326 6.10955 6.34888 6.62602 6.72039 6.84929 7.43557 8.94547 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.004230 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.273232 B = 6617.222301 C = 8290.419281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.053 3.947 10 H 0.001 0.999 11 C -0.107 4.107 12 C -0.106 4.106 13 C 0.070 3.930 14 N -0.455 5.455 15 C 0.421 3.579 16 N -0.581 5.581 17 C 0.385 3.615 18 Cl 0.032 6.968 19 N -0.522 5.522 20 C 0.119 3.881 21 C -0.065 4.065 22 C -0.100 4.100 23 C 0.124 3.876 24 N -0.459 5.459 25 C -0.002 4.002 26 C 0.092 3.908 27 H 0.262 0.738 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.037 0.963 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.210 0.790 37 H 0.037 0.963 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -23.091 -2.158 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.034 3.966 10 H 0.019 0.981 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.054 4.054 14 N -0.168 5.168 15 C 0.168 3.832 16 N -0.309 5.309 17 C 0.089 3.911 18 Cl 0.060 6.940 19 N -0.244 5.244 20 C -0.010 4.010 21 C -0.091 4.091 22 C -0.122 4.122 23 C -0.049 4.049 24 N -0.169 5.169 25 C -0.131 4.131 26 C -0.034 4.034 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.195 0.805 35 H 0.220 0.780 36 H 0.227 0.773 37 H 0.055 0.945 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.516 -21.992 -1.776 22.070 hybrid contribution 1.136 0.897 -0.085 1.449 sum 1.652 -21.096 -1.861 21.242 Atomic orbital electron populations 1.70007 1.06964 1.27175 1.50889 1.25633 0.95679 1.02062 0.94545 0.85578 0.78978 0.79792 0.77747 1.19556 1.20253 1.20564 1.21415 0.92924 0.91838 1.51297 0.93278 1.18661 0.92699 0.90775 0.94481 0.98112 1.21538 0.99299 0.96584 0.97150 1.21613 0.96878 0.93412 1.02447 1.22522 0.94665 1.02883 0.85334 1.58339 1.20232 1.01642 1.36566 1.20465 0.86444 0.90177 0.86128 1.67781 1.02756 1.36740 1.23612 1.22821 0.89779 0.85175 0.93353 1.98413 1.05472 1.94908 1.95251 1.68185 1.16976 1.19183 1.20037 1.19962 0.87703 0.96489 0.96807 1.21580 0.97861 0.92970 0.96713 1.22692 0.91966 1.03441 0.94120 1.24083 1.03354 0.86102 0.91323 1.67807 1.12337 1.25111 1.11614 1.19728 0.92729 0.93039 1.07575 1.22044 0.95228 0.85755 1.00326 0.92862 0.91341 0.95278 0.92113 0.89243 0.86086 0.94429 0.80508 0.77952 0.77311 0.94460 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.39 11.36 21.45 0.24 -52.14 16 2 C 0.02 1.12 5.31 84.65 0.45 1.57 16 3 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.54 -30.35 8.56 25.60 0.22 -30.13 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 10 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 11 C -0.11 -5.06 5.03 30.68 0.15 -4.90 16 12 C -0.11 -3.90 6.09 30.65 0.19 -3.72 16 13 C 0.07 2.43 5.17 86.33 0.45 2.88 16 14 N -0.45 -18.19 4.61 -700.08 -3.22 -21.41 16 15 C 0.42 15.80 6.44 134.12 0.86 16.66 16 16 N -0.58 -22.48 8.77 -187.26 -1.64 -24.12 16 17 C 0.39 13.15 8.15 180.81 1.47 14.63 16 18 Cl 0.03 0.93 29.24 -2.72 -0.08 0.85 16 19 N -0.52 -16.07 10.40 -184.56 -1.92 -17.99 16 20 C 0.12 3.22 6.62 40.18 0.27 3.49 16 21 C -0.06 -1.03 10.14 22.47 0.23 -0.80 16 22 C -0.10 -0.91 10.03 22.17 0.22 -0.69 16 23 C 0.12 1.71 11.15 85.05 0.95 2.66 16 24 N -0.46 -11.63 7.77 -188.02 -1.46 -13.09 16 25 C 0.00 -0.07 6.36 40.67 0.26 0.19 16 26 C 0.09 4.26 3.89 86.33 0.34 4.59 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.07 3.61 6.17 -2.38 -0.01 3.59 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.12 3.67 5.49 -2.39 -0.01 3.66 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 36 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 38 H 0.06 2.87 7.74 -2.39 -0.02 2.85 16 Total: -1.00 -70.65 326.67 1.07 -69.58 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 1.09 Total: 2.91 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.03 Total: 9.14 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -8.00 Total: -128.76 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -70.65 1.07 -69.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.328 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds