Wall clock time and date at job start Tue Mar 31 2020 12:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00296 * 2 1 4 4 H 1.48498 * 109.47155 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47189 * 119.99953 * 3 2 1 7 7 C 1.37879 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99764 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50915 * 60.07781 * 9 7 2 11 11 C 1.53117 * 109.50285 * 299.99456 * 9 7 2 12 12 C 1.53123 * 109.15910 * 182.40514 * 11 9 7 13 13 C 1.53044 * 109.27652 * 57.65862 * 12 11 9 14 14 N 1.46842 * 109.52169 * 300.82023 * 13 12 11 15 15 C 1.38688 * 111.00103 * 185.84114 * 14 13 12 16 16 N 1.31984 * 120.55802 * 236.04809 * 15 14 13 17 17 N 1.28087 * 123.35425 * 179.72272 * 16 15 14 18 18 C 1.31464 * 123.34488 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 120.47566 * 179.97438 * 18 17 16 20 20 C 1.40691 * 119.05288 * 359.97438 * 18 17 16 21 21 C 1.40373 * 122.82411 * 179.97438 * 20 18 17 22 22 C 1.36752 * 117.87842 * 180.02562 * 21 20 18 23 23 C 1.39339 * 119.98388 * 0.02562 * 22 21 20 24 24 N 1.31275 * 121.82589 * 359.97438 * 23 22 21 25 25 C 1.33033 * 121.06509 * 359.97438 * 24 23 22 26 26 C 1.46843 * 111.19988 * 61.74138 * 14 13 12 27 27 H 0.96995 * 119.99261 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52277 * 62.50689 * 11 9 7 29 29 H 1.09000 * 109.57918 * 302.34186 * 11 9 7 30 30 H 1.08993 * 109.50478 * 297.71341 * 12 11 9 31 31 H 1.08999 * 109.50374 * 177.59725 * 12 11 9 32 32 H 1.08997 * 109.45621 * 180.79955 * 13 12 11 33 33 H 1.09004 * 109.45407 * 60.82952 * 13 12 11 34 34 H 1.07995 * 121.06189 * 0.02562 * 21 20 18 35 35 H 1.07994 * 120.01034 * 179.97438 * 22 21 20 36 36 H 1.07996 * 119.08453 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.46055 * 58.27738 * 26 14 13 38 38 H 1.09003 * 109.46132 * 178.24183 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6254 -2.5583 -0.8901 11 6 0.3699 -2.5807 1.2502 12 6 -0.3459 -3.9342 1.2730 13 6 0.6942 -5.0564 1.2417 14 7 1.5109 -4.9348 0.0274 15 6 2.3771 -6.0105 -0.0988 16 7 3.6775 -5.8153 -0.2121 17 7 4.5254 -6.7684 -0.3263 18 6 4.1869 -8.0387 -0.3428 19 17 5.3994 -9.2709 -0.5018 20 6 2.8281 -8.3851 -0.2297 21 6 2.3785 -9.7149 -0.2387 22 6 1.0340 -9.9362 -0.1228 23 6 0.1589 -8.8588 -0.0014 24 7 0.5860 -7.6175 0.0063 25 6 1.8818 -7.3367 -0.1019 26 6 2.2446 -3.6630 0.0061 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3680 -1.7788 1.2287 29 1 0.9899 -2.4815 2.1413 30 1 -0.9964 -4.0165 0.4024 31 1 -0.9417 -4.0155 2.1821 32 1 0.1873 -6.0214 1.2435 33 1 1.3357 -4.9815 2.1198 34 1 3.0724 -10.5370 -0.3341 35 1 0.6505 -10.9458 -0.1261 36 1 -0.9001 -9.0502 0.0897 37 1 2.8789 -3.5949 0.8900 38 1 2.8640 -3.6160 -0.8896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:02 Heat of formation + Delta-G solvation = 92.904605 kcal Electronic energy + Delta-G solvation = -24120.238830 eV Core-core repulsion = 20603.257572 eV Total energy + Delta-G solvation = -3516.981258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89898 -39.17608 -38.45629 -36.98011 -34.58667 -33.21886 -32.21750 -32.07429 -29.98597 -29.85263 -25.73082 -25.53869 -24.69176 -23.64552 -22.18560 -21.47765 -19.35070 -18.93351 -18.31047 -17.61774 -16.66152 -15.86823 -15.75185 -15.63206 -15.04445 -14.50247 -14.18555 -14.04528 -13.72166 -13.57307 -13.19848 -13.04802 -12.63412 -12.51032 -12.23877 -11.90905 -11.65784 -11.44667 -10.96033 -10.89307 -10.82844 -10.71700 -10.31141 -10.02823 -9.96111 -9.85578 -9.78714 -9.53558 -9.38864 -9.16115 -8.75147 -8.31896 -7.91661 -5.99290 -4.05208 -0.08426 0.17883 1.40471 1.47895 2.62919 3.34685 3.38522 3.39815 3.45488 3.58538 3.77587 3.98225 4.16015 4.38402 4.43794 4.47499 4.72608 4.97804 5.09679 5.17162 5.31094 5.43428 5.54781 5.58438 5.64754 5.90953 5.99759 6.17520 6.31308 6.38276 6.55875 6.64081 6.83122 6.96895 7.13696 7.26495 7.39471 7.52673 7.73760 7.98348 8.10351 8.41585 8.73891 8.97822 9.59370 11.07025 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.003653 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.007127 B = 7663.109842 C = 8886.619179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.053 3.947 10 H 0.036 0.964 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.442 5.442 15 C 0.329 3.671 16 N -0.286 5.286 17 N -0.207 5.207 18 C 0.105 3.895 19 Cl -0.013 7.013 20 C -0.098 4.098 21 C -0.049 4.049 22 C -0.148 4.148 23 C 0.130 3.870 24 N -0.429 5.429 25 C 0.109 3.891 26 C 0.067 3.933 27 H 0.261 0.739 28 H 0.096 0.904 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.047 0.953 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 -22.728 1.695 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.034 3.966 10 H 0.054 0.946 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.063 4.063 14 N -0.156 5.156 15 C 0.079 3.921 16 N -0.129 5.129 17 N -0.041 5.041 18 C -0.082 4.082 19 Cl 0.014 6.986 20 C -0.108 4.108 21 C -0.077 4.077 22 C -0.169 4.169 23 C -0.042 4.042 24 N -0.137 5.137 25 C -0.026 4.026 26 C -0.058 4.058 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.188 0.812 37 H 0.066 0.934 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.724 -20.627 1.315 20.681 hybrid contribution 0.512 -1.007 0.321 1.174 sum 1.236 -21.634 1.636 21.730 Atomic orbital electron populations 1.69872 1.05857 1.26553 1.50511 1.24914 0.94846 0.99003 0.94950 0.86641 0.79578 0.82995 0.78705 1.20211 1.21341 1.20278 1.21049 0.93021 0.90215 1.51008 0.92472 1.18752 0.92464 0.90273 0.95076 0.94589 1.21751 1.00280 0.94751 0.98615 1.21724 0.96843 0.95721 1.01150 1.22504 0.95281 1.02187 0.86371 1.58548 1.19668 1.02056 1.35295 1.22005 0.90288 0.89880 0.89947 1.73142 0.98833 1.22098 1.18868 1.72171 1.28911 0.96347 1.06689 1.23311 0.87731 0.91680 1.05435 1.98379 1.54951 1.49375 1.95862 1.19221 0.93017 0.96010 1.02558 1.21429 0.96731 0.94935 0.94633 1.22124 0.93737 1.01562 0.99459 1.23328 1.01236 0.87126 0.92481 1.68043 1.13440 1.21992 1.10272 1.19274 0.90069 0.92569 1.00651 1.22590 0.96413 0.85035 1.01767 0.92946 0.88529 0.94674 0.91488 0.92420 0.88702 0.94300 0.83090 0.83351 0.81164 0.93426 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.35 55.43 0.63 -24.37 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.06 8.56 -34.44 -0.29 -14.36 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.05 1.32 2.27 -91.69 -0.21 1.11 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.12 -2.66 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.17 6.09 -26.64 -0.16 -2.33 16 13 C 0.06 1.08 5.17 -3.83 -0.02 1.06 16 14 N -0.44 -8.65 4.63 -172.65 -0.80 -9.45 16 15 C 0.33 6.06 6.52 -154.75 -1.01 5.05 16 16 N -0.29 -5.55 9.81 31.51 0.31 -5.24 16 17 N -0.21 -3.67 11.40 33.18 0.38 -3.29 16 18 C 0.11 1.52 7.45 -16.78 -0.12 1.39 16 19 Cl -0.01 -0.15 27.95 -51.86 -1.45 -1.60 16 20 C -0.10 -1.30 5.75 -106.80 -0.61 -1.91 16 21 C -0.05 -0.44 9.59 -39.32 -0.38 -0.81 16 22 C -0.15 -1.02 10.03 -39.71 -0.40 -1.42 16 23 C 0.13 1.14 11.14 -17.38 -0.19 0.95 16 24 N -0.43 -5.78 7.81 -10.79 -0.08 -5.86 16 25 C 0.11 1.68 6.36 -84.72 -0.54 1.14 16 26 C 0.07 1.47 3.89 -3.83 -0.01 1.46 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.10 2.47 6.15 -51.93 -0.32 2.15 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.50 5.50 -51.93 -0.29 1.22 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.15 0.96 7.25 -52.49 -0.38 0.58 16 35 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.05 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.08 1.80 7.74 -51.93 -0.40 1.39 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -30.61 324.60 -9.64 -40.24 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.31 Total: -1.83 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -4.18 Total: -9.78 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.43 Total: -48.21 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.45 Total: -1.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.61 -9.64 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.150 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds