Wall clock time and date at job start Tue Mar 31 2020 12:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00296 * 2 1 4 4 H 1.48498 * 109.47155 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47189 * 119.99953 * 3 2 1 7 7 C 1.37879 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99764 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50915 * 60.07781 * 9 7 2 11 11 C 1.53117 * 109.50285 * 299.99456 * 9 7 2 12 12 C 1.53123 * 109.15910 * 182.40514 * 11 9 7 13 13 C 1.53044 * 109.27652 * 57.65862 * 12 11 9 14 14 N 1.46842 * 109.52169 * 300.82023 * 13 12 11 15 15 C 1.38688 * 111.00103 * 185.84114 * 14 13 12 16 16 N 1.31984 * 120.55802 * 236.04809 * 15 14 13 17 17 N 1.28087 * 123.35425 * 179.72272 * 16 15 14 18 18 C 1.31464 * 123.34488 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 120.47566 * 179.97438 * 18 17 16 20 20 C 1.40691 * 119.05288 * 359.97438 * 18 17 16 21 21 C 1.40373 * 122.82411 * 179.97438 * 20 18 17 22 22 C 1.36752 * 117.87842 * 180.02562 * 21 20 18 23 23 C 1.39339 * 119.98388 * 0.02562 * 22 21 20 24 24 N 1.31275 * 121.82589 * 359.97438 * 23 22 21 25 25 C 1.33033 * 121.06509 * 359.97438 * 24 23 22 26 26 C 1.46843 * 111.19988 * 61.74138 * 14 13 12 27 27 H 0.96995 * 119.99261 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52277 * 62.50689 * 11 9 7 29 29 H 1.09000 * 109.57918 * 302.34186 * 11 9 7 30 30 H 1.08993 * 109.50478 * 297.71341 * 12 11 9 31 31 H 1.08999 * 109.50374 * 177.59725 * 12 11 9 32 32 H 1.08997 * 109.45621 * 180.79955 * 13 12 11 33 33 H 1.09004 * 109.45407 * 60.82952 * 13 12 11 34 34 H 1.07995 * 121.06189 * 0.02562 * 21 20 18 35 35 H 1.07994 * 120.01034 * 179.97438 * 22 21 20 36 36 H 1.07996 * 119.08453 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.46055 * 58.27738 * 26 14 13 38 38 H 1.09003 * 109.46132 * 178.24183 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6254 -2.5583 -0.8901 11 6 0.3699 -2.5807 1.2502 12 6 -0.3459 -3.9342 1.2730 13 6 0.6942 -5.0564 1.2417 14 7 1.5109 -4.9348 0.0274 15 6 2.3771 -6.0105 -0.0988 16 7 3.6775 -5.8153 -0.2121 17 7 4.5254 -6.7684 -0.3263 18 6 4.1869 -8.0387 -0.3428 19 17 5.3994 -9.2709 -0.5018 20 6 2.8281 -8.3851 -0.2297 21 6 2.3785 -9.7149 -0.2387 22 6 1.0340 -9.9362 -0.1228 23 6 0.1589 -8.8588 -0.0014 24 7 0.5860 -7.6175 0.0063 25 6 1.8818 -7.3367 -0.1019 26 6 2.2446 -3.6630 0.0061 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3680 -1.7788 1.2287 29 1 0.9899 -2.4815 2.1413 30 1 -0.9964 -4.0165 0.4024 31 1 -0.9417 -4.0155 2.1821 32 1 0.1873 -6.0214 1.2435 33 1 1.3357 -4.9815 2.1198 34 1 3.0724 -10.5370 -0.3341 35 1 0.6505 -10.9458 -0.1261 36 1 -0.9001 -9.0502 0.0897 37 1 2.8789 -3.5949 0.8900 38 1 2.8640 -3.6160 -0.8896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:01 Heat of formation + Delta-G solvation = 73.529622 kcal Electronic energy + Delta-G solvation = -24121.078992 eV Core-core repulsion = 20603.257572 eV Total energy + Delta-G solvation = -3517.821421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.97299 -40.34463 -39.76309 -38.04330 -36.17635 -34.48539 -33.71961 -33.05515 -31.75711 -31.20950 -27.20167 -26.82800 -26.05305 -24.92057 -23.50910 -23.05745 -20.79600 -20.06152 -19.58333 -18.93437 -18.12389 -17.37789 -16.95954 -16.56998 -16.51693 -15.91535 -15.63108 -15.42124 -14.84734 -14.65504 -14.63099 -14.39163 -14.21578 -13.85852 -13.60590 -13.30829 -12.86798 -12.77022 -12.69900 -12.58444 -12.52795 -11.97252 -11.90682 -11.82885 -11.48870 -11.21506 -11.05141 -10.93027 -10.69030 -10.63481 -10.40256 -10.37466 -9.29726 -8.10417 -6.24115 -1.04813 -0.75409 0.39011 0.48411 1.41724 1.43153 1.50923 1.62843 2.19259 2.45047 2.61627 2.74505 3.00472 3.16835 3.23826 3.49539 3.64175 3.80158 3.91949 4.06288 4.14197 4.24989 4.35738 4.41917 4.52223 4.57610 4.73755 4.75677 4.88576 4.94236 4.98210 5.05864 5.25664 5.40258 5.42340 5.61191 5.65948 5.87586 5.96945 6.10825 6.35613 6.57438 6.84187 7.43229 7.52877 8.94469 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.003653 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.007127 B = 7663.109842 C = 8886.619179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.054 3.946 10 H 0.002 0.998 11 C -0.107 4.107 12 C -0.105 4.105 13 C 0.068 3.932 14 N -0.454 5.454 15 C 0.306 3.694 16 N -0.324 5.324 17 N -0.255 5.255 18 C 0.121 3.879 19 Cl 0.019 6.981 20 C -0.114 4.114 21 C -0.047 4.047 22 C -0.118 4.118 23 C 0.143 3.857 24 N -0.467 5.467 25 C 0.095 3.905 26 C 0.090 3.910 27 H 0.263 0.737 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.033 0.967 34 H 0.181 0.819 35 H 0.205 0.795 36 H 0.213 0.787 37 H 0.032 0.968 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -26.772 2.170 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.035 3.965 10 H 0.020 0.980 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.056 4.056 14 N -0.169 5.169 15 C 0.055 3.945 16 N -0.165 5.165 17 N -0.087 5.087 18 C -0.067 4.067 19 Cl 0.047 6.953 20 C -0.124 4.124 21 C -0.074 4.074 22 C -0.138 4.138 23 C -0.028 4.028 24 N -0.177 5.177 25 C -0.038 4.038 26 C -0.036 4.036 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.051 0.949 34 H 0.198 0.802 35 H 0.222 0.778 36 H 0.230 0.770 37 H 0.051 0.949 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.264 -24.704 1.786 24.770 hybrid contribution 0.807 -0.119 0.145 0.829 sum 0.543 -24.823 1.931 24.904 Atomic orbital electron populations 1.69997 1.06948 1.27325 1.50706 1.25642 0.95715 1.02064 0.94473 0.85677 0.78484 0.79148 0.78738 1.19999 1.20417 1.19724 1.21377 0.92905 0.91962 1.51621 0.93401 1.18635 0.92661 0.90664 0.94501 0.98027 1.21533 0.99290 0.96663 0.97060 1.21607 0.96892 0.93458 1.02363 1.22494 0.94657 1.02705 0.85757 1.58599 1.20175 1.01125 1.36988 1.22037 0.90126 0.90954 0.91390 1.72948 0.99849 1.23900 1.19830 1.72051 1.28970 0.97653 1.10055 1.23697 0.89382 0.91471 1.02121 1.98386 1.53961 1.47501 1.95498 1.19431 0.91894 0.97663 1.03401 1.21856 0.98518 0.93336 0.93723 1.22729 0.92269 1.03523 0.95283 1.24236 1.03610 0.86034 0.88914 1.68007 1.12313 1.24780 1.12583 1.19094 0.91552 0.91510 1.01655 1.22036 0.95305 0.86262 0.99969 0.92812 0.91250 0.95455 0.92095 0.89347 0.86199 0.94896 0.80196 0.77819 0.77042 0.94919 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.03 11.35 21.45 0.24 -52.79 16 2 C 0.02 1.16 5.30 84.65 0.45 1.61 16 3 Si 0.95 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.28 8.56 25.60 0.22 -31.06 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.89 2.27 -11.49 -0.03 2.86 16 10 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 11 C -0.11 -5.17 5.02 30.67 0.15 -5.01 16 12 C -0.11 -3.99 6.09 30.65 0.19 -3.80 16 13 C 0.07 2.44 5.17 86.33 0.45 2.89 16 14 N -0.45 -18.72 4.63 -700.13 -3.24 -21.96 16 15 C 0.31 11.77 6.52 133.90 0.87 12.65 16 16 N -0.32 -13.42 9.81 -54.23 -0.53 -13.95 16 17 N -0.25 -9.39 11.40 -48.95 -0.56 -9.95 16 18 C 0.12 3.42 7.45 85.35 0.64 4.05 16 19 Cl 0.02 0.38 27.95 -2.72 -0.08 0.30 16 20 C -0.11 -2.79 5.75 -21.28 -0.12 -2.91 16 21 C -0.05 -0.61 9.59 22.44 0.22 -0.40 16 22 C -0.12 -0.86 10.03 22.19 0.22 -0.64 16 23 C 0.14 1.78 11.14 85.04 0.95 2.73 16 24 N -0.47 -11.48 7.81 -188.05 -1.47 -12.95 16 25 C 0.10 2.87 6.36 40.66 0.26 3.13 16 26 C 0.09 4.34 3.89 86.33 0.34 4.67 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.07 3.71 6.15 -2.39 -0.01 3.70 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.12 3.69 5.50 -2.39 -0.01 3.68 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.18 1.28 7.25 -2.91 -0.02 1.26 16 35 H 0.20 -0.63 8.06 -2.91 -0.02 -0.65 16 36 H 0.21 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.03 1.61 8.12 -2.39 -0.02 1.59 16 38 H 0.06 2.88 7.74 -2.39 -0.02 2.86 16 Total: -1.00 -74.33 324.60 2.29 -72.04 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.10 Total: 1.56 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 4.80 Total: -9.23 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -5.56 Total: -111.60 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -74.33 2.29 -72.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.570 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds