Wall clock time and date at job start Tue Mar 31 2020 12:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36875 * 119.99756 * 2 1 4 4 H 1.08009 * 119.99749 * 201.58821 * 3 2 1 5 5 C 1.38772 * 120.00712 * 21.58730 * 3 2 1 6 6 N 1.31604 * 119.99754 * 9.18276 * 5 3 2 7 7 Si 1.86798 * 120.00440 * 189.18417 * 5 3 2 8 8 H 1.48501 * 109.47060 * 59.99970 * 7 5 3 9 9 H 1.48502 * 109.47128 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47120 * 299.99702 * 7 5 3 11 11 C 1.38983 * 119.99916 * 179.97438 * 2 1 3 12 12 N 1.32455 * 119.66472 * 267.05153 * 11 2 1 13 13 C 1.31864 * 121.69252 * 179.97438 * 12 11 2 14 14 C 1.38667 * 120.80915 * 359.97438 * 13 12 11 15 15 O 1.35961 * 120.38305 * 179.72834 * 14 13 12 16 16 C 1.42904 * 116.99785 * 0.02562 * 15 14 13 17 17 C 1.50698 * 109.47026 * 180.02562 * 16 15 14 18 18 C 1.38231 * 120.00003 * 269.72618 * 17 16 15 19 19 C 1.38229 * 120.00106 * 179.76394 * 18 17 16 20 20 C 1.38237 * 119.99760 * 0.51190 * 19 18 17 21 21 C 1.38234 * 120.00065 * 359.74225 * 20 19 18 22 22 C 1.38228 * 119.99937 * 0.02562 * 21 20 19 23 23 C 1.39250 * 119.23759 * 0.02562 * 14 13 12 24 24 C 1.38400 * 118.45113 * 359.97438 * 23 14 13 25 25 Cl 1.73605 * 120.43344 * 180.02562 * 24 23 14 26 26 H 1.08998 * 109.46567 * 276.05276 * 1 2 3 27 27 H 1.08999 * 109.46809 * 36.05256 * 1 2 3 28 28 H 1.08999 * 109.47149 * 156.05808 * 1 2 3 29 29 H 0.96996 * 119.99950 * 180.02562 * 6 5 3 30 30 H 1.08003 * 119.59462 * 179.97438 * 13 12 11 31 31 H 1.09000 * 109.47226 * 300.00385 * 16 15 14 32 32 H 1.08994 * 109.46778 * 60.00063 * 16 15 14 33 33 H 1.08002 * 120.00106 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.00512 * 180.22725 * 19 18 17 35 35 H 1.08006 * 119.99795 * 179.71886 * 20 19 18 36 36 H 1.08001 * 119.99823 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.00238 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.77423 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1727 1.2182 -0.3442 5 6 1.5286 2.3451 0.4421 6 7 0.3520 2.2793 1.0279 7 14 2.3630 3.9996 0.2058 8 1 2.5832 4.2405 -1.2429 9 1 1.4995 5.0731 0.7600 10 1 3.6694 4.0005 0.9120 11 6 2.1600 -1.2036 0.0005 12 7 2.5390 -1.7412 1.1502 13 6 3.1995 -2.8815 1.1973 14 6 3.5227 -3.5638 0.0341 15 8 4.2088 -4.7361 0.0925 16 6 4.5685 -5.2133 1.3906 17 6 5.3179 -6.5139 1.2578 18 6 4.6294 -7.7125 1.2675 19 6 5.3164 -8.9053 1.1408 20 6 6.6930 -8.9000 1.0150 21 6 7.3821 -7.7017 1.0105 22 6 6.6946 -6.5087 1.1324 23 6 3.1418 -3.0312 -1.1948 24 6 2.4497 -1.8327 -1.2081 25 17 1.9493 -1.1228 -2.7112 26 1 -0.3632 0.1084 1.0219 27 1 -0.3633 0.8308 -0.6048 28 1 -0.3633 -0.9392 -0.4170 29 1 -0.0821 3.0899 1.3366 30 1 3.4925 -3.2891 2.1536 31 1 5.2028 -4.4777 1.8853 32 1 3.6668 -5.3718 1.9821 33 1 3.5542 -7.7168 1.3699 34 1 4.7781 -9.8416 1.1447 35 1 7.2302 -9.8322 0.9205 36 1 8.4576 -7.6976 0.9126 37 1 7.2330 -5.5724 1.1294 38 1 3.3809 -3.5415 -2.1162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:57 Heat of formation + Delta-G solvation = 54.272778 kcal Electronic energy + Delta-G solvation = -22897.128710 eV Core-core repulsion = 19346.179498 eV Total energy + Delta-G solvation = -3550.949211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36580 -39.43317 -37.94859 -35.87794 -35.23683 -32.63653 -31.45766 -31.33757 -31.19580 -28.48591 -26.72124 -25.97819 -23.86826 -23.07334 -22.87850 -21.44515 -21.05473 -18.11787 -17.40235 -17.27100 -16.51321 -16.14936 -15.89251 -15.38104 -14.78077 -14.73301 -14.22532 -13.95993 -13.73934 -13.62045 -13.26151 -13.02215 -12.85977 -12.59181 -12.28744 -12.04155 -11.61987 -11.33190 -11.32114 -11.10118 -10.95518 -10.87512 -10.60298 -10.43257 -10.19244 -10.02757 -9.20792 -9.17958 -9.04220 -8.94559 -8.60632 -7.79647 -7.06744 -5.82858 -3.34308 0.92820 1.11768 1.44472 1.69323 2.58086 3.21000 3.37553 3.41237 3.42949 3.75081 4.18708 4.34860 4.48966 4.51894 4.70755 4.78401 4.82191 4.91442 4.96067 5.12059 5.21725 5.22307 5.35138 5.42661 5.52178 5.65568 5.74645 5.76839 6.09689 6.14662 6.20648 6.29012 6.33083 6.56427 6.67816 6.74478 7.33091 7.39753 7.67469 7.74937 8.26192 8.65082 9.10565 9.75508 10.14002 11.20801 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.002789 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.331016 B =10035.995755 C =10392.145944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.536 5.536 3 C -0.252 4.252 4 H 0.072 0.928 5 C 0.013 3.987 6 N -0.900 5.900 7 Si 0.913 3.087 8 H -0.280 1.280 9 H -0.288 1.288 10 H -0.281 1.281 11 C 0.385 3.615 12 N -0.449 5.449 13 C 0.029 3.971 14 C 0.051 3.949 15 O -0.307 6.307 16 C 0.099 3.901 17 C -0.091 4.091 18 C -0.095 4.095 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.095 4.095 23 C -0.102 4.102 24 C -0.060 4.060 25 Cl -0.046 7.046 26 H 0.040 0.960 27 H 0.057 0.943 28 H -0.001 1.001 29 H 0.257 0.743 30 H 0.150 0.850 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -19.985 -0.904 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.255 5.255 3 C -0.380 4.380 4 H 0.090 0.910 5 C -0.187 4.187 6 N -0.543 5.543 7 Si 0.742 3.258 8 H -0.206 1.206 9 H -0.214 1.214 10 H -0.207 1.207 11 C 0.155 3.845 12 N -0.162 5.162 13 C -0.131 4.131 14 C 0.004 3.996 15 O -0.221 6.221 16 C 0.024 3.976 17 C -0.091 4.091 18 C -0.113 4.113 19 C -0.143 4.143 20 C -0.131 4.131 21 C -0.143 4.143 22 C -0.113 4.113 23 C -0.129 4.129 24 C -0.093 4.093 25 Cl -0.017 7.017 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.018 0.982 29 H 0.067 0.933 30 H 0.167 0.833 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.914 -19.402 -0.338 21.355 hybrid contribution 0.643 0.507 -0.594 1.012 sum 9.557 -18.895 -0.932 21.195 Atomic orbital electron populations 1.20928 0.79830 0.96057 1.00382 1.41406 1.02497 0.98200 1.83412 1.19049 0.98072 0.83446 1.37443 0.91039 1.25099 0.97278 0.98815 0.97484 1.70068 1.15630 1.27590 1.40986 0.86203 0.78672 0.82802 0.78090 1.20637 1.21368 1.20713 1.18368 0.91897 0.88525 0.85695 1.68216 1.08842 1.08806 1.30345 1.22861 0.99962 0.93580 0.96702 1.19735 0.97496 0.87762 0.94617 1.86082 1.70433 1.35552 1.29997 1.21570 0.98784 0.92994 0.84246 1.19529 0.93750 0.93605 1.02242 1.21124 1.00093 0.91872 0.98240 1.21161 0.94508 0.98024 1.00584 1.21228 0.94516 0.98134 0.99267 1.21164 1.00080 0.92408 1.00611 1.21134 0.93595 0.98595 0.97984 1.20559 1.00396 0.95056 0.96897 1.22574 1.01730 0.95721 0.89303 1.98339 1.89755 1.83581 1.30039 0.94191 0.92432 0.98245 0.93272 0.83304 0.90920 0.90938 0.85679 0.85809 0.85983 0.85802 0.85659 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.31 8.94 59.85 0.54 4.84 16 2 N -0.54 -13.90 2.42 -122.39 -0.30 -14.20 16 3 C -0.25 -6.99 9.67 -15.10 -0.15 -7.13 16 4 H 0.07 1.98 7.85 -52.48 -0.41 1.57 16 5 C 0.01 0.36 5.19 -17.45 -0.09 0.27 16 6 N -0.90 -25.80 10.41 55.49 0.58 -25.22 16 7 Si 0.91 21.79 29.56 -169.99 -5.03 16.77 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.39 8.93 6.00 -154.93 -0.93 8.00 16 12 N -0.45 -9.98 10.39 -12.25 -0.13 -10.10 16 13 C 0.03 0.51 10.21 -17.38 -0.18 0.33 16 14 C 0.05 0.83 6.71 -39.05 -0.26 0.57 16 15 O -0.31 -4.32 10.13 -19.62 -0.20 -4.52 16 16 C 0.10 1.08 4.87 36.00 0.18 1.25 16 17 C -0.09 -0.93 5.51 -104.63 -0.58 -1.51 16 18 C -0.10 -0.88 9.70 -39.59 -0.38 -1.27 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 21 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 22 C -0.10 -0.89 9.70 -39.59 -0.38 -1.28 16 23 C -0.10 -1.73 9.92 -39.15 -0.39 -2.12 16 24 C -0.06 -1.19 6.36 -39.13 -0.25 -1.44 16 25 Cl -0.05 -0.87 28.47 -51.86 -1.48 -2.35 16 26 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 27 H 0.06 1.51 7.20 -51.93 -0.37 1.13 16 28 H 0.00 -0.02 8.00 -51.93 -0.42 -0.44 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.15 2.09 6.30 -52.48 -0.33 1.76 16 31 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 32 H 0.07 0.70 7.61 -51.93 -0.40 0.31 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -31.24 344.21 -9.80 -41.05 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.38 Total: -3.05 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -4.07 Total: -3.56 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.15 Total: -49.52 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.52 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.48 Total: -2.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.24 -9.80 -41.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.318 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds