Wall clock time and date at job start Tue Mar 31 2020 12:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36875 * 119.99756 * 2 1 4 4 H 1.08009 * 119.99749 * 201.58821 * 3 2 1 5 5 C 1.38772 * 120.00712 * 21.58730 * 3 2 1 6 6 N 1.31604 * 119.99754 * 9.18276 * 5 3 2 7 7 Si 1.86798 * 120.00440 * 189.18417 * 5 3 2 8 8 H 1.48501 * 109.47060 * 59.99970 * 7 5 3 9 9 H 1.48502 * 109.47128 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47120 * 299.99702 * 7 5 3 11 11 C 1.38983 * 119.99916 * 179.97438 * 2 1 3 12 12 N 1.32455 * 119.66472 * 267.05153 * 11 2 1 13 13 C 1.31864 * 121.69252 * 179.97438 * 12 11 2 14 14 C 1.38667 * 120.80915 * 359.97438 * 13 12 11 15 15 O 1.35961 * 120.38305 * 179.72834 * 14 13 12 16 16 C 1.42904 * 116.99785 * 0.02562 * 15 14 13 17 17 C 1.50698 * 109.47026 * 180.02562 * 16 15 14 18 18 C 1.38231 * 120.00003 * 269.72618 * 17 16 15 19 19 C 1.38229 * 120.00106 * 179.76394 * 18 17 16 20 20 C 1.38237 * 119.99760 * 0.51190 * 19 18 17 21 21 C 1.38234 * 120.00065 * 359.74225 * 20 19 18 22 22 C 1.38228 * 119.99937 * 0.02562 * 21 20 19 23 23 C 1.39250 * 119.23759 * 0.02562 * 14 13 12 24 24 C 1.38400 * 118.45113 * 359.97438 * 23 14 13 25 25 Cl 1.73605 * 120.43344 * 180.02562 * 24 23 14 26 26 H 1.08998 * 109.46567 * 276.05276 * 1 2 3 27 27 H 1.08999 * 109.46809 * 36.05256 * 1 2 3 28 28 H 1.08999 * 109.47149 * 156.05808 * 1 2 3 29 29 H 0.96996 * 119.99950 * 180.02562 * 6 5 3 30 30 H 1.08003 * 119.59462 * 179.97438 * 13 12 11 31 31 H 1.09000 * 109.47226 * 300.00385 * 16 15 14 32 32 H 1.08994 * 109.46778 * 60.00063 * 16 15 14 33 33 H 1.08002 * 120.00106 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.00512 * 180.22725 * 19 18 17 35 35 H 1.08006 * 119.99795 * 179.71886 * 20 19 18 36 36 H 1.08001 * 119.99823 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.00238 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.77423 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1727 1.2182 -0.3442 5 6 1.5286 2.3451 0.4421 6 7 0.3520 2.2793 1.0279 7 14 2.3630 3.9996 0.2058 8 1 2.5832 4.2405 -1.2429 9 1 1.4995 5.0731 0.7600 10 1 3.6694 4.0005 0.9120 11 6 2.1600 -1.2036 0.0005 12 7 2.5390 -1.7412 1.1502 13 6 3.1995 -2.8815 1.1973 14 6 3.5227 -3.5638 0.0341 15 8 4.2088 -4.7361 0.0925 16 6 4.5685 -5.2133 1.3906 17 6 5.3179 -6.5139 1.2578 18 6 4.6294 -7.7125 1.2675 19 6 5.3164 -8.9053 1.1408 20 6 6.6930 -8.9000 1.0150 21 6 7.3821 -7.7017 1.0105 22 6 6.6946 -6.5087 1.1324 23 6 3.1418 -3.0312 -1.1948 24 6 2.4497 -1.8327 -1.2081 25 17 1.9493 -1.1228 -2.7112 26 1 -0.3632 0.1084 1.0219 27 1 -0.3633 0.8308 -0.6048 28 1 -0.3633 -0.9392 -0.4170 29 1 -0.0821 3.0899 1.3366 30 1 3.4925 -3.2891 2.1536 31 1 5.2028 -4.4777 1.8853 32 1 3.6668 -5.3718 1.9821 33 1 3.5542 -7.7168 1.3699 34 1 4.7781 -9.8416 1.1447 35 1 7.2302 -9.8322 0.9205 36 1 8.4576 -7.6976 0.9126 37 1 7.2330 -5.5724 1.1294 38 1 3.3809 -3.5415 -2.1162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:56 Heat of formation + Delta-G solvation = 38.372435 kcal Electronic energy + Delta-G solvation = -22897.818200 eV Core-core repulsion = 19346.179498 eV Total energy + Delta-G solvation = -3551.638702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69166 -40.29438 -39.17014 -37.39267 -37.04618 -33.71690 -33.26675 -32.63130 -31.81020 -30.05794 -28.03654 -27.60018 -25.61276 -24.41068 -23.50270 -22.82757 -22.15426 -19.40999 -19.14062 -18.42883 -17.79055 -17.44822 -17.09464 -16.35830 -16.14731 -15.88238 -15.76952 -15.32738 -15.00446 -14.72759 -14.32995 -14.22484 -14.11205 -13.90004 -13.79225 -13.26767 -12.98303 -12.94383 -12.83162 -12.55451 -12.34910 -12.13745 -12.05374 -11.99970 -11.91803 -11.84234 -10.84352 -10.45263 -10.37943 -9.83655 -9.81434 -9.27671 -9.03420 -7.88651 -5.44388 -0.02660 0.21981 0.24055 0.48958 1.12077 1.46571 1.49467 1.56002 2.18959 2.43787 2.68622 2.97661 3.08853 3.29049 3.56389 3.69231 3.84533 3.92082 3.99460 4.12642 4.25887 4.26683 4.32319 4.34330 4.56384 4.62581 4.73156 4.76933 4.89163 5.03814 5.14367 5.15525 5.31581 5.53262 5.56750 5.60228 5.61890 5.64136 6.06993 6.15511 6.27452 6.98558 7.13515 7.78737 8.15306 9.14256 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.002789 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.331016 B =10035.995755 C =10392.145944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.551 5.551 3 C -0.260 4.260 4 H 0.065 0.935 5 C -0.039 4.039 6 N -0.931 5.931 7 Si 0.975 3.025 8 H -0.274 1.274 9 H -0.288 1.288 10 H -0.278 1.278 11 C 0.347 3.653 12 N -0.484 5.484 13 C 0.030 3.970 14 C 0.080 3.920 15 O -0.306 6.306 16 C 0.091 3.909 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.109 4.109 23 C -0.097 4.097 24 C -0.062 4.062 25 Cl -0.043 7.043 26 H 0.010 0.990 27 H 0.038 0.962 28 H 0.019 0.981 29 H 0.253 0.747 30 H 0.183 0.817 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 -22.418 -1.251 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.272 5.272 3 C -0.388 4.388 4 H 0.082 0.918 5 C -0.235 4.235 6 N -0.576 5.576 7 Si 0.802 3.198 8 H -0.199 1.199 9 H -0.214 1.214 10 H -0.204 1.204 11 C 0.118 3.882 12 N -0.197 5.197 13 C -0.130 4.130 14 C 0.031 3.969 15 O -0.219 6.219 16 C 0.017 3.983 17 C -0.111 4.111 18 C -0.126 4.126 19 C -0.149 4.149 20 C -0.133 4.133 21 C -0.149 4.149 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.095 4.095 25 Cl -0.014 7.014 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.199 0.801 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.903 -21.884 -0.696 24.460 hybrid contribution 0.199 0.907 -0.470 1.041 sum 11.102 -20.977 -1.167 23.762 Atomic orbital electron populations 1.20579 0.80328 0.96125 0.98266 1.41350 1.02458 0.98997 1.84345 1.19175 0.97703 0.84864 1.37103 0.91750 1.25824 0.98011 1.01882 0.97746 1.70224 1.16940 1.27950 1.42478 0.85247 0.77598 0.78836 0.78159 1.19913 1.21358 1.20399 1.18440 0.93938 0.88963 0.86815 1.67992 1.10244 1.10853 1.30658 1.23295 0.98966 0.92087 0.98699 1.19689 0.95467 0.87817 0.93880 1.86122 1.69376 1.34016 1.32363 1.21869 0.99796 0.93749 0.82847 1.19561 0.94144 0.93419 1.03939 1.21334 1.00683 0.92139 0.98434 1.21477 0.94984 0.98498 0.99910 1.21597 0.94621 0.99045 0.98011 1.21469 1.01227 0.92195 1.00032 1.21332 0.93576 0.99491 0.98324 1.20800 0.99230 0.93979 0.98460 1.22412 1.02237 0.96278 0.88564 1.98335 1.89813 1.83794 1.29434 0.97125 0.94355 0.96224 0.93721 0.80064 0.89814 0.89567 0.84998 0.83792 0.83591 0.83892 0.85192 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.95 8.94 127.77 1.14 11.09 16 2 N -0.55 -29.27 2.42 -541.12 -1.31 -30.58 16 3 C -0.26 -14.73 9.67 84.03 0.81 -13.92 16 4 H 0.06 3.64 7.85 -2.91 -0.02 3.62 16 5 C -0.04 -2.18 5.19 84.85 0.44 -1.74 16 6 N -0.93 -55.19 10.41 21.64 0.23 -54.96 16 7 Si 0.97 45.58 29.56 68.60 2.03 47.60 16 8 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 C 0.35 16.14 6.00 133.09 0.80 16.94 16 12 N -0.48 -21.40 10.39 -192.68 -2.00 -23.40 16 13 C 0.03 0.99 10.21 84.79 0.87 1.85 16 14 C 0.08 2.38 6.71 22.62 0.15 2.53 16 15 O -0.31 -7.68 10.13 -93.11 -0.94 -8.63 16 16 C 0.09 1.74 4.87 71.24 0.35 2.09 16 17 C -0.11 -2.01 5.51 -19.87 -0.11 -2.12 16 18 C -0.11 -1.76 9.70 22.27 0.22 -1.54 16 19 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 20 C -0.11 -1.42 10.05 22.27 0.22 -1.20 16 21 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 22 C -0.11 -1.82 9.70 22.27 0.22 -1.61 16 23 C -0.10 -3.10 9.92 22.55 0.22 -2.87 16 24 C -0.06 -2.42 6.36 22.56 0.14 -2.27 16 25 Cl -0.04 -1.59 28.47 -2.72 -0.08 -1.67 16 26 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 27 H 0.04 2.08 7.20 -2.39 -0.02 2.07 16 28 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.18 4.62 6.30 -2.91 -0.02 4.60 16 31 H 0.08 1.43 7.62 -2.39 -0.02 1.41 16 32 H 0.09 1.42 7.61 -2.39 -0.02 1.40 16 33 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 36 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.17 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -68.78 344.21 4.92 -63.86 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.08 Total: 3.66 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.92 Total: 4.12 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -3.09 Total: -108.95 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.94 Total: -8.63 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -68.78 4.92 -63.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.237 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds