Wall clock time and date at job start Tue Mar 31 2020 12:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35665 * 117.00425 * 2 1 4 4 C 1.38823 * 119.62810 * 179.97438 * 3 2 1 5 5 C 1.38742 * 119.26930 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 120.72796 * 179.97438 * 5 4 3 7 7 C 1.38652 * 118.54133 * 0.02562 * 5 4 3 8 8 C 1.39024 * 119.19931 * 0.27183 * 7 5 4 9 9 N 1.38829 * 119.66540 * 179.72679 * 8 7 5 10 10 C 1.36914 * 120.00550 * 4.99903 * 9 8 7 11 11 H 1.08001 * 119.99428 * 319.08491 * 10 9 8 12 12 C 1.38805 * 120.00346 * 139.08142 * 10 9 8 13 13 N 1.31573 * 119.99730 * 341.85653 * 12 10 9 14 14 Si 1.86794 * 120.00063 * 161.85207 * 12 10 9 15 15 H 1.48506 * 109.47234 * 60.00404 * 14 12 10 16 16 H 1.48505 * 109.47125 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47696 * 300.00240 * 14 12 10 18 18 C 1.46506 * 119.99461 * 184.99728 * 9 8 7 19 19 C 1.50702 * 109.47014 * 84.85836 * 18 9 8 20 20 C 1.38225 * 120.00053 * 264.82041 * 19 18 9 21 21 C 1.38242 * 119.99930 * 179.76741 * 20 19 18 22 22 C 1.38229 * 119.99983 * 0.50398 * 21 20 19 23 23 C 1.38239 * 120.00023 * 359.74982 * 22 21 20 24 24 C 1.38237 * 119.99529 * 85.09251 * 19 18 9 25 25 N 1.32274 * 119.62268 * 0.02668 * 3 2 1 26 26 H 1.09000 * 109.47023 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46700 * 299.99609 * 1 2 3 28 28 H 1.08996 * 109.46646 * 59.99737 * 1 2 3 29 29 H 1.07997 * 120.37009 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.40347 * 179.97438 * 7 5 4 31 31 H 0.97004 * 119.99729 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.46997 * 204.85614 * 18 9 8 33 33 H 1.08994 * 109.47444 * 324.86026 * 18 9 8 34 34 H 1.08003 * 120.00196 * 359.97438 * 20 19 18 35 35 H 1.08000 * 120.00088 * 180.22902 * 21 20 19 36 36 H 1.08001 * 120.00402 * 179.72201 * 22 21 20 37 37 H 1.08004 * 119.99998 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.00493 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4318 1.2723 0.0005 5 6 4.0540 2.5124 0.0000 6 17 5.7856 2.6360 0.0013 7 6 3.2625 3.6507 -0.0005 8 6 1.8789 3.5147 0.0053 9 7 1.0771 4.6481 0.0105 10 6 1.6454 5.8893 -0.0933 11 1 2.5566 6.1124 0.4419 12 6 1.0506 6.8610 -0.8863 13 7 0.1722 6.5150 -1.8027 14 14 1.4971 8.6596 -0.6523 15 1 2.9514 8.8436 -0.8899 16 1 0.7289 9.4896 -1.6147 17 1 1.1655 9.0757 0.7341 18 6 -0.3773 4.5158 0.1272 19 6 -0.7573 4.4127 1.5819 20 6 -0.9323 3.1714 2.1642 21 6 -1.2762 3.0768 3.4998 22 6 -1.4551 4.2237 4.2503 23 6 -1.2852 5.4652 3.6666 24 6 -0.9362 5.5597 2.3324 25 7 1.3174 2.3134 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3632 0.5139 -0.8900 29 1 4.0199 0.3665 0.0014 30 1 3.7152 4.6313 -0.0005 31 1 -0.2437 7.1940 -2.3567 32 1 -0.8581 5.3895 -0.3129 33 1 -0.7038 3.6182 -0.3980 34 1 -0.7972 2.2753 1.5766 35 1 -1.4093 2.1068 3.9558 36 1 -1.7281 4.1499 5.2927 37 1 -1.4254 6.3613 4.2530 38 1 -0.8041 6.5297 1.8762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:02 Heat of formation + Delta-G solvation = 20.527531 kcal Electronic energy + Delta-G solvation = -24388.970061 eV Core-core repulsion = 20836.557546 eV Total energy + Delta-G solvation = -3552.412515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42764 -40.11849 -39.08484 -37.84146 -36.94764 -34.06497 -32.67548 -32.59286 -31.69330 -30.40748 -28.05381 -27.66769 -25.96311 -23.66250 -23.35122 -23.12884 -21.87698 -19.85104 -18.68141 -18.02405 -17.46051 -17.19985 -16.81846 -16.63943 -16.17163 -16.05859 -15.78081 -15.50143 -15.03918 -14.80903 -14.70696 -14.20969 -14.13387 -13.67140 -13.29357 -13.25289 -13.13721 -12.97086 -12.83005 -12.60035 -12.56201 -12.16193 -12.01183 -11.90490 -11.87536 -11.71227 -11.02424 -10.43841 -10.38062 -9.88912 -9.72921 -9.57781 -8.64165 -8.22644 -6.04379 0.42581 0.49026 0.58864 0.64861 1.00417 1.43146 1.45074 1.51991 2.20227 2.37810 2.77373 2.82042 3.08748 3.21481 3.94363 4.07162 4.13169 4.24244 4.30711 4.34545 4.41320 4.48971 4.53575 4.56759 4.65763 4.72610 4.83472 4.89907 5.09956 5.16857 5.23641 5.28586 5.30438 5.40061 5.45066 5.65995 5.66268 5.89053 6.06467 6.22194 6.32396 6.64042 7.04658 7.26114 7.80752 8.64698 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008704 B = 0.006687 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.225302 B = 4186.106950 C = 6128.992956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.313 6.313 3 C 0.369 3.631 4 C -0.294 4.294 5 C 0.082 3.918 6 Cl -0.052 7.052 7 C -0.282 4.282 8 C 0.409 3.591 9 N -0.418 5.418 10 C -0.331 4.331 11 H 0.085 0.915 12 C 0.009 3.991 13 N -0.887 5.887 14 Si 0.978 3.022 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.264 1.264 18 C 0.173 3.827 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.117 4.117 25 N -0.611 5.611 26 H 0.128 0.872 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.274 0.726 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -6.173 7.585 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.220 6.220 3 C 0.186 3.814 4 C -0.320 4.320 5 C 0.048 3.952 6 Cl -0.023 7.023 7 C -0.309 4.309 8 C 0.170 3.830 9 N -0.109 5.109 10 C -0.459 4.459 11 H 0.102 0.898 12 C -0.195 4.195 13 N -0.522 5.522 14 Si 0.801 3.199 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.188 1.188 18 C 0.049 3.951 19 C -0.105 4.105 20 C -0.133 4.133 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.135 4.135 25 N -0.347 5.347 26 H 0.146 0.854 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.168 0.832 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.353 -6.117 7.391 9.878 hybrid contribution 0.985 1.200 -0.502 1.632 sum -1.368 -4.917 6.889 8.573 Atomic orbital electron populations 1.23018 0.76434 1.04303 1.01741 1.86182 1.23854 1.23983 1.87982 1.19314 0.88637 0.84150 0.89339 1.20236 0.91806 0.97420 1.22542 1.20450 0.84624 0.93434 0.96644 1.98323 1.08928 1.98481 1.96579 1.20945 0.92505 0.98701 1.18759 1.18368 0.88094 0.85824 0.90740 1.42367 1.03676 1.01477 1.63405 1.19432 1.12019 0.86936 1.27540 0.89752 1.26167 0.96626 1.03994 0.92716 1.70086 1.28476 1.35791 1.17824 0.85216 0.78832 0.77256 0.78584 1.19173 1.20518 1.18835 1.20127 0.81831 1.01894 0.91222 1.20488 0.98901 0.94048 0.97022 1.21287 0.99244 0.96826 0.95984 1.21411 1.00130 0.99763 0.93524 1.21426 1.00036 0.91899 1.00821 1.21377 1.00125 0.99015 0.94204 1.21132 0.99486 0.97739 0.95176 1.66692 1.40326 0.97403 1.30304 0.85418 0.92855 0.93609 0.83199 0.85340 0.91683 0.89814 0.92748 0.86311 0.83994 0.83221 0.84193 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.38 113.37 1.18 2.24 16 2 O -0.31 -10.48 10.47 -89.82 -0.94 -11.42 16 3 C 0.37 14.39 7.48 84.77 0.63 15.02 16 4 C -0.29 -10.89 9.86 22.53 0.22 -10.67 16 5 C 0.08 3.17 6.36 22.49 0.14 3.31 16 6 Cl -0.05 -1.67 29.02 -2.72 -0.08 -1.75 16 7 C -0.28 -12.53 9.12 22.56 0.21 -12.32 16 8 C 0.41 19.25 7.31 133.03 0.97 20.22 16 9 N -0.42 -20.49 2.59 -522.05 -1.35 -21.84 16 10 C -0.33 -16.62 8.44 84.04 0.71 -15.91 16 11 H 0.08 4.22 6.78 -2.91 -0.02 4.20 16 12 C 0.01 0.45 4.95 84.87 0.42 0.87 16 13 N -0.89 -45.98 11.59 21.65 0.25 -45.73 16 14 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 15 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 16 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 18 C 0.17 7.96 5.06 85.63 0.43 8.40 16 19 C -0.10 -4.16 5.44 -19.87 -0.11 -4.27 16 20 C -0.11 -4.07 9.62 22.27 0.21 -3.86 16 21 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 22 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 23 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 24 C -0.12 -4.38 9.72 22.27 0.22 -4.17 16 25 N -0.61 -26.25 7.47 -306.38 -2.29 -28.54 16 26 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.05 1.46 6.37 -2.39 -0.02 1.45 16 28 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 29 H 0.15 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.13 5.85 6.40 -2.91 -0.02 5.83 16 31 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 32 H 0.08 4.20 5.70 -2.39 -0.01 4.19 16 33 H 0.05 2.55 7.37 -2.39 -0.02 2.53 16 34 H 0.12 4.21 5.84 -2.91 -0.02 4.19 16 35 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.10 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -56.80 339.26 4.62 -52.17 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 1.09 Total: 27.46 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.91 Total: -11.41 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -3.39 Total: -96.11 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.94 Total: -11.42 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -56.80 4.62 -52.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.700 kcal (2) G-P(sol) polarization free energy of solvation -56.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds