Wall clock time and date at job start Tue Mar 31 2020 12:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35790 * 116.99735 * 2 1 4 4 C 1.38987 * 120.87646 * 0.25404 * 3 2 1 5 5 C 1.38253 * 119.17761 * 180.25120 * 4 3 2 6 6 Cl 1.73605 * 119.50821 * 179.71984 * 5 4 3 7 7 N 1.32052 * 120.98120 * 359.73715 * 5 4 3 8 8 C 1.31911 * 121.91965 * 0.02562 * 7 5 4 9 9 C 1.38783 * 120.71093 * 359.97438 * 8 7 5 10 10 N 1.39481 * 120.52324 * 179.97438 * 9 8 7 11 11 C 1.36799 * 120.00251 * 90.00169 * 10 9 8 12 12 H 1.07996 * 119.99909 * 50.20886 * 11 10 9 13 13 C 1.38769 * 119.99953 * 230.21394 * 11 10 9 14 14 N 1.31614 * 119.99615 * 202.84943 * 13 11 10 15 15 Si 1.86795 * 120.00251 * 23.12232 * 13 11 10 16 16 H 1.48496 * 109.47309 * 174.02828 * 15 13 11 17 17 H 1.48500 * 109.46950 * 294.02998 * 15 13 11 18 18 H 1.48501 * 109.47150 * 54.02574 * 15 13 11 19 19 C 1.46506 * 120.00005 * 270.00144 * 10 9 8 20 20 C 1.50706 * 109.46978 * 276.06630 * 19 10 9 21 21 C 1.38233 * 119.99900 * 275.26207 * 20 19 10 22 22 C 1.38233 * 119.99959 * 179.76721 * 21 20 19 23 23 C 1.38239 * 119.99824 * 0.50478 * 22 21 20 24 24 C 1.38231 * 120.00108 * 359.74797 * 23 22 21 25 25 C 1.38226 * 119.99895 * 95.53617 * 20 19 10 26 26 H 1.08994 * 109.46942 * 300.00228 * 1 2 3 27 27 H 1.08996 * 109.46686 * 60.00110 * 1 2 3 28 28 H 1.08995 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.40942 * 359.96256 * 4 3 2 30 30 H 1.08006 * 119.64939 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00910 * 0.27051 * 14 13 11 32 32 H 1.08999 * 109.46986 * 36.06586 * 19 10 9 33 33 H 1.08995 * 109.47130 * 156.06819 * 19 10 9 34 34 H 1.08004 * 119.99942 * 359.97438 * 21 20 19 35 35 H 1.08008 * 120.00224 * 180.23320 * 22 21 20 36 36 H 1.08001 * 119.99721 * 179.72344 * 23 22 21 37 37 H 1.07993 * 120.00223 * 179.97438 * 24 23 22 38 38 H 1.08003 * 120.00372 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3064 2.3870 0.0053 5 6 1.9702 3.5997 -0.0002 6 17 1.0554 5.0752 -0.0010 7 7 3.2896 3.6524 -0.0051 8 6 4.0312 2.5614 -0.0056 9 6 3.4428 1.3045 -0.0003 10 7 4.2307 0.1535 -0.0013 11 6 4.6223 -0.4084 1.1829 12 1 3.8924 -0.6078 1.9534 13 6 5.9575 -0.7222 1.3939 14 7 6.2862 -1.6355 2.2828 15 14 7.2886 0.1571 0.4221 16 1 8.6232 -0.2495 0.9307 17 1 7.1744 -0.2053 -1.0134 18 1 7.1262 1.6251 0.5764 19 6 4.6389 -0.4536 -1.2706 20 6 3.5392 -1.3528 -1.7740 21 6 3.4526 -2.6571 -1.3243 22 6 2.4411 -3.4803 -1.7823 23 6 1.5222 -3.0025 -2.6980 24 6 1.6119 -1.6998 -3.1516 25 6 2.6205 -0.8749 -2.6895 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2268 2.3546 0.0089 30 1 5.1078 2.6472 -0.0101 31 1 5.5952 -2.0921 2.7875 32 1 4.8312 0.3303 -2.0031 33 1 5.5457 -1.0390 -1.1184 34 1 4.1734 -3.0319 -0.6126 35 1 2.3712 -4.4983 -1.4282 36 1 0.7345 -3.6471 -3.0592 37 1 0.8943 -1.3266 -3.8672 38 1 2.6904 0.1429 -3.0439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:26 Heat of formation + Delta-G solvation = 28.878826 kcal Electronic energy + Delta-G solvation = -24881.168902 eV Core-core repulsion = 21329.118526 eV Total energy + Delta-G solvation = -3552.050376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69949 -39.97985 -39.18568 -37.91049 -37.24976 -34.12251 -32.72707 -32.30294 -31.62882 -30.48493 -28.37622 -27.19697 -25.58723 -23.99147 -23.27132 -22.92243 -21.99327 -19.82410 -19.34898 -18.27777 -17.70119 -17.10555 -16.92601 -16.40194 -16.17499 -16.03168 -15.72135 -15.40359 -15.30010 -15.14608 -14.99317 -14.70419 -14.16187 -13.89558 -13.62214 -13.27885 -13.00274 -12.76748 -12.51136 -12.29228 -12.26907 -12.22247 -12.04298 -11.80751 -11.56130 -11.49612 -10.88909 -10.58240 -10.09350 -9.68618 -9.65707 -9.36563 -9.16684 -8.42902 -5.90078 -0.06931 0.27134 0.62933 0.66554 0.76004 1.48810 1.56071 1.75807 2.27638 2.51783 2.63548 2.86205 3.13896 3.31174 3.48901 3.85143 4.05993 4.08641 4.14349 4.19073 4.27734 4.32959 4.37262 4.43399 4.47802 4.58104 4.69862 4.73859 4.80059 4.89884 4.99590 5.27916 5.29900 5.37122 5.70491 5.74197 5.89119 5.98597 6.24780 6.29846 6.40090 6.73445 6.86241 7.51040 7.99816 8.70698 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.007001 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.821742 B = 3998.549694 C = 5883.774366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.296 6.296 3 C 0.159 3.841 4 C -0.235 4.235 5 C 0.184 3.816 6 Cl -0.024 7.024 7 N -0.511 5.511 8 C 0.118 3.882 9 C 0.106 3.894 10 N -0.541 5.541 11 C -0.337 4.337 12 H 0.007 0.993 13 C -0.024 4.024 14 N -0.927 5.927 15 Si 1.077 2.923 16 H -0.301 1.301 17 H -0.249 1.249 18 H -0.264 1.264 19 C 0.165 3.835 20 C -0.087 4.087 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.170 0.830 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.247 4.179 -11.208 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.206 6.206 3 C 0.102 3.898 4 C -0.258 4.258 5 C 0.019 3.981 6 Cl 0.004 6.996 7 N -0.227 5.227 8 C -0.038 4.038 9 C 0.010 3.990 10 N -0.259 5.259 11 C -0.466 4.466 12 H 0.025 0.975 13 C -0.224 4.224 14 N -0.563 5.563 15 Si 0.900 3.100 16 H -0.228 1.228 17 H -0.174 1.174 18 H -0.189 1.189 19 C 0.042 3.958 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.126 0.874 29 H 0.187 0.813 30 H 0.181 0.819 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.195 4.943 -11.390 16.718 hybrid contribution -2.130 -0.995 1.236 2.656 sum -13.324 3.948 -10.154 17.211 Atomic orbital electron populations 1.23367 0.77130 1.05127 1.02370 1.86360 1.22649 1.24861 1.86730 1.20266 0.92559 0.85105 0.91850 1.21900 1.02502 0.89682 1.11670 1.21392 0.89498 0.87553 0.99684 1.98366 1.70368 1.34264 1.96570 1.66965 1.05906 1.32956 1.16829 1.23152 1.00064 0.85782 0.94805 1.18491 0.88367 0.89924 1.02252 1.41102 1.59078 1.23717 1.02013 1.19438 0.91904 1.40716 0.94493 0.97507 1.27599 0.99950 0.96154 0.98727 1.71042 1.36488 1.22263 1.26536 0.83697 0.73199 0.76737 0.76415 1.22821 1.17421 1.18859 1.20599 0.94455 0.94418 0.86335 1.20551 0.98466 0.94394 0.95547 1.20942 0.99002 0.94570 0.98920 1.21255 0.95246 0.99823 0.98412 1.21282 0.99237 0.96267 0.97598 1.21273 0.98057 0.94037 1.00297 1.20965 0.95389 0.99350 0.97426 0.91929 0.90648 0.87380 0.81251 0.81940 0.93745 0.91779 0.92156 0.89571 0.85623 0.83754 0.83961 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.84 113.37 1.12 1.45 16 2 O -0.30 -10.30 8.94 -91.19 -0.82 -11.12 16 3 C 0.16 5.70 6.76 22.89 0.15 5.85 16 4 C -0.24 -6.97 8.87 22.45 0.20 -6.77 16 5 C 0.18 5.82 7.27 84.66 0.62 6.43 16 6 Cl -0.02 -0.62 29.10 -2.72 -0.08 -0.70 16 7 N -0.51 -18.51 10.33 -186.22 -1.92 -20.44 16 8 C 0.12 4.57 11.12 84.81 0.94 5.52 16 9 C 0.11 4.35 5.09 38.50 0.20 4.54 16 10 N -0.54 -24.51 1.63 -515.13 -0.84 -25.35 16 11 C -0.34 -18.38 9.59 84.05 0.81 -17.57 16 12 H 0.01 0.46 8.06 -2.91 -0.02 0.43 16 13 C -0.02 -1.33 5.15 84.85 0.44 -0.90 16 14 N -0.93 -55.90 13.71 21.64 0.30 -55.60 16 15 Si 1.08 48.64 26.94 68.60 1.85 50.49 16 16 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 17 H -0.25 -9.98 5.89 99.48 0.59 -9.39 16 18 H -0.26 -11.02 6.87 99.48 0.68 -10.34 16 19 C 0.17 6.76 4.36 85.63 0.37 7.14 16 20 C -0.09 -3.25 4.76 -19.87 -0.09 -3.34 16 21 C -0.12 -4.41 9.72 22.27 0.22 -4.19 16 22 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 23 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 24 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 25 C -0.11 -3.45 9.00 22.27 0.20 -3.25 16 26 H 0.06 1.28 7.70 -2.39 -0.02 1.26 16 27 H 0.08 1.36 7.72 -2.39 -0.02 1.34 16 28 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.17 3.81 6.46 -2.91 -0.02 3.79 16 30 H 0.16 6.21 7.82 -2.91 -0.02 6.19 16 31 H 0.25 15.59 8.73 -92.71 -0.81 14.78 16 32 H 0.06 2.34 8.00 -2.39 -0.02 2.32 16 33 H 0.06 2.67 4.97 -2.39 -0.01 2.66 16 34 H 0.09 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.11 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -65.10 340.06 5.22 -59.88 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.90 Total: 17.30 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.83 Total: -14.47 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -2.47 Total: -101.39 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.82 Total: -11.12 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.85 Total: 50.49 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -65.10 5.22 -59.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.763 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds