Wall clock time and date at job start Tue Mar 31 2020 12:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35751 * 117.00122 * 2 1 4 4 C 1.39412 * 120.79448 * 359.73283 * 3 2 1 5 5 C 1.38086 * 119.25385 * 179.74355 * 4 3 2 6 6 Cl 1.73596 * 119.55435 * 180.22619 * 5 4 3 7 7 N 1.32067 * 120.88908 * 0.53403 * 5 4 3 8 8 C 1.32596 * 121.74652 * 359.71872 * 7 5 4 9 9 N 1.38854 * 119.68163 * 179.97438 * 8 7 5 10 10 C 1.36917 * 120.00327 * 185.01810 * 9 8 7 11 11 H 1.08002 * 119.99897 * 318.43351 * 10 9 8 12 12 C 1.38811 * 119.99645 * 138.43985 * 10 9 8 13 13 N 1.31568 * 120.00218 * 342.08500 * 12 10 9 14 14 Si 1.86800 * 119.99740 * 162.09435 * 12 10 9 15 15 H 1.48500 * 109.47568 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47388 * 119.99771 * 14 12 10 17 17 H 1.48500 * 109.46942 * 239.99436 * 14 12 10 18 18 C 1.46505 * 119.99730 * 5.02077 * 9 8 7 19 19 C 1.50699 * 109.47199 * 84.43653 * 18 9 8 20 20 C 1.38236 * 120.00222 * 264.03306 * 19 18 9 21 21 C 1.38240 * 119.99872 * 179.76670 * 20 19 18 22 22 C 1.38234 * 119.99969 * 0.50924 * 21 20 19 23 23 C 1.38228 * 119.99941 * 359.74085 * 22 21 20 24 24 C 1.38233 * 120.00192 * 0.02562 * 23 22 21 25 25 C 1.38967 * 120.79425 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46408 * 299.99521 * 1 2 3 27 27 H 1.09001 * 109.47078 * 59.99265 * 1 2 3 28 28 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.37595 * 359.97438 * 4 3 2 30 30 H 0.96999 * 120.00284 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.46959 * 204.43735 * 18 9 8 32 32 H 1.08996 * 109.46994 * 324.43981 * 18 9 8 33 33 H 1.07998 * 119.99743 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.99623 * 180.23249 * 21 20 19 35 35 H 1.07998 * 119.99616 * 179.72767 * 22 21 20 36 36 H 1.08008 * 120.00268 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.00238 * 179.97438 * 24 23 22 38 38 H 1.08005 * 120.47437 * 0.02875 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3024 2.3892 -0.0056 5 6 1.9622 3.6022 0.0000 6 17 1.0447 5.0759 -0.0009 7 7 3.2817 3.6563 -0.0001 8 6 4.0250 2.5583 0.0001 9 7 5.4094 2.6652 -0.0005 10 6 6.1829 1.5402 -0.1041 11 1 5.9150 0.6484 0.4431 12 6 7.3115 1.5459 -0.9123 13 7 7.4543 2.4715 -1.8363 14 14 8.6274 0.2391 -0.6880 15 1 8.2314 -0.6789 0.4100 16 1 8.7790 -0.5320 -1.9480 17 1 9.9181 0.8898 -0.3475 18 6 6.0425 3.9818 0.1097 19 6 6.1455 4.3697 1.5622 20 6 5.1773 5.1744 2.1331 21 6 5.2692 5.5262 3.4668 22 6 6.3349 5.0820 4.2269 23 6 7.3058 4.2815 3.6547 24 6 7.2113 3.9257 2.3223 25 6 3.4320 1.3015 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2230 2.3547 -0.0104 30 1 8.2427 2.4753 -2.4013 31 1 7.0402 3.9429 -0.3276 32 1 5.4413 4.7196 -0.4216 33 1 4.3472 5.5254 1.5380 34 1 4.5108 6.1518 3.9137 35 1 6.4090 5.3605 5.2677 36 1 8.1387 3.9347 4.2485 37 1 7.9702 3.3007 1.8751 38 1 4.0401 0.4089 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166992721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:23 Heat of formation + Delta-G solvation = 30.578428 kcal Electronic energy + Delta-G solvation = -24120.293438 eV Core-core repulsion = 20568.316762 eV Total energy + Delta-G solvation = -3551.976675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.85613 -38.75385 -37.79316 -36.36035 -35.41247 -32.24954 -31.27704 -30.64296 -30.29464 -28.85768 -27.06797 -26.05337 -24.16495 -22.46113 -21.94035 -21.36168 -20.33246 -18.14489 -17.23002 -16.38069 -16.06336 -15.46309 -15.37594 -14.91303 -14.73512 -14.53380 -14.45824 -14.10811 -13.75105 -13.55659 -13.14212 -12.84325 -12.70120 -12.17149 -11.94777 -11.67285 -11.59242 -11.39167 -11.29690 -10.95181 -10.93052 -10.68692 -10.60708 -10.45793 -10.38463 -10.20742 -9.40023 -8.73064 -8.65402 -8.35138 -8.19464 -8.13405 -6.94049 -6.47999 -4.18209 1.88057 1.97430 2.02493 2.28863 2.41066 3.05008 3.13118 3.17322 3.59495 3.93023 4.30994 4.53929 4.78492 4.89728 5.26938 5.35219 5.40598 5.45265 5.55247 5.55407 5.70173 5.75756 5.82798 6.00348 6.08055 6.14612 6.24788 6.36791 6.57189 6.62086 6.71651 6.88598 6.99072 7.01388 7.01753 7.07938 7.28660 7.39632 7.59596 7.83572 7.96746 8.30392 8.74398 9.03346 9.57048 10.45459 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009292 B = 0.006187 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.722472 B = 4524.467142 C = 6399.040588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.204 3.796 4 C -0.350 4.350 5 C 0.268 3.732 6 Cl -0.066 7.066 7 N -0.572 5.572 8 C 0.423 3.577 9 N -0.401 5.401 10 C -0.317 4.317 11 H 0.093 0.907 12 C 0.044 3.956 13 N -0.853 5.853 14 Si 0.919 3.081 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.160 3.840 19 C -0.083 4.083 20 C -0.098 4.098 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.097 4.097 25 C -0.269 4.269 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.273 0.727 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 1.226 5.568 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.152 3.848 4 C -0.379 4.379 5 C 0.097 3.903 6 Cl -0.038 7.038 7 N -0.296 5.296 8 C 0.184 3.816 9 N -0.089 5.089 10 C -0.445 4.445 11 H 0.110 0.890 12 C -0.164 4.164 13 N -0.486 5.486 14 Si 0.745 3.255 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.202 1.202 18 C 0.036 3.964 19 C -0.085 4.085 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.115 4.115 25 C -0.297 4.297 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.436 1.980 5.371 7.894 hybrid contribution -0.170 -1.061 0.062 1.076 sum -5.606 0.918 5.433 7.860 Atomic orbital electron populations 1.22972 0.79014 1.03114 1.01382 1.86027 1.20911 1.27082 1.88553 1.18671 0.91560 0.83136 0.91481 1.20909 0.99896 0.90859 1.26201 1.20558 0.88976 0.85240 0.95499 1.98334 1.71464 1.37334 1.96685 1.66305 1.04733 1.32089 1.26474 1.18094 0.86131 0.86451 0.90898 1.42284 0.98522 1.06114 1.62011 1.19429 1.06256 0.92498 1.26362 0.88992 1.25506 0.99577 0.97980 0.93287 1.70010 1.28159 1.34242 1.16208 0.85981 0.80256 0.80509 0.78797 1.18850 1.20390 1.20217 1.20394 1.01331 0.84936 0.89694 1.20625 0.93967 0.95807 0.98060 1.21268 0.98308 0.97397 0.94739 1.21059 0.98256 1.01189 0.94612 1.20975 0.95445 0.99540 0.99123 1.21043 0.99146 0.99497 0.95398 1.21125 0.98266 0.98504 0.93648 1.20423 0.91020 0.98803 1.19426 0.92828 0.92774 0.88834 0.85666 0.91692 0.87559 0.91046 0.85586 0.87005 0.87146 0.86932 0.86152 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.84 101.05 0.99 1.36 16 2 O -0.31 -5.45 10.51 -18.96 -0.20 -5.65 16 3 C 0.20 4.01 6.73 -38.87 -0.26 3.75 16 4 C -0.35 -6.44 8.87 -39.20 -0.35 -6.78 16 5 C 0.27 5.27 7.27 -17.51 -0.13 5.14 16 6 Cl -0.07 -1.10 29.10 -51.86 -1.51 -2.61 16 7 N -0.57 -12.59 8.62 -9.61 -0.08 -12.67 16 8 C 0.42 9.90 7.30 -155.06 -1.13 8.77 16 9 N -0.40 -9.61 2.58 -116.37 -0.30 -9.91 16 10 C -0.32 -7.76 8.42 -15.07 -0.13 -7.89 16 11 H 0.09 2.24 6.82 -52.49 -0.36 1.88 16 12 C 0.04 1.06 4.95 -17.45 -0.09 0.97 16 13 N -0.85 -21.47 11.63 55.49 0.65 -20.83 16 14 Si 0.92 18.74 29.59 -169.99 -5.03 13.71 16 15 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 C 0.16 3.60 5.05 -5.19 -0.03 3.58 16 19 C -0.08 -1.69 5.43 -104.62 -0.57 -2.26 16 20 C -0.10 -1.86 9.60 -39.58 -0.38 -2.24 16 21 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 22 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 23 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 24 C -0.10 -1.84 9.72 -39.58 -0.38 -2.22 16 25 C -0.27 -6.01 9.27 -39.04 -0.36 -6.37 16 26 H 0.05 0.59 7.72 -51.93 -0.40 0.19 16 27 H 0.05 0.61 7.69 -51.93 -0.40 0.21 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.13 1.94 6.45 -52.49 -0.34 1.60 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.11 2.54 5.76 -51.93 -0.30 2.24 16 32 H 0.07 1.65 7.38 -51.93 -0.38 1.26 16 33 H 0.13 2.43 7.61 -52.49 -0.40 2.03 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 38 H 0.14 3.15 6.42 -52.48 -0.34 2.81 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -26.60 340.48 -9.51 -36.12 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.16 Total: 8.52 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -4.00 Total: -11.81 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.26 Total: -43.41 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.20 Total: -5.65 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.51 Total: -2.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.60 -9.51 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.696 kcal (2) G-P(sol) polarization free energy of solvation -26.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds