Wall clock time and date at job start Tue Mar 31 2020 12:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35751 * 117.00122 * 2 1 4 4 C 1.39412 * 120.79448 * 359.73283 * 3 2 1 5 5 C 1.38086 * 119.25385 * 179.74355 * 4 3 2 6 6 Cl 1.73596 * 119.55435 * 180.22619 * 5 4 3 7 7 N 1.32067 * 120.88908 * 0.53403 * 5 4 3 8 8 C 1.32596 * 121.74652 * 359.71872 * 7 5 4 9 9 N 1.38854 * 119.68163 * 179.97438 * 8 7 5 10 10 C 1.36917 * 120.00327 * 185.01810 * 9 8 7 11 11 H 1.08002 * 119.99897 * 318.43351 * 10 9 8 12 12 C 1.38811 * 119.99645 * 138.43985 * 10 9 8 13 13 N 1.31568 * 120.00218 * 342.08500 * 12 10 9 14 14 Si 1.86800 * 119.99740 * 162.09435 * 12 10 9 15 15 H 1.48500 * 109.47568 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47388 * 119.99771 * 14 12 10 17 17 H 1.48500 * 109.46942 * 239.99436 * 14 12 10 18 18 C 1.46505 * 119.99730 * 5.02077 * 9 8 7 19 19 C 1.50699 * 109.47199 * 84.43653 * 18 9 8 20 20 C 1.38236 * 120.00222 * 264.03306 * 19 18 9 21 21 C 1.38240 * 119.99872 * 179.76670 * 20 19 18 22 22 C 1.38234 * 119.99969 * 0.50924 * 21 20 19 23 23 C 1.38228 * 119.99941 * 359.74085 * 22 21 20 24 24 C 1.38233 * 120.00192 * 0.02562 * 23 22 21 25 25 C 1.38967 * 120.79425 * 180.02562 * 3 2 1 26 26 H 1.09005 * 109.46408 * 299.99521 * 1 2 3 27 27 H 1.09001 * 109.47078 * 59.99265 * 1 2 3 28 28 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.37595 * 359.97438 * 4 3 2 30 30 H 0.96999 * 120.00284 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.46959 * 204.43735 * 18 9 8 32 32 H 1.08996 * 109.46994 * 324.43981 * 18 9 8 33 33 H 1.07998 * 119.99743 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.99623 * 180.23249 * 21 20 19 35 35 H 1.07998 * 119.99616 * 179.72767 * 22 21 20 36 36 H 1.08008 * 120.00268 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.00238 * 179.97438 * 24 23 22 38 38 H 1.08005 * 120.47437 * 0.02875 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.3024 2.3892 -0.0056 5 6 1.9622 3.6022 0.0000 6 17 1.0447 5.0759 -0.0009 7 7 3.2817 3.6563 -0.0001 8 6 4.0250 2.5583 0.0001 9 7 5.4094 2.6652 -0.0005 10 6 6.1829 1.5402 -0.1041 11 1 5.9150 0.6484 0.4431 12 6 7.3115 1.5459 -0.9123 13 7 7.4543 2.4715 -1.8363 14 14 8.6274 0.2391 -0.6880 15 1 8.2314 -0.6789 0.4100 16 1 8.7790 -0.5320 -1.9480 17 1 9.9181 0.8898 -0.3475 18 6 6.0425 3.9818 0.1097 19 6 6.1455 4.3697 1.5622 20 6 5.1773 5.1744 2.1331 21 6 5.2692 5.5262 3.4668 22 6 6.3349 5.0820 4.2269 23 6 7.3058 4.2815 3.6547 24 6 7.2113 3.9257 2.3223 25 6 3.4320 1.3015 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2230 2.3547 -0.0104 30 1 8.2427 2.4753 -2.4013 31 1 7.0402 3.9429 -0.3276 32 1 5.4413 4.7196 -0.4216 33 1 4.3472 5.5254 1.5380 34 1 4.5108 6.1518 3.9137 35 1 6.4090 5.3605 5.2677 36 1 8.1387 3.9347 4.2485 37 1 7.9702 3.3007 1.8751 38 1 4.0401 0.4089 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:22 Heat of formation + Delta-G solvation = 18.873430 kcal Electronic energy + Delta-G solvation = -24120.801004 eV Core-core repulsion = 20568.316762 eV Total energy + Delta-G solvation = -3552.484242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41381 -40.17485 -39.23509 -37.89075 -36.98435 -34.00521 -32.81937 -32.16130 -31.66167 -30.43196 -28.24830 -27.74221 -25.79822 -24.06431 -23.31517 -22.87587 -21.84618 -19.73555 -18.85554 -17.91614 -17.46039 -17.11889 -16.69397 -16.44928 -16.28510 -16.03662 -15.92332 -15.55359 -15.32566 -15.07406 -14.66609 -14.23936 -14.14113 -13.66568 -13.30098 -13.21916 -13.07924 -12.96528 -12.68107 -12.56791 -12.33705 -12.14439 -12.05884 -11.99861 -11.84992 -11.73197 -11.10830 -10.38398 -10.31124 -9.73925 -9.70239 -9.56424 -8.71040 -8.25604 -6.05107 0.37296 0.52373 0.60713 0.69708 0.89399 1.41818 1.43190 1.55793 2.19461 2.33411 2.79673 2.86164 3.11839 3.24511 4.05284 4.09842 4.15209 4.20008 4.26508 4.37663 4.39725 4.43060 4.45051 4.56269 4.67010 4.75915 4.78001 4.86729 5.01779 5.17070 5.22415 5.24982 5.29428 5.36027 5.50200 5.66989 5.68213 5.93008 6.14168 6.24137 6.42972 6.55558 7.02066 7.25439 7.81402 8.65435 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009292 B = 0.006187 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.722472 B = 4524.467142 C = 6399.040588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.214 3.786 4 C -0.336 4.336 5 C 0.253 3.747 6 Cl -0.036 7.036 7 N -0.586 5.586 8 C 0.408 3.592 9 N -0.420 5.420 10 C -0.329 4.329 11 H 0.084 0.916 12 C 0.007 3.993 13 N -0.888 5.888 14 Si 0.981 3.019 15 H -0.260 1.260 16 H -0.279 1.279 17 H -0.271 1.271 18 C 0.174 3.826 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.300 4.300 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.161 0.839 30 H 0.274 0.726 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.057 1.192 7.667 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.161 3.839 4 C -0.363 4.363 5 C 0.084 3.916 6 Cl -0.007 7.007 7 N -0.311 5.311 8 C 0.170 3.830 9 N -0.111 5.111 10 C -0.457 4.457 11 H 0.101 0.899 12 C -0.197 4.197 13 N -0.523 5.523 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.196 1.196 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.328 4.328 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.125 0.875 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.159 1.946 7.479 10.535 hybrid contribution 0.053 -1.019 -0.552 1.160 sum -7.106 0.927 6.927 9.967 Atomic orbital electron populations 1.23421 0.75852 1.05762 1.02612 1.86029 1.24075 1.25850 1.87902 1.18673 0.90853 0.84555 0.89805 1.21247 1.01517 0.89716 1.23824 1.21010 0.88644 0.87085 0.94888 1.98337 1.70290 1.35618 1.96492 1.66357 1.05920 1.31795 1.27040 1.18330 0.86271 0.87313 0.91059 1.42369 0.98917 1.06159 1.63618 1.19501 1.06989 0.92720 1.26495 0.89869 1.26230 1.01046 0.99736 0.92690 1.70105 1.28840 1.36052 1.17303 0.85058 0.77863 0.78154 0.78529 1.18405 1.20445 1.19570 1.20105 0.99332 0.84194 0.91343 1.20478 0.95541 0.97520 0.96982 1.21228 0.97839 0.97942 0.96092 1.21397 0.99209 1.00813 0.93430 1.21424 0.94042 0.97834 1.00804 1.21378 1.00227 0.98842 0.94226 1.21133 0.97911 0.99296 0.95142 1.20438 0.92583 0.97977 1.21817 0.91382 0.91591 0.85724 0.82117 0.91658 0.89865 0.92991 0.86763 0.84140 0.83107 0.83976 0.87537 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.84 113.37 1.12 1.48 16 2 O -0.33 -10.83 10.51 -90.77 -0.95 -11.78 16 3 C 0.21 8.32 6.73 22.73 0.15 8.47 16 4 C -0.34 -11.72 8.87 22.52 0.20 -11.52 16 5 C 0.25 9.78 7.27 84.62 0.61 10.40 16 6 Cl -0.04 -1.12 29.10 -2.72 -0.08 -1.20 16 7 N -0.59 -26.45 8.62 -184.32 -1.59 -28.04 16 8 C 0.41 19.96 7.30 133.02 0.97 20.94 16 9 N -0.42 -21.40 2.58 -522.09 -1.35 -22.75 16 10 C -0.33 -17.05 8.42 84.04 0.71 -16.34 16 11 H 0.08 4.32 6.82 -2.91 -0.02 4.30 16 12 C 0.01 0.35 4.95 84.87 0.42 0.77 16 13 N -0.89 -47.25 11.63 21.65 0.25 -47.00 16 14 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 15 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 16 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 18 C 0.17 8.41 5.05 85.63 0.43 8.84 16 19 C -0.10 -4.40 5.43 -19.87 -0.11 -4.51 16 20 C -0.11 -4.29 9.60 22.27 0.21 -4.07 16 21 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 22 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 23 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 24 C -0.12 -4.51 9.72 22.27 0.22 -4.29 16 25 C -0.30 -13.90 9.27 22.62 0.21 -13.69 16 26 H 0.07 1.24 7.72 -2.38 -0.02 1.22 16 27 H 0.07 1.23 7.69 -2.39 -0.02 1.22 16 28 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.16 4.37 6.45 -2.91 -0.02 4.35 16 30 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 31 H 0.08 4.33 5.76 -2.39 -0.01 4.32 16 32 H 0.05 2.60 7.38 -2.39 -0.02 2.58 16 33 H 0.11 4.54 7.61 -2.91 -0.02 4.52 16 34 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.12 5.95 6.42 -2.91 -0.02 5.94 16 Total: -1.00 -61.05 340.48 5.22 -55.83 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 1.09 Total: 27.37 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.82 Total: -14.32 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -2.69 Total: -97.78 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.95 Total: -11.78 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -61.05 5.22 -55.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.707 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds