Wall clock time and date at job start Tue Mar 31 2020 12:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35798 * 117.00568 * 2 1 4 4 C 1.39098 * 120.86551 * 359.97438 * 3 2 1 5 5 C 1.38051 * 119.21309 * 180.02562 * 4 3 2 6 6 N 1.32016 * 121.02360 * 0.02651 * 5 4 3 7 7 C 1.31959 * 121.91997 * 359.67311 * 6 5 4 8 8 Cl 1.73600 * 119.66946 * 180.29100 * 7 6 5 9 9 C 1.38986 * 120.66306 * 0.59141 * 7 6 5 10 10 N 1.39491 * 120.54044 * 179.72507 * 9 7 6 11 11 C 1.36790 * 119.99938 * 89.72230 * 10 9 7 12 12 H 1.07997 * 119.99813 * 18.23822 * 11 10 9 13 13 C 1.38769 * 120.00104 * 198.24726 * 11 10 9 14 14 N 1.31620 * 119.99444 * 312.51387 * 13 11 10 15 15 Si 1.86796 * 120.00305 * 132.51123 * 13 11 10 16 16 H 1.48499 * 109.47058 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46977 * 120.00195 * 15 13 11 18 18 H 1.48497 * 109.47268 * 240.00051 * 15 13 11 19 19 C 1.46496 * 119.99786 * 269.72258 * 10 9 7 20 20 C 1.50703 * 109.47182 * 276.83258 * 19 10 9 21 21 C 1.38234 * 119.99779 * 84.55969 * 20 19 10 22 22 C 1.38238 * 120.00081 * 179.73043 * 21 20 19 23 23 C 1.38238 * 119.99560 * 0.26963 * 22 21 20 24 24 C 1.38234 * 120.00424 * 359.96109 * 23 22 21 25 25 C 1.38233 * 120.00037 * 264.77304 * 20 19 10 26 26 H 1.09005 * 109.46755 * 300.00015 * 1 2 3 27 27 H 1.08996 * 109.47491 * 60.00016 * 1 2 3 28 28 H 1.09004 * 109.47653 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.39162 * 0.04431 * 4 3 2 30 30 H 1.07994 * 119.48976 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99673 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46945 * 156.83869 * 19 10 9 33 33 H 1.08998 * 109.47640 * 36.83787 * 19 10 9 34 34 H 1.08003 * 120.00249 * 0.02562 * 21 20 19 35 35 H 1.08001 * 120.00133 * 180.25965 * 22 21 20 36 36 H 1.08000 * 119.99495 * 179.97438 * 23 22 21 37 37 H 1.07989 * 120.00011 * 179.97438 * 24 23 22 38 38 H 1.07995 * 120.00395 * 0.03637 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.3058 2.3879 -0.0005 5 6 1.9679 3.5993 -0.0011 6 7 3.2869 3.6537 -0.0016 7 6 4.0303 2.5635 0.0048 8 17 5.7606 2.7032 0.0113 9 6 3.4418 1.3043 0.0000 10 7 4.2301 0.1535 0.0009 11 6 4.6165 -0.4098 1.1860 12 1 4.0928 -0.1625 2.0976 13 6 5.6816 -1.2988 1.2171 14 7 5.7471 -2.2780 0.3400 15 14 7.0223 -1.1058 2.5033 16 1 6.7173 0.0650 3.3644 17 1 7.0870 -2.3318 3.3387 18 1 8.3288 -0.8967 1.8291 19 6 4.6440 -0.4518 -1.2673 20 6 3.5394 -1.3359 -1.7862 21 6 2.5072 -0.7900 -2.5261 22 6 1.4968 -1.6018 -3.0069 23 6 1.5158 -2.9586 -2.7429 24 6 2.5454 -3.5037 -1.9989 25 6 3.5560 -2.6919 -1.5185 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.2263 2.3551 -0.0002 30 1 1.3980 4.5166 -0.0019 31 1 6.4918 -2.8993 0.3614 32 1 5.5426 -1.0482 -1.1090 33 1 4.8525 0.3335 -1.9938 34 1 2.4926 0.2700 -2.7327 35 1 0.6926 -1.1759 -3.5885 36 1 0.7262 -3.5927 -3.1181 37 1 2.5599 -4.5636 -1.7923 38 1 4.3602 -3.1178 -0.9370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166999558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:29 Heat of formation + Delta-G solvation = 52.147024 kcal Electronic energy + Delta-G solvation = -25301.903202 eV Core-core repulsion = 21750.861811 eV Total energy + Delta-G solvation = -3551.041391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.54942 -39.74161 -39.06342 -37.49812 -37.19876 -33.85147 -32.48756 -31.98807 -31.36414 -30.31945 -28.23254 -27.28764 -25.59060 -23.70388 -23.16240 -22.94926 -21.64544 -19.37875 -18.93207 -18.15504 -17.59070 -17.02913 -16.61781 -16.25440 -16.04638 -15.76476 -15.58978 -15.31514 -15.20016 -14.92771 -14.70183 -14.14037 -13.97523 -13.49475 -13.39985 -13.07165 -13.00710 -12.66331 -12.45013 -12.30424 -12.21039 -12.10831 -12.05097 -11.97305 -11.62278 -11.34132 -10.73742 -10.13794 -9.80328 -9.56531 -9.42615 -9.27687 -8.99746 -8.13185 -5.09420 0.06208 0.41870 0.82826 0.91631 1.04788 1.40904 1.53514 1.61800 2.44060 2.48503 2.78408 2.98580 3.19074 3.57499 3.88511 3.91113 4.19582 4.25672 4.36205 4.37077 4.39207 4.42864 4.46486 4.59837 4.70766 4.79312 4.90243 4.96564 5.12038 5.20190 5.41402 5.46451 5.56286 5.73821 5.78946 5.87488 6.04188 6.17387 6.39741 6.48529 6.60792 6.89480 7.10586 7.85770 8.26920 8.91867 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.008669 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.218694 B = 3229.169103 C = 5056.343201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.298 6.298 3 C 0.153 3.847 4 C -0.253 4.253 5 C 0.135 3.865 6 N -0.525 5.525 7 C 0.173 3.827 8 Cl -0.038 7.038 9 C 0.110 3.890 10 N -0.529 5.529 11 C -0.274 4.274 12 H 0.058 0.942 13 C 0.021 3.979 14 N -0.852 5.852 15 Si 0.886 3.114 16 H -0.284 1.284 17 H -0.296 1.296 18 H -0.288 1.288 19 C 0.175 3.825 20 C -0.079 4.079 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.110 4.110 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.176 0.824 30 H 0.204 0.796 31 H 0.260 0.740 32 H 0.101 0.899 33 H 0.018 0.982 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 4.645 -5.296 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.208 6.208 3 C 0.095 3.905 4 C -0.275 4.275 5 C -0.022 4.022 6 N -0.241 5.241 7 C 0.009 3.991 8 Cl -0.010 7.010 9 C 0.010 3.990 10 N -0.244 5.244 11 C -0.400 4.400 12 H 0.076 0.924 13 C -0.179 4.179 14 N -0.492 5.492 15 Si 0.713 3.287 16 H -0.209 1.209 17 H -0.223 1.223 18 H -0.215 1.215 19 C 0.051 3.949 20 C -0.082 4.082 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.129 4.129 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.193 0.807 30 H 0.220 0.780 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.036 0.964 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.617 5.034 -5.321 13.734 hybrid contribution 0.635 -0.747 1.014 1.411 sum -10.982 4.287 -4.307 12.551 Atomic orbital electron populations 1.23325 0.77131 1.04822 1.02355 1.86372 1.22562 1.25224 1.86615 1.20458 0.92058 0.86105 0.91833 1.22581 1.02979 0.91563 1.10348 1.22980 0.87715 0.98760 0.92716 1.67023 1.08552 1.30824 1.17688 1.22621 0.87223 0.89427 0.99823 1.98353 1.08109 1.98193 1.96341 1.17672 0.88383 0.88430 1.04469 1.41199 1.57600 1.23178 1.02469 1.18655 1.10681 1.25447 0.85245 0.92438 1.24992 0.99317 0.95613 0.97938 1.70154 1.29310 1.10499 1.39264 0.86493 0.83366 0.77543 0.81250 1.20908 1.22331 1.21452 1.20623 0.96981 0.92928 0.84338 1.20614 0.97442 0.94969 0.95142 1.20833 0.95242 0.98112 0.99003 1.21090 0.98640 0.93937 1.01217 1.21202 0.98740 0.95406 0.99728 1.21342 0.95591 0.99724 0.99782 1.21904 0.99588 0.94134 0.97264 0.91441 0.90858 0.88001 0.80717 0.77961 0.92962 0.88152 0.96414 0.88980 0.84829 0.84472 0.86241 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.84 113.37 1.12 1.53 16 2 O -0.30 -10.63 8.23 -91.28 -0.75 -11.38 16 3 C 0.15 5.48 6.27 22.89 0.14 5.63 16 4 C -0.25 -6.70 9.11 22.43 0.20 -6.49 16 5 C 0.14 3.59 11.17 84.62 0.95 4.54 16 6 N -0.52 -18.54 10.33 -186.24 -1.92 -20.47 16 7 C 0.17 7.07 7.30 84.85 0.62 7.69 16 8 Cl -0.04 -1.60 28.60 -2.72 -0.08 -1.68 16 9 C 0.11 4.71 5.08 38.52 0.20 4.90 16 10 N -0.53 -25.27 1.77 -515.07 -0.91 -26.18 16 11 C -0.27 -14.54 9.50 84.05 0.80 -13.74 16 12 H 0.06 3.24 8.06 -2.91 -0.02 3.21 16 13 C 0.02 1.12 4.84 84.85 0.41 1.53 16 14 N -0.85 -44.14 8.11 21.64 0.18 -43.97 16 15 Si 0.89 42.64 29.69 68.60 2.04 44.67 16 16 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 19 C 0.17 8.24 5.31 85.63 0.46 8.69 16 20 C -0.08 -3.41 4.97 -19.87 -0.10 -3.51 16 21 C -0.11 -4.16 7.64 22.27 0.17 -3.99 16 22 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 23 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 24 C -0.15 -5.24 10.05 22.27 0.22 -5.02 16 25 C -0.11 -4.78 9.47 22.27 0.21 -4.57 16 26 H 0.07 1.29 7.71 -2.38 -0.02 1.27 16 27 H 0.07 1.33 7.71 -2.39 -0.02 1.31 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.18 3.08 6.46 -2.91 -0.02 3.06 16 30 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.26 13.00 8.31 -92.70 -0.77 12.23 16 32 H 0.10 5.23 4.90 -2.39 -0.01 5.21 16 33 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.09 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.12 3.79 8.06 -2.92 -0.02 3.77 16 38 H 0.14 6.66 5.30 -2.91 -0.02 6.64 16 Total: -1.00 -62.15 333.65 5.48 -56.67 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.09 Total: 12.68 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.84 Total: -10.36 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.66 Total: -90.62 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.75 Total: -11.38 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.04 Total: 44.67 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -62.15 5.48 -56.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166999558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.822 kcal (2) G-P(sol) polarization free energy of solvation -62.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds