Wall clock time and date at job start Tue Mar 31 2020 12:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48498 * 109.47082 * 174.65966 * 3 2 1 5 5 H 1.48496 * 109.46945 * 294.65971 * 3 2 1 6 6 H 1.48503 * 109.46796 * 54.66045 * 3 2 1 7 7 C 1.37878 * 119.99971 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.84899 * 348.87838 * 7 2 1 9 9 C 1.53227 * 108.53653 * 231.32291 * 8 7 2 10 10 C 1.52962 * 109.40730 * 305.37579 * 9 8 7 11 11 H 1.08997 * 109.35611 * 303.52795 * 10 9 8 12 12 N 1.46500 * 109.41380 * 183.70294 * 10 9 8 13 13 C 1.37840 * 120.00273 * 84.64683 * 12 10 9 14 14 N 1.32681 * 121.00271 * 0.06880 * 13 12 10 15 15 C 1.32360 * 121.49121 * 180.02562 * 14 13 12 16 16 N 1.31252 * 123.08259 * 359.93653 * 15 14 13 17 17 C 1.33864 * 120.35448 * 0.02562 * 16 15 14 18 18 C 1.40408 * 122.80053 * 180.02562 * 17 16 15 19 19 Cl 1.73608 * 120.10791 * 359.95872 * 18 17 16 20 20 N 1.31430 * 119.78854 * 179.68462 * 18 17 16 21 21 C 1.32454 * 122.78908 * 0.56971 * 20 18 17 22 22 C 1.36511 * 121.79580 * 359.44336 * 21 20 18 23 23 C 1.40035 * 118.57386 * 0.25286 * 22 21 20 24 24 C 1.52964 * 109.81507 * 63.59706 * 10 9 8 25 25 C 1.51265 * 120.84733 * 168.85897 * 7 2 1 26 26 H 0.96996 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.62772 * 351.04173 * 8 7 2 28 28 H 1.08999 * 109.62483 * 111.42322 * 8 7 2 29 29 H 1.08999 * 109.48218 * 185.39551 * 9 8 7 30 30 H 1.09001 * 109.47933 * 65.35499 * 9 8 7 31 31 H 0.97001 * 120.00094 * 264.65190 * 12 10 9 32 32 H 1.07994 * 118.45799 * 179.97438 * 15 14 13 33 33 H 1.07997 * 119.09878 * 179.71862 * 21 20 18 34 34 H 1.07999 * 120.71122 * 180.22916 * 22 21 20 35 35 H 1.08998 * 109.47935 * 56.38360 * 24 10 9 36 36 H 1.08999 * 109.48196 * 176.40618 * 24 10 9 37 37 H 1.09004 * 109.62753 * 8.95809 * 25 7 2 38 38 H 1.09002 * 109.78440 * 248.48325 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7039 1.3495 0.1303 5 1 1.9908 2.3385 -1.2724 6 1 1.7953 2.4513 1.1421 7 6 2.0046 -1.1941 -0.0005 8 6 1.2889 -2.5030 0.2494 9 6 2.0331 -3.2623 1.3528 10 6 3.5045 -3.4129 0.9625 11 1 3.5726 -3.9119 -0.0041 12 7 4.1970 -4.2146 1.9743 13 6 4.1662 -5.5908 1.9029 14 7 3.5166 -6.2100 0.9258 15 6 3.4803 -7.5309 0.8481 16 7 4.0746 -8.3161 1.7158 17 6 4.7591 -7.7953 2.7416 18 6 5.4144 -8.5866 3.6986 19 17 5.3581 -10.3179 3.5834 20 7 6.0752 -8.0123 4.6789 21 6 6.1483 -6.6974 4.8211 22 6 5.5447 -5.8444 3.9427 23 6 4.8271 -6.3858 2.8690 24 6 4.1601 -2.0340 0.8701 25 6 3.4959 -1.2286 -0.2515 26 1 -0.4850 0.8400 0.0004 27 1 0.2651 -2.3057 0.5673 28 1 1.2804 -3.0960 -0.6651 29 1 1.5877 -4.2490 1.4791 30 1 1.9601 -2.7077 2.2883 31 1 4.6773 -3.7770 2.6946 32 1 2.9366 -7.9837 0.0323 33 1 6.7042 -6.2891 5.6521 34 1 5.6187 -4.7749 4.0734 35 1 4.0368 -1.5086 1.8171 36 1 5.2223 -2.1502 0.6546 37 1 3.8901 -0.2123 -0.2554 38 1 3.6975 -1.7031 -1.2118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167842697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:38 Heat of formation + Delta-G solvation = 63.610150 kcal Electronic energy + Delta-G solvation = -23649.626472 eV Core-core repulsion = 20131.374911 eV Total energy + Delta-G solvation = -3518.251561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70570 -38.97530 -37.87286 -36.76976 -35.37316 -32.92343 -32.77911 -31.43714 -30.20075 -29.79421 -27.42505 -25.17778 -24.96700 -22.69960 -22.05623 -21.48862 -19.86158 -19.36405 -18.33263 -17.78349 -16.56720 -16.20195 -15.65949 -15.51348 -15.00067 -14.59156 -14.49132 -14.20159 -14.01321 -13.42977 -13.36482 -13.09900 -12.53275 -12.37813 -12.07983 -11.78335 -11.64841 -11.37363 -11.14690 -10.96598 -10.90222 -10.77248 -10.38272 -10.26390 -10.21689 -10.06798 -9.51290 -9.44692 -9.19473 -9.02198 -8.73402 -8.50675 -7.82920 -6.21699 -4.11923 -0.01147 0.44766 1.60096 1.63412 2.85844 2.91257 3.17413 3.24921 3.28245 3.87631 3.91385 3.98385 4.22200 4.27742 4.37149 4.42208 4.79017 4.95864 5.05737 5.22432 5.42562 5.43283 5.66038 5.88106 5.96119 6.09327 6.29030 6.39745 6.50582 6.60611 6.62971 6.78644 6.91511 6.95560 7.19696 7.26548 7.32463 7.44871 7.54353 7.67649 7.73969 8.23344 8.27284 8.85547 9.43230 10.87577 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.030293 B = 0.002959 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.090202 B = 9459.017836 C = 9997.764304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.493 4.493 8 C 0.016 3.984 9 C -0.113 4.113 10 C 0.155 3.845 11 H 0.090 0.910 12 N -0.674 5.674 13 C 0.484 3.516 14 N -0.579 5.579 15 C 0.363 3.637 16 N -0.549 5.549 17 C 0.157 3.843 18 C 0.201 3.799 19 Cl -0.005 7.005 20 N -0.448 5.448 21 C 0.065 3.935 22 C -0.103 4.103 23 C -0.171 4.171 24 C -0.116 4.116 25 C -0.019 4.019 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.009 0.991 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.406 0.594 32 H 0.200 0.800 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -11.623 7.116 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.706 3.294 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.512 4.512 8 C -0.022 4.022 9 C -0.152 4.152 10 C 0.053 3.947 11 H 0.108 0.892 12 N -0.300 5.300 13 C 0.226 3.774 14 N -0.307 5.307 15 C 0.073 3.927 16 N -0.270 5.270 17 C 0.026 3.974 18 C 0.022 3.978 19 Cl 0.024 6.976 20 N -0.160 5.160 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.186 4.186 24 C -0.155 4.155 25 C -0.057 4.057 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.243 0.757 32 H 0.216 0.784 33 H 0.185 0.815 34 H 0.162 0.838 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 10.717 -12.429 6.902 17.804 hybrid contribution 0.571 1.893 0.487 2.037 sum 11.288 -10.535 7.389 17.117 Atomic orbital electron populations 1.69899 1.06265 1.26990 1.48771 1.24858 0.94619 0.98597 0.94458 0.86765 0.80926 0.83770 0.77931 1.18158 1.20835 1.21206 1.20008 0.90825 0.92056 1.48324 1.19298 0.97202 0.93262 0.92448 1.21993 0.93360 0.98681 1.01136 1.21365 0.92713 0.90472 0.90174 0.89201 1.45407 1.53002 1.01042 1.30594 1.18628 0.85571 0.86303 0.86939 1.68186 1.25219 1.12250 1.25046 1.24806 0.89320 0.84428 0.94122 1.68812 1.14318 1.38806 1.05045 1.19022 0.95011 0.89300 0.94047 1.21504 0.96467 0.87963 0.91835 1.98407 1.96616 1.05459 1.97110 1.66760 1.15101 1.13965 1.20197 1.22028 0.99813 0.86537 0.99735 1.21757 0.95657 1.01667 0.93446 1.19084 1.05123 0.94795 0.99601 1.21929 0.97007 0.94478 1.02048 1.19892 0.96089 0.96417 0.93338 0.92542 0.92656 0.97285 0.94396 0.93407 0.75693 0.78396 0.81524 0.83827 0.92536 0.94347 0.93667 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.37 12.82 55.43 0.71 -23.66 16 2 C 0.08 2.02 5.44 -17.82 -0.10 1.92 16 3 Si 0.88 19.50 27.95 -169.99 -4.75 14.75 16 4 H -0.26 -5.34 5.58 56.52 0.32 -5.03 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -12.06 5.48 -98.93 -0.54 -12.61 16 8 C 0.02 0.37 5.93 -27.49 -0.16 0.21 16 9 C -0.11 -2.20 5.51 -26.63 -0.15 -2.35 16 10 C 0.15 2.61 2.38 -67.97 -0.16 2.45 16 11 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 12 N -0.67 -9.13 5.15 -53.56 -0.28 -9.40 16 13 C 0.48 6.87 7.53 -155.00 -1.17 5.71 16 14 N -0.58 -8.77 9.34 -13.55 -0.13 -8.90 16 15 C 0.36 4.85 12.21 -92.13 -1.13 3.72 16 16 N -0.55 -7.77 10.03 -12.61 -0.13 -7.90 16 17 C 0.16 2.22 6.62 -84.85 -0.56 1.66 16 18 C 0.20 2.72 7.36 -16.91 -0.12 2.60 16 19 Cl 0.00 -0.06 28.79 -51.86 -1.49 -1.55 16 20 N -0.45 -5.61 10.28 -10.25 -0.11 -5.72 16 21 C 0.07 0.64 11.08 -17.91 -0.20 0.44 16 22 C -0.10 -1.03 9.61 -39.53 -0.38 -1.41 16 23 C -0.17 -2.23 5.76 -106.66 -0.61 -2.85 16 24 C -0.12 -2.00 5.40 -26.63 -0.14 -2.15 16 25 C -0.02 -0.41 5.65 -27.49 -0.16 -0.56 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.05 1.45 7.19 -51.93 -0.37 1.07 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.41 4.35 6.98 -40.82 -0.29 4.07 16 32 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 0.99 6.73 -52.49 -0.35 0.64 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.95 4.36 -51.93 -0.23 0.72 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -28.72 326.25 -11.07 -39.79 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.24 Total: 0.87 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -5.58 Total: -3.21 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.08 Total: -55.58 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.75 Total: 14.75 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.49 Total: -1.55 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.72 -11.07 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.400 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds