Wall clock time and date at job start Tue Mar 31 2020 12:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48498 * 109.47082 * 174.65966 * 3 2 1 5 5 H 1.48496 * 109.46945 * 294.65971 * 3 2 1 6 6 H 1.48503 * 109.46796 * 54.66045 * 3 2 1 7 7 C 1.37878 * 119.99971 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.84899 * 348.87838 * 7 2 1 9 9 C 1.53227 * 108.53653 * 231.32291 * 8 7 2 10 10 C 1.52962 * 109.40730 * 305.37579 * 9 8 7 11 11 H 1.08997 * 109.35611 * 303.52795 * 10 9 8 12 12 N 1.46500 * 109.41380 * 183.70294 * 10 9 8 13 13 C 1.37840 * 120.00273 * 84.64683 * 12 10 9 14 14 N 1.32681 * 121.00271 * 0.06880 * 13 12 10 15 15 C 1.32360 * 121.49121 * 180.02562 * 14 13 12 16 16 N 1.31252 * 123.08259 * 359.93653 * 15 14 13 17 17 C 1.33864 * 120.35448 * 0.02562 * 16 15 14 18 18 C 1.40408 * 122.80053 * 180.02562 * 17 16 15 19 19 Cl 1.73608 * 120.10791 * 359.95872 * 18 17 16 20 20 N 1.31430 * 119.78854 * 179.68462 * 18 17 16 21 21 C 1.32454 * 122.78908 * 0.56971 * 20 18 17 22 22 C 1.36511 * 121.79580 * 359.44336 * 21 20 18 23 23 C 1.40035 * 118.57386 * 0.25286 * 22 21 20 24 24 C 1.52964 * 109.81507 * 63.59706 * 10 9 8 25 25 C 1.51265 * 120.84733 * 168.85897 * 7 2 1 26 26 H 0.96996 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.62772 * 351.04173 * 8 7 2 28 28 H 1.08999 * 109.62483 * 111.42322 * 8 7 2 29 29 H 1.08999 * 109.48218 * 185.39551 * 9 8 7 30 30 H 1.09001 * 109.47933 * 65.35499 * 9 8 7 31 31 H 0.97001 * 120.00094 * 264.65190 * 12 10 9 32 32 H 1.07994 * 118.45799 * 179.97438 * 15 14 13 33 33 H 1.07997 * 119.09878 * 179.71862 * 21 20 18 34 34 H 1.07999 * 120.71122 * 180.22916 * 22 21 20 35 35 H 1.08998 * 109.47935 * 56.38360 * 24 10 9 36 36 H 1.08999 * 109.48196 * 176.40618 * 24 10 9 37 37 H 1.09004 * 109.62753 * 8.95809 * 25 7 2 38 38 H 1.09002 * 109.78440 * 248.48325 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7039 1.3495 0.1303 5 1 1.9908 2.3385 -1.2724 6 1 1.7953 2.4513 1.1421 7 6 2.0046 -1.1941 -0.0005 8 6 1.2889 -2.5030 0.2494 9 6 2.0331 -3.2623 1.3528 10 6 3.5045 -3.4129 0.9625 11 1 3.5726 -3.9119 -0.0041 12 7 4.1970 -4.2146 1.9743 13 6 4.1662 -5.5908 1.9029 14 7 3.5166 -6.2100 0.9258 15 6 3.4803 -7.5309 0.8481 16 7 4.0746 -8.3161 1.7158 17 6 4.7591 -7.7953 2.7416 18 6 5.4144 -8.5866 3.6986 19 17 5.3581 -10.3179 3.5834 20 7 6.0752 -8.0123 4.6789 21 6 6.1483 -6.6974 4.8211 22 6 5.5447 -5.8444 3.9427 23 6 4.8271 -6.3858 2.8690 24 6 4.1601 -2.0340 0.8701 25 6 3.4959 -1.2286 -0.2515 26 1 -0.4850 0.8400 0.0004 27 1 0.2651 -2.3057 0.5673 28 1 1.2804 -3.0960 -0.6651 29 1 1.5877 -4.2490 1.4791 30 1 1.9601 -2.7077 2.2883 31 1 4.6773 -3.7770 2.6946 32 1 2.9366 -7.9837 0.0323 33 1 6.7042 -6.2891 5.6521 34 1 5.6187 -4.7749 4.0734 35 1 4.0368 -1.5086 1.8171 36 1 5.2223 -2.1502 0.6546 37 1 3.8901 -0.2123 -0.2554 38 1 3.6975 -1.7031 -1.2118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:37 Heat of formation + Delta-G solvation = 47.616855 kcal Electronic energy + Delta-G solvation = -23650.319993 eV Core-core repulsion = 20131.374911 eV Total energy + Delta-G solvation = -3518.945083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67933 -40.00638 -39.15492 -37.71416 -36.72139 -34.37535 -33.83150 -32.75831 -31.45399 -31.22541 -28.96451 -26.21089 -25.95750 -24.00578 -23.57396 -22.92324 -21.36131 -20.35727 -19.40294 -18.78000 -18.04413 -17.41795 -16.75930 -16.59427 -16.37410 -15.90475 -15.58128 -15.19126 -15.14114 -14.93745 -14.57528 -14.26732 -14.13888 -14.03192 -13.39764 -13.26118 -12.84113 -12.76840 -12.59640 -12.30992 -12.27479 -12.01255 -11.86183 -11.69480 -11.24750 -11.20822 -11.14091 -10.90887 -10.67187 -10.45774 -10.18808 -10.13867 -8.88663 -8.15349 -6.08987 -0.95082 -0.50520 0.64190 0.67905 1.42123 1.46015 1.54366 1.82454 1.96335 2.44144 2.92128 2.93188 3.03493 3.12229 3.30053 3.47078 3.59211 3.90453 4.02144 4.09095 4.21979 4.38422 4.51960 4.63583 4.73132 4.89635 4.98805 5.00623 5.06809 5.18595 5.24029 5.31465 5.36226 5.58825 5.61617 5.68878 5.80064 5.84189 5.94183 6.35012 6.42885 6.55306 6.97680 7.22384 7.49070 8.95806 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.030293 B = 0.002959 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.090202 B = 9459.017836 C = 9997.764304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.226 1.226 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.499 4.499 8 C 0.013 3.987 9 C -0.098 4.098 10 C 0.173 3.827 11 H 0.075 0.925 12 N -0.665 5.665 13 C 0.478 3.522 14 N -0.606 5.606 15 C 0.356 3.644 16 N -0.559 5.559 17 C 0.133 3.867 18 C 0.182 3.818 19 Cl -0.007 7.007 20 N -0.458 5.458 21 C 0.071 3.929 22 C -0.091 4.091 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.023 4.023 26 H 0.261 0.739 27 H 0.017 0.983 28 H -0.006 1.006 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.423 0.577 32 H 0.223 0.777 33 H 0.208 0.792 34 H 0.182 0.818 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.137 -11.077 8.683 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.149 1.149 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.518 4.518 8 C -0.025 4.025 9 C -0.138 4.138 10 C 0.069 3.931 11 H 0.093 0.907 12 N -0.294 5.294 13 C 0.220 3.780 14 N -0.335 5.335 15 C 0.067 3.933 16 N -0.280 5.280 17 C 0.003 3.997 18 C 0.004 3.996 19 Cl 0.022 6.978 20 N -0.170 5.170 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.190 4.190 24 C -0.147 4.147 25 C -0.061 4.061 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.013 0.987 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.239 0.761 33 H 0.225 0.775 34 H 0.199 0.801 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 13.892 -11.938 8.492 20.189 hybrid contribution -0.413 1.618 0.026 1.670 sum 13.479 -10.320 8.518 18.993 Atomic orbital electron populations 1.70060 1.08135 1.27453 1.51586 1.25704 0.95205 1.02193 0.94834 0.85855 0.81383 0.79492 0.77128 1.14935 1.21604 1.21756 1.20637 0.93012 0.91871 1.46297 1.19232 0.96001 0.94010 0.93229 1.21744 0.95264 0.97602 0.99160 1.20850 0.90942 0.90959 0.90337 0.90718 1.44941 1.53267 1.00573 1.30613 1.18735 0.85650 0.86425 0.87154 1.68184 1.26127 1.13138 1.26003 1.25255 0.89381 0.84060 0.94642 1.68817 1.14561 1.39227 1.05393 1.19252 0.95762 0.90207 0.94457 1.21563 0.97466 0.88123 0.92437 1.98397 1.96692 1.05567 1.97173 1.66833 1.14873 1.15486 1.19820 1.22769 0.98952 0.85508 1.00358 1.22189 0.93770 1.03649 0.91727 1.19200 1.05411 0.94186 1.00230 1.21780 0.98444 0.93602 1.00835 1.19898 0.93808 0.97556 0.94871 0.92977 0.96458 0.98729 0.94694 0.93653 0.73683 0.76131 0.77495 0.80076 0.91607 0.90964 0.93184 0.96164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 12.82 21.45 0.28 -53.21 16 2 C 0.02 0.98 5.44 84.65 0.46 1.44 16 3 Si 0.94 39.68 27.95 68.60 1.92 41.59 16 4 H -0.23 -8.38 5.58 99.48 0.56 -7.82 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.50 -24.40 5.48 -16.17 -0.09 -24.49 16 8 C 0.01 0.65 5.93 30.10 0.18 0.83 16 9 C -0.10 -3.81 5.51 30.66 0.17 -3.64 16 10 C 0.17 5.45 2.38 44.97 0.11 5.56 16 11 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 12 N -0.66 -15.87 5.15 -323.35 -1.66 -17.53 16 13 C 0.48 12.57 7.53 133.96 1.01 13.58 16 14 N -0.61 -17.80 9.34 -196.79 -1.84 -19.63 16 15 C 0.36 9.33 12.21 180.88 2.21 11.54 16 16 N -0.56 -15.54 10.03 -193.81 -1.94 -17.48 16 17 C 0.13 3.60 6.62 40.21 0.27 3.86 16 18 C 0.18 4.67 7.36 85.28 0.63 5.30 16 19 Cl -0.01 -0.17 28.79 -2.72 -0.08 -0.25 16 20 N -0.46 -10.33 10.28 -186.34 -1.92 -12.24 16 21 C 0.07 1.11 11.08 84.20 0.93 2.04 16 22 C -0.09 -1.44 9.61 22.30 0.21 -1.22 16 23 C -0.18 -4.15 5.76 -21.19 -0.12 -4.27 16 24 C -0.11 -3.33 5.40 30.66 0.17 -3.17 16 25 C -0.02 -0.93 5.65 30.10 0.17 -0.76 16 26 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.02 0.93 7.19 -2.39 -0.02 0.92 16 28 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.42 7.09 6.98 -92.71 -0.65 6.44 16 32 H 0.22 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.18 1.42 6.73 -2.91 -0.02 1.40 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.93 4.36 -2.38 -0.01 1.92 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -65.16 326.25 1.37 -63.79 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.32 Total: 8.37 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 6.30 Total: 6.60 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -7.09 Total: -120.11 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.92 Total: 41.59 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -65.16 1.37 -63.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.407 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds