Wall clock time and date at job start Tue Mar 31 2020 12:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35756 * 119.62570 * 2 1 4 4 C 1.35352 * 120.70303 * 179.73769 * 3 2 1 5 5 C 1.40199 * 119.94585 * 0.52057 * 4 3 2 6 6 C 1.50702 * 120.37034 * 179.73807 * 5 4 3 7 7 N 1.46499 * 109.47050 * 274.72754 * 6 5 4 8 8 C 1.38751 * 120.00201 * 179.97438 * 7 6 5 9 9 C 1.38681 * 120.28054 * 0.23789 * 8 7 6 10 10 C 1.38323 * 120.01122 * 180.29564 * 9 8 7 11 11 Cl 1.73598 * 119.70362 * 179.73731 * 10 9 8 12 12 C 1.39057 * 120.59390 * 359.71851 * 10 9 8 13 13 C 1.36407 * 120.57796 * 0.02562 * 12 10 9 14 14 C 1.40752 * 119.96478 * 359.97331 * 13 12 10 15 15 C 1.41019 * 120.29249 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00002 * 209.24162 * 15 14 13 17 17 C 1.39911 * 119.99904 * 29.24500 * 15 14 13 18 18 N 1.30893 * 120.00255 * 197.29616 * 17 15 14 19 19 Si 1.86801 * 119.99924 * 17.28868 * 17 15 14 20 20 H 1.48494 * 109.47402 * 270.00443 * 19 17 15 21 21 H 1.48496 * 109.47218 * 30.00354 * 19 17 15 22 22 H 1.48501 * 109.46922 * 150.00292 * 19 17 15 23 23 C 1.36398 * 119.26549 * 359.46405 * 5 4 3 24 24 C 1.34662 * 119.62068 * 179.97438 * 2 1 3 25 25 O 1.22060 * 119.99107 * 359.97438 * 24 2 1 26 26 H 1.09003 * 109.47060 * 270.02106 * 1 2 3 27 27 H 1.08999 * 109.46929 * 30.01623 * 1 2 3 28 28 H 1.08998 * 109.47406 * 150.01955 * 1 2 3 29 29 H 1.07999 * 119.64991 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.03291 * 180.26492 * 4 3 2 31 31 H 1.08993 * 109.47149 * 154.72519 * 6 5 4 32 32 H 1.09003 * 109.46709 * 34.72679 * 6 5 4 33 33 H 0.97000 * 120.00157 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.99365 * 359.97438 * 9 8 7 35 35 H 1.07994 * 119.70973 * 179.97438 * 12 10 9 36 36 H 1.07999 * 120.01833 * 179.97438 * 13 12 10 37 37 H 0.97004 * 119.99155 * 355.40285 * 18 17 15 38 38 H 1.08001 * 120.35570 * 180.25079 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1801 0.0000 4 6 3.4893 1.2055 0.0053 5 6 4.2119 0.0041 -0.0001 6 6 5.7189 0.0213 -0.0002 7 7 6.2057 0.1469 -1.3762 8 6 7.5695 0.1850 -1.6289 9 6 8.4769 0.0998 -0.5837 10 6 9.8352 0.1446 -0.8414 11 17 10.9640 0.0441 0.4737 12 6 10.3046 0.2689 -2.1444 13 6 9.4336 0.3495 -3.1911 14 6 8.0465 0.3063 -2.9562 15 6 7.1398 0.3885 -4.0332 16 1 6.1605 0.8181 -3.8830 17 6 7.5090 -0.0868 -5.2962 18 7 6.8348 0.2803 -6.3564 19 14 8.9644 -1.2449 -5.4697 20 1 10.2039 -0.4544 -5.6788 21 1 9.0990 -2.0591 -4.2351 22 1 8.7472 -2.1420 -6.6330 23 6 3.5360 -1.1806 0.0004 24 6 2.1306 -1.1706 0.0005 25 8 1.5131 -2.2235 0.0015 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.5843 2.1085 0.0004 30 1 4.0122 2.1505 0.0096 31 1 6.0928 -0.9056 0.4344 32 1 6.0725 0.8675 0.5890 33 1 5.5746 0.2034 -2.1107 34 1 8.1230 0.0037 0.4321 35 1 11.3681 0.3029 -2.3292 36 1 9.8081 0.4463 -4.1994 37 1 6.0397 0.8275 -6.2600 38 1 4.0749 -2.1165 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168404146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:31 Heat of formation + Delta-G solvation = 9.680258 kcal Electronic energy + Delta-G solvation = -23220.856824 eV Core-core repulsion = 19667.973936 eV Total energy + Delta-G solvation = -3552.882888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41342 -38.55108 -37.18113 -36.08132 -35.48774 -33.81617 -33.53095 -30.35047 -30.13063 -29.28549 -27.60113 -25.56472 -24.50896 -23.80547 -22.10629 -20.77610 -20.28921 -18.24461 -17.62720 -17.52958 -16.84899 -16.19930 -16.08044 -15.42198 -14.59294 -14.45282 -14.34233 -13.91092 -13.61407 -13.51987 -13.32372 -13.29207 -12.93364 -12.78081 -12.47173 -12.23100 -12.01146 -11.85459 -11.79807 -11.08358 -10.84944 -10.80633 -10.42986 -10.17186 -10.10279 -10.00713 -9.86120 -9.48645 -9.11119 -9.02186 -8.09964 -7.74933 -7.34588 -6.70205 -4.46479 0.65336 1.72318 2.42480 2.48940 2.66115 3.18674 3.24991 3.34263 3.46887 3.54086 3.99495 4.30981 4.36251 4.44516 4.47853 4.63867 4.90807 4.95014 5.14038 5.15319 5.27328 5.33374 5.62026 5.72624 5.79200 5.90945 5.95293 6.10639 6.31270 6.41171 6.46921 6.66409 6.79329 6.90245 7.05307 7.28577 7.48264 7.56109 7.70120 7.90794 7.94681 8.31021 8.36602 8.62765 8.70438 9.97669 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004044 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.455992 B = 6922.033896 C = 8703.081134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.501 5.501 3 C 0.123 3.877 4 C -0.210 4.210 5 C 0.005 3.995 6 C 0.165 3.835 7 N -0.738 5.738 8 C 0.133 3.867 9 C -0.157 4.157 10 C -0.110 4.110 11 Cl -0.127 7.127 12 C -0.099 4.099 13 C -0.220 4.220 14 C 0.064 3.936 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.044 3.956 18 N -0.818 5.818 19 Si 1.072 2.928 20 H -0.276 1.276 21 H -0.262 1.262 22 H -0.291 1.291 23 C -0.223 4.223 24 C 0.513 3.487 25 O -0.556 6.556 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.284 0.716 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 3.692 10.719 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.213 5.213 3 C -0.004 4.004 4 C -0.234 4.234 5 C 0.001 3.999 6 C 0.040 3.960 7 N -0.373 5.373 8 C 0.032 3.968 9 C -0.182 4.182 10 C -0.137 4.137 11 Cl -0.099 7.099 12 C -0.120 4.120 13 C -0.240 4.240 14 C 0.058 3.942 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.175 4.175 18 N -0.440 5.440 19 Si 0.899 3.101 20 H -0.203 1.203 21 H -0.186 1.186 22 H -0.219 1.219 23 C -0.246 4.246 24 C 0.316 3.684 25 O -0.439 6.439 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.180 0.820 30 H 0.165 0.835 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.707 2.224 9.838 12.693 hybrid contribution -1.176 1.156 0.946 1.901 sum -8.883 3.380 10.784 14.374 Atomic orbital electron populations 1.22131 0.77433 1.04936 1.03683 1.45389 1.09152 1.06933 1.59811 1.21884 0.93694 0.89288 0.95486 1.20649 0.92305 0.99348 1.11053 1.20327 0.96499 0.92757 0.90309 1.20114 0.87408 1.01724 0.86742 1.43830 1.04021 1.84388 1.05047 1.17608 0.82721 1.03291 0.93133 1.19876 0.90865 1.10523 0.96915 1.19850 0.88549 1.18550 0.86767 1.98233 1.63266 1.97680 1.50706 1.20065 0.98401 1.02668 0.90846 1.20535 0.92739 1.13065 0.97683 1.17470 0.92494 0.93395 0.90808 1.20294 1.01850 1.37018 0.94842 0.90778 1.27214 1.02729 0.96550 0.91052 1.70585 1.14674 1.27185 1.31600 0.83575 0.73701 0.76039 0.76782 1.20316 1.18599 1.21890 1.22132 0.92379 0.99851 1.10207 1.17121 0.89220 0.82701 0.79395 1.90948 1.69909 1.29587 1.53483 0.90740 0.89754 0.88845 0.82022 0.83467 0.91789 0.91656 0.76266 0.87720 0.88018 0.86902 0.90432 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.36 59.85 0.62 1.07 16 2 N -0.50 -5.38 2.99 -127.20 -0.38 -5.76 16 3 C 0.12 1.05 10.28 -16.84 -0.17 0.87 16 4 C -0.21 -2.15 9.73 -39.87 -0.39 -2.54 16 5 C 0.01 0.07 5.26 -104.55 -0.55 -0.48 16 6 C 0.17 2.34 5.06 -5.19 -0.03 2.31 16 7 N -0.74 -13.34 5.62 -59.38 -0.33 -13.67 16 8 C 0.13 2.81 6.68 -83.30 -0.56 2.25 16 9 C -0.16 -3.16 9.07 -39.39 -0.36 -3.52 16 10 C -0.11 -2.25 6.33 -39.25 -0.25 -2.49 16 11 Cl -0.13 -2.26 28.94 -51.86 -1.50 -3.76 16 12 C -0.10 -2.11 9.74 -39.94 -0.39 -2.50 16 13 C -0.22 -5.04 7.20 -39.29 -0.28 -5.33 16 14 C 0.06 1.50 5.14 -106.63 -0.55 0.95 16 15 C -0.51 -12.64 8.81 -37.90 -0.33 -12.97 16 16 H 0.07 1.85 6.98 -52.49 -0.37 1.49 16 17 C 0.04 1.09 5.42 -17.33 -0.09 1.00 16 18 N -0.82 -21.17 13.66 55.55 0.76 -20.41 16 19 Si 1.07 23.76 24.90 -169.99 -4.23 19.52 16 20 H -0.28 -5.81 6.44 56.52 0.36 -5.44 16 21 H -0.26 -5.81 7.02 56.52 0.40 -5.42 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 23 C -0.22 -3.15 9.63 -39.38 -0.38 -3.53 16 24 C 0.51 7.53 7.41 -15.44 -0.11 7.42 16 25 O -0.56 -10.00 16.64 4.86 0.08 -9.92 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.37 8.01 -51.93 -0.42 -0.05 16 28 H 0.09 0.85 7.39 -51.93 -0.38 0.46 16 29 H 0.16 0.70 8.04 -52.49 -0.42 0.28 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 33 H 0.40 7.55 6.75 -40.82 -0.28 7.28 16 34 H 0.10 1.89 6.73 -52.49 -0.35 1.53 16 35 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.11 2.58 4.42 -52.49 -0.23 2.35 16 37 H 0.28 7.14 8.73 -40.82 -0.36 6.79 16 38 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -29.49 334.58 -8.54 -38.03 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.15 Total: 8.42 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.82 Total: -17.49 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.05 Total: -39.84 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.23 Total: 19.52 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.50 Total: -3.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.49 -8.54 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168404146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds