Wall clock time and date at job start Tue Mar 31 2020 12:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35756 * 119.62570 * 2 1 4 4 C 1.35352 * 120.70303 * 179.73769 * 3 2 1 5 5 C 1.40199 * 119.94585 * 0.52057 * 4 3 2 6 6 C 1.50702 * 120.37034 * 179.73807 * 5 4 3 7 7 N 1.46499 * 109.47050 * 274.72754 * 6 5 4 8 8 C 1.38751 * 120.00201 * 179.97438 * 7 6 5 9 9 C 1.38681 * 120.28054 * 0.23789 * 8 7 6 10 10 C 1.38323 * 120.01122 * 180.29564 * 9 8 7 11 11 Cl 1.73598 * 119.70362 * 179.73731 * 10 9 8 12 12 C 1.39057 * 120.59390 * 359.71851 * 10 9 8 13 13 C 1.36407 * 120.57796 * 0.02562 * 12 10 9 14 14 C 1.40752 * 119.96478 * 359.97331 * 13 12 10 15 15 C 1.41019 * 120.29249 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00002 * 209.24162 * 15 14 13 17 17 C 1.39911 * 119.99904 * 29.24500 * 15 14 13 18 18 N 1.30893 * 120.00255 * 197.29616 * 17 15 14 19 19 Si 1.86801 * 119.99924 * 17.28868 * 17 15 14 20 20 H 1.48494 * 109.47402 * 270.00443 * 19 17 15 21 21 H 1.48496 * 109.47218 * 30.00354 * 19 17 15 22 22 H 1.48501 * 109.46922 * 150.00292 * 19 17 15 23 23 C 1.36398 * 119.26549 * 359.46405 * 5 4 3 24 24 C 1.34662 * 119.62068 * 179.97438 * 2 1 3 25 25 O 1.22060 * 119.99107 * 359.97438 * 24 2 1 26 26 H 1.09003 * 109.47060 * 270.02106 * 1 2 3 27 27 H 1.08999 * 109.46929 * 30.01623 * 1 2 3 28 28 H 1.08998 * 109.47406 * 150.01955 * 1 2 3 29 29 H 1.07999 * 119.64991 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.03291 * 180.26492 * 4 3 2 31 31 H 1.08993 * 109.47149 * 154.72519 * 6 5 4 32 32 H 1.09003 * 109.46709 * 34.72679 * 6 5 4 33 33 H 0.97000 * 120.00157 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.99365 * 359.97438 * 9 8 7 35 35 H 1.07994 * 119.70973 * 179.97438 * 12 10 9 36 36 H 1.07999 * 120.01833 * 179.97438 * 13 12 10 37 37 H 0.97004 * 119.99155 * 355.40285 * 18 17 15 38 38 H 1.08001 * 120.35570 * 180.25079 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1801 0.0000 4 6 3.4893 1.2055 0.0053 5 6 4.2119 0.0041 -0.0001 6 6 5.7189 0.0213 -0.0002 7 7 6.2057 0.1469 -1.3762 8 6 7.5695 0.1850 -1.6289 9 6 8.4769 0.0998 -0.5837 10 6 9.8352 0.1446 -0.8414 11 17 10.9640 0.0441 0.4737 12 6 10.3046 0.2689 -2.1444 13 6 9.4336 0.3495 -3.1911 14 6 8.0465 0.3063 -2.9562 15 6 7.1398 0.3885 -4.0332 16 1 6.1605 0.8181 -3.8830 17 6 7.5090 -0.0868 -5.2962 18 7 6.8348 0.2803 -6.3564 19 14 8.9644 -1.2449 -5.4697 20 1 10.2039 -0.4544 -5.6788 21 1 9.0990 -2.0591 -4.2351 22 1 8.7472 -2.1420 -6.6330 23 6 3.5360 -1.1806 0.0004 24 6 2.1306 -1.1706 0.0005 25 8 1.5131 -2.2235 0.0015 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.5843 2.1085 0.0004 30 1 4.0122 2.1505 0.0096 31 1 6.0928 -0.9056 0.4344 32 1 6.0725 0.8675 0.5890 33 1 5.5746 0.2034 -2.1107 34 1 8.1230 0.0037 0.4321 35 1 11.3681 0.3029 -2.3292 36 1 9.8081 0.4463 -4.1994 37 1 6.0397 0.8275 -6.2600 38 1 4.0749 -2.1165 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168404146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:31 Heat of formation + Delta-G solvation = -7.677937 kcal Electronic energy + Delta-G solvation = -23221.609532 eV Core-core repulsion = 19667.973936 eV Total energy + Delta-G solvation = -3553.635596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36871 -40.17242 -38.32064 -37.36016 -36.92407 -35.48327 -34.92475 -31.99589 -31.19118 -30.57204 -28.76209 -26.77848 -26.15111 -24.72310 -23.48988 -22.14328 -21.91566 -20.05882 -18.56063 -18.52346 -18.23860 -17.36328 -17.07459 -16.78254 -16.20697 -15.93234 -15.43088 -15.28488 -15.06680 -14.89569 -14.55672 -14.49816 -14.24887 -14.15286 -13.82490 -13.50082 -13.09568 -12.83566 -12.80155 -12.73951 -12.54226 -12.37711 -11.99707 -11.78656 -11.61085 -11.29713 -11.16007 -10.97947 -10.83565 -10.62234 -9.51303 -9.17994 -9.04820 -8.32509 -6.30733 -0.28777 0.68598 0.77206 0.96236 1.40875 1.56724 1.62384 1.66589 1.78416 2.21441 2.43136 2.65554 3.03408 3.44293 3.47959 3.71046 3.77678 4.07203 4.21930 4.24365 4.39542 4.41146 4.48604 4.58489 4.65204 4.74423 4.79244 4.85808 4.96475 5.04677 5.15347 5.34086 5.39943 5.48807 5.52954 5.67723 5.83033 5.97389 5.98455 6.21986 6.51641 6.68543 6.88365 6.95518 7.01613 8.10143 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004044 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.455992 B = 6922.033896 C = 8703.081134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.496 5.496 3 C 0.150 3.850 4 C -0.228 4.228 5 C 0.019 3.981 6 C 0.164 3.836 7 N -0.737 5.737 8 C 0.138 3.862 9 C -0.163 4.163 10 C -0.097 4.097 11 Cl -0.097 7.097 12 C -0.116 4.116 13 C -0.223 4.223 14 C 0.034 3.966 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.013 3.987 18 N -0.852 5.852 19 Si 1.098 2.902 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.290 1.290 23 C -0.259 4.259 24 C 0.499 3.501 25 O -0.607 6.607 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.219 0.781 30 H 0.169 0.831 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.277 0.723 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 5.542 12.989 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.205 5.205 3 C 0.023 3.977 4 C -0.251 4.251 5 C 0.014 3.986 6 C 0.040 3.960 7 N -0.369 5.369 8 C 0.036 3.964 9 C -0.188 4.188 10 C -0.124 4.124 11 Cl -0.069 7.069 12 C -0.137 4.137 13 C -0.243 4.243 14 C 0.029 3.971 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.200 4.200 18 N -0.477 5.477 19 Si 0.921 3.079 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.217 1.217 23 C -0.282 4.282 24 C 0.303 3.697 25 O -0.495 6.495 26 H 0.110 0.890 27 H 0.145 0.855 28 H 0.090 0.910 29 H 0.236 0.764 30 H 0.186 0.814 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.231 0.769 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.450 4.109 12.141 14.825 hybrid contribution -1.220 0.686 0.548 1.503 sum -8.670 4.795 12.689 16.099 Atomic orbital electron populations 1.22440 0.75187 1.05966 1.05181 1.45539 1.10744 1.06587 1.57612 1.22731 0.93550 0.90020 0.91416 1.20932 0.93266 0.98974 1.11881 1.20290 0.95670 0.93354 0.89263 1.20284 0.88533 1.02469 0.84724 1.43976 1.02932 1.83395 1.06609 1.17781 0.84253 1.01739 0.92635 1.20136 0.90664 1.10196 0.97781 1.20139 0.89408 1.15286 0.87594 1.98250 1.62147 1.97431 1.49033 1.20285 0.99352 1.03252 0.90779 1.20673 0.92854 1.12554 0.98239 1.17641 0.92824 0.95025 0.91639 1.20218 1.01688 1.38506 0.95585 0.92421 1.27967 1.03950 0.97018 0.91114 1.70644 1.15648 1.29398 1.32034 0.83249 0.72977 0.75190 0.76462 1.18456 1.18985 1.21747 1.21981 0.92666 0.99966 1.13553 1.17211 0.89418 0.83363 0.79671 1.90905 1.70704 1.31461 1.56462 0.89023 0.85520 0.91036 0.76419 0.81362 0.91799 0.89629 0.76934 0.85282 0.85912 0.87255 0.91230 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.36 127.77 1.32 1.97 16 2 N -0.50 -9.63 2.99 -674.48 -2.01 -11.65 16 3 C 0.15 1.94 10.28 83.42 0.86 2.80 16 4 C -0.23 -3.98 9.73 22.08 0.21 -3.76 16 5 C 0.02 0.46 5.26 -19.82 -0.10 0.36 16 6 C 0.16 4.40 5.06 85.63 0.43 4.83 16 7 N -0.74 -26.18 5.62 -341.79 -1.92 -28.10 16 8 C 0.14 5.71 6.68 38.97 0.26 5.97 16 9 C -0.16 -6.16 9.07 22.40 0.20 -5.96 16 10 C -0.10 -3.68 6.33 22.49 0.14 -3.54 16 11 Cl -0.10 -3.12 28.94 -2.72 -0.08 -3.20 16 12 C -0.12 -4.69 9.74 22.04 0.21 -4.48 16 13 C -0.22 -10.04 7.20 22.46 0.16 -9.88 16 14 C 0.03 1.60 5.14 -21.16 -0.11 1.49 16 15 C -0.53 -26.99 8.81 23.36 0.21 -26.79 16 16 H 0.06 3.02 6.98 -2.91 -0.02 3.00 16 17 C 0.01 0.65 5.42 85.24 0.46 1.11 16 18 N -0.85 -45.85 13.66 21.82 0.30 -45.56 16 19 Si 1.10 48.54 24.90 68.60 1.71 50.25 16 20 H -0.26 -10.57 6.44 99.48 0.64 -9.93 16 21 H -0.27 -11.71 7.02 99.48 0.70 -11.01 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.26 -7.54 9.63 22.40 0.22 -7.32 16 24 C 0.50 14.92 7.41 84.82 0.63 15.55 16 25 O -0.61 -23.03 16.64 -5.51 -0.09 -23.12 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.13 0.51 8.01 -2.39 -0.02 0.49 16 28 H 0.07 1.26 7.39 -2.39 -0.02 1.24 16 29 H 0.22 0.42 8.04 -2.91 -0.02 0.39 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.06 1.74 7.85 -2.39 -0.02 1.72 16 32 H 0.09 2.00 7.94 -2.39 -0.02 1.98 16 33 H 0.40 15.08 6.75 -92.71 -0.63 14.46 16 34 H 0.13 4.20 6.73 -2.91 -0.02 4.19 16 35 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.11 4.94 4.42 -2.91 -0.01 4.93 16 37 H 0.28 14.66 8.73 -92.70 -0.81 13.85 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -67.40 334.58 3.38 -64.02 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.37 Total: 24.99 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 5.11 Total: -27.64 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.64 Total: -85.30 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.09 Total: -23.12 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.71 Total: 50.25 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.08 Total: -3.20 kcal Total: -67.40 3.38 -64.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168404146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.345 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds