Wall clock time and date at job start Tue Mar 31 2020 12:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46754 * 2 1 4 4 C 1.35767 * 116.99709 * 180.02562 * 3 2 1 5 5 N 1.32119 * 119.71956 * 359.72111 * 4 3 2 6 6 C 1.32026 * 121.73912 * 179.71121 * 5 4 3 7 7 C 1.38206 * 120.97511 * 0.57452 * 6 5 4 8 8 Cl 1.73600 * 120.33344 * 179.74235 * 7 6 5 9 9 C 1.38805 * 119.33164 * 359.72035 * 7 6 5 10 10 C 1.39051 * 118.40872 * 359.97438 * 9 7 6 11 11 N 1.39777 * 120.51038 * 180.02562 * 10 9 7 12 12 C 1.38746 * 120.00299 * 254.16350 * 11 10 9 13 13 C 1.39631 * 119.84419 * 7.64101 * 12 11 10 14 14 C 1.36299 * 120.15241 * 179.72271 * 13 12 11 15 15 C 1.40904 * 119.84104 * 0.57418 * 14 13 12 16 16 C 1.41101 * 120.14943 * 179.67992 * 15 14 13 17 17 H 1.08001 * 119.99977 * 205.40866 * 16 15 14 18 18 C 1.39841 * 119.99864 * 25.41260 * 16 15 14 19 19 N 1.30921 * 120.00088 * 16.17948 * 18 16 15 20 20 Si 1.86800 * 119.99669 * 196.18356 * 18 16 15 21 21 H 1.48495 * 109.47164 * 89.99833 * 20 18 16 22 22 H 1.48502 * 109.46809 * 209.99528 * 20 18 16 23 23 H 1.48500 * 109.47214 * 329.99325 * 20 18 16 24 24 C 1.40903 * 119.70022 * 359.69939 * 15 14 13 25 25 C 1.36300 * 119.84199 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.46591 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46818 * 300.00250 * 1 2 3 28 28 H 1.08996 * 109.47165 * 60.00157 * 1 2 3 29 29 H 1.08999 * 109.47341 * 239.99799 * 2 1 3 30 30 H 1.08996 * 109.47165 * 119.99842 * 2 1 3 31 31 H 1.07996 * 119.51017 * 180.29183 * 6 5 4 32 32 H 1.08006 * 120.79348 * 180.02562 * 9 7 6 33 33 H 0.97006 * 119.99947 * 74.16056 * 11 10 9 34 34 H 1.07994 * 119.91778 * 359.97438 * 13 12 11 35 35 H 1.08001 * 120.07755 * 180.27675 * 14 13 12 36 36 H 0.96999 * 119.99872 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.07679 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.91773 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3523 1.5252 -0.0005 5 7 4.1520 0.4736 0.0046 6 6 5.4661 0.6003 -0.0014 7 6 6.0604 1.8481 -0.0014 8 17 7.7901 1.9953 -0.0026 9 6 5.2602 2.9823 -0.0010 10 6 3.8795 2.8178 -0.0011 11 7 3.0324 3.9296 -0.0012 12 6 2.3510 4.2828 1.1547 13 6 2.6327 3.6275 2.3551 14 6 1.9712 3.9733 3.4955 15 6 0.9925 4.9864 3.4586 16 6 0.2989 5.3449 4.6339 17 1 -0.6849 5.7854 4.5673 18 6 0.8855 5.1298 5.8850 19 7 2.1714 4.9010 5.9745 20 14 -0.1659 5.1691 7.4286 21 1 -0.6803 3.8052 7.7119 22 1 0.6547 5.6366 8.5746 23 1 -1.3077 6.0968 7.2263 24 6 0.7094 5.6395 2.2426 25 6 1.3825 5.2876 1.1109 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 6.0858 -0.2842 -0.0017 32 1 5.6996 3.9689 -0.0014 33 1 2.9209 4.4544 -0.8094 34 1 3.3793 2.8476 2.3807 35 1 2.1931 3.4686 4.4242 36 1 2.5782 4.7514 6.8423 37 1 -0.0399 6.4166 2.2073 38 1 1.1667 5.7877 0.1783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201511439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:13 Heat of formation + Delta-G solvation = 17.212646 kcal Electronic energy + Delta-G solvation = -23635.147071 eV Core-core repulsion = 20082.590812 eV Total energy + Delta-G solvation = -3552.556259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -40.74239 -38.07834 -37.88240 -36.49898 -35.35874 -33.23079 -31.93099 -31.25954 -29.57028 -29.45864 -28.02499 -24.74985 -24.22914 -22.77606 -22.22977 -21.12399 -20.24470 -18.43257 -17.28657 -17.13208 -16.83218 -16.49958 -15.89089 -15.28767 -15.00266 -14.19555 -14.05998 -13.87824 -13.67734 -12.99297 -12.77882 -12.75474 -12.64993 -12.51085 -12.09633 -11.95280 -11.65083 -11.60882 -11.38728 -11.23441 -11.08640 -10.98825 -10.59666 -10.56338 -9.97285 -9.77222 -9.70977 -9.34289 -9.31461 -8.76414 -8.17976 -7.53766 -6.70485 -6.51295 -4.11839 1.00040 1.12980 2.01329 2.85812 3.06350 3.12286 3.14115 3.16076 3.30859 3.62930 3.95212 4.01922 4.34654 4.71074 4.74077 4.99097 5.08719 5.17588 5.21619 5.43096 5.62164 5.75918 5.84539 5.88864 5.92354 6.12785 6.17963 6.20769 6.26219 6.85907 6.89240 7.13828 7.29190 7.31530 7.49656 7.62846 7.71663 7.79700 8.10408 8.22283 8.41324 8.53413 8.71667 9.00473 9.07922 10.32539 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003866 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.681816 B = 7240.150176 C = 8136.238175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.279 6.279 4 C 0.321 3.679 5 N -0.524 5.524 6 C 0.137 3.863 7 C -0.118 4.118 8 Cl -0.064 7.064 9 C -0.053 4.053 10 C 0.128 3.872 11 N -0.695 5.695 12 C 0.080 3.920 13 C -0.142 4.142 14 C -0.127 4.127 15 C 0.083 3.917 16 C -0.465 4.465 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.806 5.806 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.264 1.264 24 C -0.192 4.192 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.165 0.835 32 H 0.151 0.849 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.277 0.723 37 H 0.093 0.907 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -8.299 -11.280 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.185 6.185 4 C 0.138 3.862 5 N -0.249 5.249 6 C -0.019 4.019 7 C -0.148 4.148 8 Cl -0.035 7.035 9 C -0.081 4.081 10 C 0.029 3.971 11 N -0.327 5.327 12 C -0.014 4.014 13 C -0.163 4.163 14 C -0.147 4.147 15 C 0.081 3.919 16 C -0.495 4.495 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.433 5.433 20 Si 0.730 3.270 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.188 1.188 24 C -0.212 4.212 25 C -0.163 4.163 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.182 0.818 32 H 0.168 0.832 33 H 0.233 0.767 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.883 -9.040 -10.978 15.036 hybrid contribution 0.273 0.782 0.542 0.990 sum 5.156 -8.258 -10.436 14.272 Atomic orbital electron populations 1.21795 0.92958 1.02458 1.03788 1.22618 0.95065 0.81444 1.01976 1.86458 1.15747 1.29772 1.86473 1.20731 0.84654 0.89571 0.91235 1.67471 1.05289 1.32375 1.19717 1.22251 0.89293 0.95644 0.94740 1.21724 0.85714 0.95455 1.11882 1.98357 1.09643 1.98272 1.97247 1.21774 0.91707 0.99014 0.95610 1.17267 0.89037 0.86224 1.04555 1.40991 1.50111 1.29317 1.12273 1.17214 0.98203 1.00874 0.85098 1.19999 1.02428 1.01508 0.92411 1.20918 0.99114 0.98245 0.96419 1.17522 0.92081 0.90267 0.92072 1.19411 1.03012 1.36976 0.90133 0.90776 1.25819 0.94697 0.92841 1.00787 1.69853 1.10410 1.36421 1.26567 0.86372 0.80674 0.79390 0.80581 1.19501 1.20499 1.18780 1.20528 1.04277 1.02829 0.93547 1.19779 0.98788 1.00192 0.97570 0.90618 0.91080 0.91807 0.92052 0.91723 0.81818 0.83164 0.76686 0.90274 0.86325 0.91212 0.88841 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.88 6.03 37.16 0.22 1.10 16 3 O -0.28 -4.79 9.75 -19.01 -0.19 -4.97 16 4 C 0.32 5.33 7.01 -16.92 -0.12 5.21 16 5 N -0.52 -7.83 9.21 -13.11 -0.12 -7.95 16 6 C 0.14 1.75 10.97 -17.48 -0.19 1.56 16 7 C -0.12 -1.52 6.34 -39.38 -0.25 -1.77 16 8 Cl -0.06 -0.72 28.98 -51.86 -1.50 -2.22 16 9 C -0.05 -0.76 9.91 -39.07 -0.39 -1.15 16 10 C 0.13 2.11 4.57 -83.43 -0.38 1.73 16 11 N -0.69 -12.14 5.16 -8.10 -0.04 -12.18 16 12 C 0.08 1.73 6.48 -83.70 -0.54 1.19 16 13 C -0.14 -3.38 9.10 -39.76 -0.36 -3.74 16 14 C -0.13 -3.34 8.63 -39.27 -0.34 -3.68 16 15 C 0.08 2.23 5.57 -106.79 -0.59 1.63 16 16 C -0.46 -12.47 9.04 -37.90 -0.34 -12.82 16 17 H 0.07 1.92 7.90 -52.49 -0.41 1.50 16 18 C 0.07 1.90 5.16 -17.34 -0.09 1.81 16 19 N -0.81 -21.32 10.91 55.54 0.61 -20.72 16 20 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.19 -4.65 9.74 -39.27 -0.38 -5.03 16 25 C -0.14 -3.10 9.83 -39.76 -0.39 -3.49 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 33 H 0.40 5.96 8.83 -40.82 -0.36 5.60 16 34 H 0.08 1.84 6.76 -52.49 -0.35 1.49 16 35 H 0.12 3.27 6.15 -52.49 -0.32 2.95 16 36 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 37 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -28.61 344.36 -9.24 -37.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.39 Total: 9.79 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -3.76 Total: -18.86 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.44 Total: -40.85 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.19 Total: -4.97 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.61 -9.24 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201511439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.062 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds