Wall clock time and date at job start Tue Mar 31 2020 12:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34752 * 117.00201 * 2 1 4 4 O 1.21503 * 119.99624 * 0.02562 * 3 2 1 5 5 C 1.47421 * 120.00006 * 179.97438 * 3 2 1 6 6 C 1.40030 * 120.13805 * 269.99948 * 5 3 2 7 7 F 1.35101 * 119.97953 * 0.02562 * 6 5 3 8 8 C 1.38278 * 120.04416 * 180.02562 * 6 5 3 9 9 C 1.38094 * 120.32651 * 359.97438 * 8 6 5 10 10 C 1.39377 * 120.27798 * 0.02562 * 9 8 6 11 11 C 1.48383 * 120.02840 * 179.97438 * 10 9 8 12 12 C 1.39742 * 120.00245 * 129.99231 * 11 10 9 13 13 C 1.38386 * 120.37412 * 179.72209 * 12 11 10 14 14 C 1.37721 * 120.38625 * 0.25873 * 13 12 11 15 15 C 1.40761 * 119.98443 * 0.02562 * 14 13 12 16 16 C 1.41426 * 120.18241 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00082 * 154.84308 * 16 15 14 18 18 C 1.39928 * 119.99987 * 334.84416 * 16 15 14 19 19 N 1.30831 * 120.00428 * 342.70902 * 18 16 15 20 20 Si 1.86809 * 119.99978 * 162.70312 * 18 16 15 21 21 H 1.48500 * 109.47009 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46767 * 120.00130 * 20 18 16 23 23 H 1.48498 * 109.47022 * 240.00144 * 20 18 16 24 24 C 1.38744 * 119.99894 * 310.27687 * 11 10 9 25 25 C 1.39346 * 119.94517 * 0.24976 * 10 9 8 26 26 F 1.35102 * 120.16072 * 179.75153 * 25 10 9 27 27 H 1.09009 * 109.46900 * 59.99791 * 1 2 3 28 28 H 1.09003 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47169 * 299.99953 * 1 2 3 30 30 H 1.08004 * 119.83763 * 179.97438 * 8 6 5 31 31 H 1.08003 * 119.85986 * 180.02562 * 9 8 6 32 32 H 1.07998 * 119.81072 * 0.02562 * 12 11 10 33 33 H 1.08001 * 119.80605 * 180.28063 * 13 12 11 34 34 H 1.08001 * 120.00714 * 180.02562 * 14 13 12 35 35 H 0.96992 * 120.00559 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.18561 * 359.96910 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5360 1.2777 0.0006 6 6 4.2376 1.3148 1.2118 7 9 3.5650 1.2793 2.3830 8 6 5.6184 1.3876 1.2101 9 6 6.3133 1.4237 0.0173 10 6 5.6286 1.3876 -1.1962 11 6 6.3808 1.4273 -2.4747 12 6 6.1146 0.4848 -3.4715 13 6 6.8075 0.5182 -4.6690 14 6 7.7708 1.4773 -4.8899 15 6 8.0557 2.4306 -3.8943 16 6 9.0445 3.4170 -4.1165 17 1 9.0002 4.3556 -3.5841 18 6 10.0803 3.1769 -5.0262 19 7 10.3403 1.9547 -5.4138 20 14 11.0918 4.6015 -5.6873 21 1 10.6012 5.8728 -5.0971 22 1 12.5184 4.4059 -5.3245 23 1 10.9601 4.6581 -7.1654 24 6 7.3524 2.3965 -2.6780 25 6 4.2368 1.3200 -1.2078 26 9 3.5685 1.2898 -2.3816 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.1562 1.4164 2.1463 31 1 7.3918 1.4802 0.0247 32 1 5.3606 -0.2709 -3.3083 33 1 6.5912 -0.2120 -5.4348 34 1 8.3075 1.4979 -5.8269 35 1 11.0585 1.7882 -6.0441 36 1 7.5634 3.1239 -1.9081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204726805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:06 Heat of formation + Delta-G solvation = -143.807142 kcal Electronic energy + Delta-G solvation = -25335.256844 eV Core-core repulsion = 21191.628812 eV Total energy + Delta-G solvation = -4143.628032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.30156 -50.26611 -41.72242 -40.25046 -38.88091 -37.73551 -35.65500 -33.42707 -32.43502 -31.76896 -29.57887 -28.77940 -27.21655 -25.57928 -24.42357 -22.98180 -22.42621 -21.78886 -19.75203 -19.21440 -18.90359 -18.66665 -18.20660 -17.31008 -17.18138 -17.15508 -16.75020 -16.64559 -16.39038 -16.12778 -15.56627 -15.24731 -14.97911 -14.81072 -14.43015 -14.28641 -13.96803 -13.58405 -13.41362 -13.28164 -13.20114 -13.03208 -12.84439 -12.75645 -12.47020 -12.14826 -12.01201 -12.00865 -11.57246 -11.35559 -11.06457 -10.40057 -10.08791 -9.42492 -9.02200 -8.63412 -6.34837 -0.54206 -0.33798 0.59016 0.94333 0.99967 1.39879 1.41620 1.51679 1.55688 2.12256 2.22817 2.44844 2.72694 3.11498 3.33429 3.45324 3.59299 3.71441 3.88758 4.16813 4.23300 4.34626 4.43385 4.46955 4.58904 4.60994 4.70871 4.82007 4.95429 5.01370 5.02807 5.10577 5.27344 5.40596 5.47063 5.63700 5.90951 6.06590 6.11008 6.25799 6.30933 6.66532 6.93424 6.99062 8.34418 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.003143 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.956441 B = 8907.595639 C = 9460.762955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.351 6.351 3 C 0.524 3.476 4 O -0.511 6.511 5 C -0.196 4.196 6 C 0.155 3.845 7 F -0.123 7.123 8 C -0.130 4.130 9 C -0.024 4.024 10 C -0.070 4.070 11 C -0.043 4.043 12 C -0.215 4.215 13 C -0.109 4.109 14 C -0.178 4.178 15 C 0.080 3.920 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.038 3.962 19 N -0.824 5.824 20 Si 0.979 3.021 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.268 1.268 24 C -0.206 4.206 25 C 0.156 3.844 26 F -0.129 7.129 27 H 0.064 0.936 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.196 0.804 31 H 0.172 0.828 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.288 0.712 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 -4.098 11.581 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.367 3.633 4 O -0.400 6.400 5 C -0.199 4.199 6 C 0.136 3.864 7 F -0.101 7.101 8 C -0.148 4.148 9 C -0.042 4.042 10 C -0.071 4.071 11 C -0.043 4.043 12 C -0.234 4.234 13 C -0.127 4.127 14 C -0.198 4.198 15 C 0.077 3.923 16 C -0.526 4.526 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.450 5.450 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.190 1.190 23 H -0.193 1.193 24 C -0.225 4.225 25 C 0.136 3.864 26 F -0.108 7.108 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.090 0.910 30 H 0.213 0.787 31 H 0.190 0.810 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.655 -3.963 11.444 15.488 hybrid contribution -0.136 0.487 -0.842 0.983 sum -9.791 -3.476 10.602 14.844 Atomic orbital electron populations 1.23765 0.73433 1.06579 1.03130 1.86660 1.26082 1.30932 1.82975 1.20804 0.88449 0.82269 0.71797 1.90856 1.66844 1.36924 1.45354 1.18928 0.90606 1.16703 0.93669 1.17305 0.90464 1.00150 0.78514 1.91552 1.80665 1.93371 1.44536 1.21427 0.89997 1.01926 1.01491 1.21523 1.02253 0.91811 0.88572 1.19090 0.89764 1.02515 0.95737 1.18249 0.96802 0.97124 0.92122 1.20636 1.04892 1.02488 0.95361 1.20866 0.96477 0.98378 0.96982 1.21403 0.99711 0.98949 0.99706 1.17873 0.91440 0.92305 0.90641 1.19828 1.08086 1.02228 1.22439 0.90369 1.26689 0.98005 0.98744 0.94304 1.69861 1.26886 1.22260 1.26030 0.85206 0.77753 0.78523 0.78544 1.18209 1.19014 1.19257 1.21184 1.01919 1.01770 0.97651 1.17357 0.89308 1.00435 0.79316 1.91523 1.80430 1.93263 1.45553 0.91681 0.84054 0.90959 0.78658 0.81036 0.87600 0.87015 0.87932 0.90132 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.57 113.37 1.20 1.61 16 2 O -0.35 -9.30 10.58 -56.63 -0.60 -9.90 16 3 C 0.52 16.48 6.67 70.24 0.47 16.95 16 4 O -0.51 -18.16 16.90 19.83 0.34 -17.83 16 5 C -0.20 -5.99 5.76 -20.06 -0.12 -6.10 16 6 C 0.16 3.88 7.29 22.71 0.17 4.05 16 7 F -0.12 -2.96 16.82 44.97 0.76 -2.21 16 8 C -0.13 -2.59 9.99 22.24 0.22 -2.37 16 9 C -0.02 -0.60 9.47 22.51 0.21 -0.38 16 10 C -0.07 -2.35 5.47 -20.03 -0.11 -2.46 16 11 C -0.04 -1.78 5.30 -20.09 -0.11 -1.89 16 12 C -0.21 -9.21 8.87 22.67 0.20 -9.01 16 13 C -0.11 -4.97 10.01 22.18 0.22 -4.75 16 14 C -0.18 -9.15 8.69 22.76 0.20 -8.95 16 15 C 0.08 4.12 5.57 -21.32 -0.12 4.01 16 16 C -0.50 -25.69 9.05 23.46 0.21 -25.48 16 17 H 0.08 3.90 7.90 -2.91 -0.02 3.87 16 18 C 0.04 1.83 5.14 85.25 0.44 2.27 16 19 N -0.82 -41.73 10.97 21.82 0.24 -41.49 16 20 Si 0.98 37.06 29.59 68.60 2.03 39.09 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 24 C -0.21 -9.42 9.22 22.95 0.21 -9.21 16 25 C 0.16 5.30 7.14 22.90 0.16 5.46 16 26 F -0.13 -4.89 15.46 44.97 0.70 -4.20 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.17 3.74 8.02 -2.91 -0.02 3.72 16 32 H 0.11 4.15 7.78 -2.91 -0.02 4.12 16 33 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 34 H 0.10 5.52 6.18 -2.91 -0.02 5.50 16 35 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 36 H 0.11 4.62 8.03 -2.91 -0.02 4.60 16 Total: -1.00 -63.22 332.58 8.06 -55.17 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.14 Total: 17.63 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.46 Total: -36.26 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.24 Total: -41.49 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.26 Total: -27.73 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 1.45 Total: -6.40 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -63.22 8.06 -55.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204726805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.640 kcal (2) G-P(sol) polarization free energy of solvation -63.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds