Wall clock time and date at job start Tue Mar 31 2020 11:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 O 1.42905 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.35847 * 116.99859 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.93691 * 0.02562 * 5 4 3 7 7 C 1.37851 * 120.08371 * 179.97438 * 6 5 4 8 8 C 1.39480 * 119.95114 * 0.02562 * 7 6 5 9 9 C 1.48218 * 120.06421 * 179.97438 * 8 7 6 10 10 C 1.40091 * 119.99023 * 4.72488 * 9 8 7 11 11 N 1.32159 * 120.28781 * 179.70631 * 10 9 8 12 12 C 1.31896 * 120.29047 * 0.57443 * 11 10 9 13 13 C 1.40815 * 119.97599 * 359.70414 * 12 11 10 14 14 C 1.41313 * 120.14396 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99913 * 353.75857 * 14 13 12 16 16 C 1.40042 * 120.00225 * 173.75755 * 14 13 12 17 17 N 1.30735 * 119.99764 * 6.30043 * 16 14 13 18 18 Si 1.86795 * 120.00254 * 186.30235 * 16 14 13 19 19 H 1.48498 * 109.47161 * 59.99814 * 18 16 14 20 20 H 1.48498 * 109.47277 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47047 * 299.99870 * 18 16 14 22 22 N 1.32552 * 119.98573 * 185.00168 * 9 8 7 23 23 C 1.39452 * 119.87097 * 0.02880 * 8 7 6 24 24 C 1.37965 * 119.91500 * 359.95189 * 23 8 7 25 25 Cl 1.73600 * 119.97745 * 180.02562 * 24 23 8 26 26 H 1.08999 * 109.47319 * 60.00381 * 1 2 3 27 27 H 1.09007 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47346 * 299.99439 * 1 2 3 29 29 H 1.09001 * 109.47039 * 240.00131 * 2 1 3 30 30 H 1.09001 * 109.47012 * 120.00046 * 2 1 3 31 31 H 1.09001 * 109.47229 * 60.00247 * 3 2 1 32 32 H 1.09001 * 109.47387 * 299.99816 * 3 2 1 33 33 H 1.07998 * 119.95339 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.02295 * 179.74856 * 7 6 5 35 35 H 1.08003 * 119.85382 * 359.97438 * 10 9 8 36 36 H 1.08003 * 120.01028 * 179.72899 * 12 11 10 37 37 H 0.97004 * 119.99932 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.04478 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0856 2.6531 0.0012 6 6 3.3280 3.8167 0.0018 7 6 3.9506 5.0466 0.0030 8 6 5.3433 5.1221 0.0030 9 6 6.0154 6.4432 0.0037 10 6 5.2551 7.6155 0.1042 11 7 5.8486 8.7963 0.1112 12 6 7.1611 8.8818 0.0123 13 6 7.9362 7.7111 -0.0952 14 6 9.3426 7.7986 -0.2020 15 1 9.8176 8.7633 -0.3028 16 6 10.1205 6.6344 -0.1770 17 7 9.5424 5.4618 -0.1792 18 14 11.9841 6.7568 -0.1405 19 1 12.4078 7.4975 1.0749 20 1 12.5695 5.3923 -0.1184 21 1 12.4566 7.4781 -1.3496 22 7 7.3351 6.5151 -0.0963 23 6 6.1023 3.9522 0.0013 24 6 5.4735 2.7242 0.0005 25 17 6.4167 1.2668 -0.0009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.2496 3.7581 0.0013 34 1 3.3604 5.9511 -0.0007 35 1 4.1795 7.5539 0.1807 36 1 7.6411 9.8493 0.0140 37 1 10.0812 4.6553 -0.1623 38 1 7.1809 4.0074 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204778896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:09 Heat of formation + Delta-G solvation = 7.830740 kcal Electronic energy + Delta-G solvation = -23042.863182 eV Core-core repulsion = 19489.900092 eV Total energy + Delta-G solvation = -3552.963089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.08740 -39.02803 -37.37302 -36.01379 -34.19932 -34.06819 -32.36080 -31.06394 -30.51911 -28.60483 -26.84313 -25.91430 -23.31732 -23.11110 -22.10799 -21.06730 -20.61720 -18.17347 -17.65021 -16.47671 -16.40445 -15.79171 -15.44062 -15.37436 -14.76008 -14.39003 -14.15497 -14.01398 -13.53120 -13.30382 -13.26780 -12.71925 -12.61167 -12.37745 -11.96689 -11.62455 -11.61975 -11.50016 -11.41499 -11.31871 -11.13309 -10.85085 -10.75940 -10.70793 -10.55976 -10.32066 -9.89298 -9.61017 -9.30109 -8.55671 -8.28354 -7.54145 -7.30603 -6.60975 -4.76866 1.26814 1.53639 2.52129 2.56266 2.92735 2.99895 3.01235 3.12900 3.13487 3.80003 4.02992 4.62374 4.62684 4.64164 4.95772 4.97460 4.99337 5.13367 5.16247 5.29370 5.39829 5.61278 5.66049 5.70386 5.75812 5.79603 5.88167 5.92241 6.05670 6.23216 6.30031 6.36897 6.53478 6.77968 6.86959 7.01641 7.05865 7.17030 7.41172 7.55726 7.95619 8.32692 8.57153 9.14598 9.71287 10.05503 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003551 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.139005 B = 7882.485656 C = 9508.463454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.057 3.943 4 O -0.307 6.307 5 C 0.130 3.870 6 C -0.207 4.207 7 C -0.064 4.064 8 C -0.041 4.041 9 C 0.140 3.860 10 C -0.109 4.109 11 N -0.429 5.429 12 C -0.061 4.061 13 C 0.208 3.792 14 C -0.410 4.410 15 H 0.091 0.909 16 C 0.067 3.933 17 N -0.710 5.710 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.263 1.263 22 N -0.444 5.444 23 C -0.033 4.033 24 C -0.074 4.074 25 Cl -0.068 7.068 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.279 0.721 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -9.961 0.265 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.221 6.221 5 C 0.084 3.916 6 C -0.226 4.226 7 C -0.084 4.084 8 C -0.043 4.043 9 C -0.007 4.007 10 C -0.268 4.268 11 N -0.140 5.140 12 C -0.232 4.232 13 C 0.082 3.918 14 C -0.441 4.441 15 H 0.109 0.891 16 C -0.160 4.160 17 N -0.330 5.330 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.187 1.187 22 N -0.161 5.161 23 C -0.052 4.052 24 C -0.101 4.101 25 Cl -0.039 7.039 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.672 -10.530 0.264 14.995 hybrid contribution 0.678 0.076 0.022 0.683 sum -9.994 -10.454 0.286 14.466 Atomic orbital electron populations 1.21689 0.94378 1.02388 1.02204 1.21471 0.95844 0.94998 1.03760 1.22869 0.78788 0.98665 1.01470 1.86090 1.20910 1.26472 1.88580 1.18686 0.90361 0.84721 0.97854 1.20961 0.99615 0.91482 1.10494 1.21141 0.93845 0.97203 0.96183 1.18556 0.91882 0.91957 1.01945 1.20498 0.92522 0.91338 0.96344 1.22470 0.98802 0.88635 1.16878 1.67660 1.11774 1.27123 1.07424 1.23209 0.89856 0.98706 1.11392 1.19344 0.94712 0.87447 0.90314 1.19610 0.89606 0.94461 1.40462 0.89062 1.26117 1.01528 0.94910 0.93432 1.70003 1.37684 0.98465 1.26882 0.86269 0.81267 0.78636 0.80097 1.18717 1.20003 1.18737 1.69527 1.05488 1.25768 1.15326 1.21493 1.02877 0.88097 0.92720 1.20126 0.88235 0.88710 1.13032 1.98330 1.72227 1.36087 1.97276 0.92369 0.91850 0.92378 0.90826 0.90830 0.92010 0.92001 0.84991 0.84841 0.85484 0.84815 0.90954 0.81474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.58 4.74 37.16 0.18 0.75 16 4 O -0.31 -4.34 9.58 -19.26 -0.18 -4.52 16 5 C 0.13 2.07 6.69 -39.08 -0.26 1.80 16 6 C -0.21 -2.97 9.02 -39.49 -0.36 -3.33 16 7 C -0.06 -1.05 9.41 -39.26 -0.37 -1.42 16 8 C -0.04 -0.83 5.88 -104.88 -0.62 -1.45 16 9 C 0.14 3.31 6.73 -82.76 -0.56 2.75 16 10 C -0.11 -2.49 10.61 -16.72 -0.18 -2.67 16 11 N -0.43 -10.41 10.47 -12.04 -0.13 -10.53 16 12 C -0.06 -1.51 10.97 -16.55 -0.18 -1.69 16 13 C 0.21 5.46 6.54 -84.84 -0.55 4.90 16 14 C -0.41 -10.22 9.15 -37.74 -0.35 -10.56 16 15 H 0.09 2.08 7.86 -52.48 -0.41 1.67 16 16 C 0.07 1.59 5.49 -17.34 -0.10 1.49 16 17 N -0.71 -17.48 11.51 55.55 0.64 -16.84 16 18 Si 0.91 17.50 29.56 -169.99 -5.03 12.47 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 N -0.44 -11.59 7.17 -7.51 -0.05 -11.65 16 23 C -0.03 -0.65 9.35 -39.23 -0.37 -1.02 16 24 C -0.07 -1.32 6.33 -39.41 -0.25 -1.57 16 25 Cl -0.07 -1.14 28.49 -51.86 -1.48 -2.62 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 32 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 34 H 0.13 1.92 6.21 -52.49 -0.33 1.59 16 35 H 0.13 2.47 6.21 -52.48 -0.33 2.14 16 36 H 0.13 2.96 8.06 -52.48 -0.42 2.53 16 37 H 0.28 6.27 8.29 -40.82 -0.34 5.94 16 38 H 0.17 3.74 7.55 -52.49 -0.40 3.35 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -28.31 341.71 -9.09 -37.40 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.26 Total: 4.89 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.75 Total: -13.76 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.46 Total: -39.02 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.18 Total: -4.52 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.48 Total: -2.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.31 -9.09 -37.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204778896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.233 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds