Wall clock time and date at job start Tue Mar 31 2020 11:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 O 1.42905 * 109.47008 * 179.97438 * 3 2 1 5 5 C 1.35847 * 116.99859 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.93691 * 0.02562 * 5 4 3 7 7 C 1.37851 * 120.08371 * 179.97438 * 6 5 4 8 8 C 1.39480 * 119.95114 * 0.02562 * 7 6 5 9 9 C 1.48218 * 120.06421 * 179.97438 * 8 7 6 10 10 C 1.40091 * 119.99023 * 4.72488 * 9 8 7 11 11 N 1.32159 * 120.28781 * 179.70631 * 10 9 8 12 12 C 1.31896 * 120.29047 * 0.57443 * 11 10 9 13 13 C 1.40815 * 119.97599 * 359.70414 * 12 11 10 14 14 C 1.41313 * 120.14396 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99913 * 353.75857 * 14 13 12 16 16 C 1.40042 * 120.00225 * 173.75755 * 14 13 12 17 17 N 1.30735 * 119.99764 * 6.30043 * 16 14 13 18 18 Si 1.86795 * 120.00254 * 186.30235 * 16 14 13 19 19 H 1.48498 * 109.47161 * 59.99814 * 18 16 14 20 20 H 1.48498 * 109.47277 * 180.02562 * 18 16 14 21 21 H 1.48510 * 109.47047 * 299.99870 * 18 16 14 22 22 N 1.32552 * 119.98573 * 185.00168 * 9 8 7 23 23 C 1.39452 * 119.87097 * 0.02880 * 8 7 6 24 24 C 1.37965 * 119.91500 * 359.95189 * 23 8 7 25 25 Cl 1.73600 * 119.97745 * 180.02562 * 24 23 8 26 26 H 1.08999 * 109.47319 * 60.00381 * 1 2 3 27 27 H 1.09007 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47346 * 299.99439 * 1 2 3 29 29 H 1.09001 * 109.47039 * 240.00131 * 2 1 3 30 30 H 1.09001 * 109.47012 * 120.00046 * 2 1 3 31 31 H 1.09001 * 109.47229 * 60.00247 * 3 2 1 32 32 H 1.09001 * 109.47387 * 299.99816 * 3 2 1 33 33 H 1.07998 * 119.95339 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.02295 * 179.74856 * 7 6 5 35 35 H 1.08003 * 119.85382 * 359.97438 * 10 9 8 36 36 H 1.08003 * 120.01028 * 179.72899 * 12 11 10 37 37 H 0.97004 * 119.99932 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.04478 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0856 2.6531 0.0012 6 6 3.3280 3.8167 0.0018 7 6 3.9506 5.0466 0.0030 8 6 5.3433 5.1221 0.0030 9 6 6.0154 6.4432 0.0037 10 6 5.2551 7.6155 0.1042 11 7 5.8486 8.7963 0.1112 12 6 7.1611 8.8818 0.0123 13 6 7.9362 7.7111 -0.0952 14 6 9.3426 7.7986 -0.2020 15 1 9.8176 8.7633 -0.3028 16 6 10.1205 6.6344 -0.1770 17 7 9.5424 5.4618 -0.1792 18 14 11.9841 6.7568 -0.1405 19 1 12.4078 7.4975 1.0749 20 1 12.5695 5.3923 -0.1184 21 1 12.4566 7.4781 -1.3496 22 7 7.3351 6.5151 -0.0963 23 6 6.1023 3.9522 0.0013 24 6 5.4735 2.7242 0.0005 25 17 6.4167 1.2668 -0.0009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.2496 3.7581 0.0013 34 1 3.3604 5.9511 -0.0007 35 1 4.1795 7.5539 0.1807 36 1 7.6411 9.8493 0.0140 37 1 10.0812 4.6553 -0.1623 38 1 7.1809 4.0074 0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204778896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:09 Heat of formation + Delta-G solvation = -6.923380 kcal Electronic energy + Delta-G solvation = -23043.502968 eV Core-core repulsion = 19489.900092 eV Total energy + Delta-G solvation = -3553.602876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39039 -40.68136 -38.64659 -37.36589 -35.93236 -34.90792 -34.04845 -32.72778 -31.88519 -30.09692 -28.07534 -27.31335 -24.86795 -24.53560 -23.44647 -22.33958 -21.88828 -19.55298 -19.23387 -18.03112 -17.26897 -17.25630 -17.16909 -16.85977 -16.37233 -15.54452 -15.31765 -15.14214 -14.94891 -14.90259 -14.68916 -13.90406 -13.65203 -13.42911 -13.31524 -13.14828 -12.99435 -12.89976 -12.58958 -12.52744 -12.35024 -12.27909 -12.06800 -11.86012 -11.71447 -11.67864 -11.53253 -11.46615 -10.96505 -10.05554 -9.83207 -9.36839 -8.81827 -8.39497 -6.65537 -0.20515 0.19007 0.86572 1.17750 1.18900 1.41104 1.53206 1.55417 2.09409 2.18596 2.56239 2.88540 3.51651 3.74502 3.84379 3.89049 3.99588 4.01249 4.10433 4.24592 4.31413 4.34682 4.48793 4.58501 4.59879 4.67613 4.78823 4.86162 4.87771 5.07818 5.12186 5.15262 5.17055 5.22095 5.27913 5.38530 5.56929 5.65101 5.77917 6.11718 6.30585 6.49163 6.71272 7.29653 7.87785 8.29744 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003551 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.139005 B = 7882.485656 C = 9508.463454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.045 3.955 4 O -0.317 6.317 5 C 0.143 3.857 6 C -0.190 4.190 7 C -0.050 4.050 8 C -0.075 4.075 9 C 0.132 3.868 10 C -0.114 4.114 11 N -0.436 5.436 12 C -0.085 4.085 13 C 0.177 3.823 14 C -0.436 4.436 15 H 0.103 0.897 16 C 0.024 3.976 17 N -0.741 5.741 18 Si 0.991 3.009 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.255 1.255 22 N -0.473 5.473 23 C -0.047 4.047 24 C -0.089 4.089 25 Cl -0.066 7.066 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.284 0.716 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 -10.775 0.312 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.029 4.029 4 O -0.230 6.230 5 C 0.096 3.904 6 C -0.209 4.209 7 C -0.069 4.069 8 C -0.077 4.077 9 C -0.016 4.016 10 C -0.273 4.273 11 N -0.148 5.148 12 C -0.254 4.254 13 C 0.051 3.949 14 C -0.468 4.468 15 H 0.121 0.879 16 C -0.200 4.200 17 N -0.361 5.361 18 Si 0.810 3.190 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.179 1.179 22 N -0.192 5.192 23 C -0.066 4.066 24 C -0.117 4.117 25 Cl -0.038 7.038 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.195 0.805 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.094 0.906 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.798 -11.333 0.310 17.098 hybrid contribution 1.123 0.157 0.008 1.134 sum -11.675 -11.177 0.318 16.165 Atomic orbital electron populations 1.21675 0.92547 1.03169 1.02853 1.21494 0.97262 0.93825 1.03309 1.23289 0.76343 1.00283 1.02997 1.86110 1.23489 1.25566 1.87884 1.18768 0.89693 0.86049 0.95883 1.21364 1.01573 0.89821 1.08095 1.21374 0.92088 0.99108 0.94352 1.18564 0.93588 0.90274 1.05257 1.21086 0.92057 0.93416 0.95009 1.23032 1.00434 0.88000 1.15854 1.67690 1.11602 1.27906 1.07585 1.23388 0.90237 0.99000 1.12727 1.19812 0.95802 0.88199 0.91107 1.20019 0.89802 0.95681 1.41255 0.87912 1.27049 1.06349 0.94108 0.92492 1.70118 1.39599 0.99215 1.27200 0.85117 0.74804 0.78746 0.80293 1.18182 1.19481 1.17945 1.69534 1.07075 1.26039 1.16505 1.21184 1.01493 0.89456 0.94516 1.20139 0.89470 0.88056 1.13986 1.98320 1.72502 1.35626 1.97314 0.91715 0.91108 0.91703 0.91359 0.91337 0.90350 0.90383 0.80547 0.82378 0.81904 0.83391 0.90552 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.65 6.30 30.59 0.19 -1.46 16 3 C 0.05 0.74 4.74 71.98 0.34 1.08 16 4 O -0.32 -8.13 9.58 -91.83 -0.88 -9.01 16 5 C 0.14 4.23 6.69 22.60 0.15 4.38 16 6 C -0.19 -4.76 9.02 22.33 0.20 -4.55 16 7 C -0.05 -1.51 9.41 22.48 0.21 -1.30 16 8 C -0.07 -3.03 5.88 -20.03 -0.12 -3.14 16 9 C 0.13 6.34 6.73 42.14 0.28 6.62 16 10 C -0.11 -5.18 10.61 85.09 0.90 -4.27 16 11 N -0.44 -21.33 10.47 -192.01 -2.01 -23.34 16 12 C -0.09 -4.30 10.97 85.31 0.94 -3.36 16 13 C 0.18 9.66 6.54 40.22 0.26 9.92 16 14 C -0.44 -22.52 9.15 23.46 0.21 -22.30 16 15 H 0.10 4.82 7.86 -2.91 -0.02 4.80 16 16 C 0.02 1.16 5.49 85.29 0.47 1.63 16 17 N -0.74 -38.07 11.51 21.84 0.25 -37.82 16 18 Si 0.99 36.36 29.56 68.60 2.03 38.39 16 19 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 20 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 22 N -0.47 -25.85 7.17 -177.67 -1.27 -27.12 16 23 C -0.05 -1.94 9.35 22.50 0.21 -1.73 16 24 C -0.09 -3.18 6.33 22.38 0.14 -3.04 16 25 Cl -0.07 -2.24 28.49 -2.72 -0.08 -2.32 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.06 7.65 -2.39 -0.02 1.04 16 32 H 0.08 1.06 7.66 -2.39 -0.02 1.05 16 33 H 0.18 2.84 6.28 -2.91 -0.02 2.83 16 34 H 0.16 3.92 6.21 -2.91 -0.02 3.90 16 35 H 0.16 5.95 6.21 -2.91 -0.02 5.94 16 36 H 0.15 6.75 8.06 -2.91 -0.02 6.72 16 37 H 0.28 13.32 8.29 -92.70 -0.77 12.55 16 38 H 0.13 6.44 7.55 -2.91 -0.02 6.42 16 Total: -1.00 -64.52 341.71 4.25 -60.27 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 1.10 Total: 23.09 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 5.11 Total: -22.15 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -3.03 Total: -88.28 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.88 Total: -9.01 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.32 kcal Total: -64.52 4.25 -60.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204778896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.350 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds