Wall clock time and date at job start Tue Mar 31 2020 12:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35612 * 117.00031 * 2 1 4 4 C 1.39125 * 119.88623 * 0.02562 * 3 2 1 5 5 C 1.36432 * 120.44110 * 179.97438 * 4 3 2 6 6 C 1.40912 * 120.19989 * 0.02562 * 5 4 3 7 7 C 1.41244 * 120.12150 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99554 * 334.54584 * 7 6 5 9 9 C 1.39842 * 120.00337 * 154.54486 * 7 6 5 10 10 N 1.30901 * 120.00172 * 343.04183 * 9 7 6 11 11 Si 1.86805 * 120.00212 * 163.04407 * 9 7 6 12 12 H 1.48497 * 109.46840 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47063 * 119.99810 * 11 9 7 14 14 H 1.48501 * 109.46942 * 239.99747 * 11 9 7 15 15 C 1.40608 * 119.76391 * 359.97438 * 6 5 4 16 16 C 1.38622 * 119.56980 * 359.71974 * 15 6 5 17 17 C 1.48237 * 120.10313 * 180.27492 * 16 15 6 18 18 C 1.39308 * 120.15454 * 65.29772 * 17 16 15 19 19 C 1.38197 * 119.92868 * 179.97438 * 18 17 16 20 20 F 1.35099 * 119.88133 * 179.97438 * 19 18 17 21 21 C 1.38620 * 120.24150 * 0.02562 * 19 18 17 22 22 C 1.38129 * 120.31283 * 359.95785 * 21 19 18 23 23 C 1.38800 * 120.06377 * 359.78940 * 22 21 19 24 24 S 1.76200 * 120.12168 * 180.25756 * 23 22 21 25 25 C 1.81397 * 102.99822 * 0.22886 * 24 23 22 26 26 H 1.09004 * 109.47129 * 59.99713 * 1 2 3 27 27 H 1.08996 * 109.46899 * 299.99687 * 1 2 3 28 28 H 1.08997 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.77881 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.89598 * 180.02562 * 5 4 3 31 31 H 0.96995 * 120.00829 * 179.97438 * 10 9 7 32 32 H 1.08001 * 120.21416 * 180.02562 * 15 6 5 33 33 H 1.07996 * 120.03722 * 359.95238 * 18 17 16 34 34 H 1.08002 * 119.84433 * 179.97438 * 21 19 18 35 35 H 1.07995 * 119.96346 * 180.02562 * 22 21 19 36 36 H 1.08999 * 109.47262 * 300.00108 * 25 24 23 37 37 H 1.09000 * 109.47185 * 60.00012 * 25 24 23 38 38 H 1.09002 * 109.47465 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2847 2.3736 0.0005 5 6 1.8922 3.5952 0.0011 6 6 3.2983 3.6874 0.0005 7 6 3.9256 4.9529 0.0005 8 1 3.4085 5.8119 -0.4011 9 6 5.2161 5.0937 0.5206 10 7 5.7146 4.1639 1.2954 11 14 6.2286 6.6088 0.1096 12 1 5.4434 7.5028 -0.7789 13 1 6.5704 7.3303 1.3616 14 1 7.4771 6.1973 -0.5812 15 6 4.0748 2.5152 0.0000 16 6 3.4474 1.2791 0.0059 17 6 4.2544 0.0357 0.0115 18 6 5.0579 -0.2721 1.1072 19 6 5.8079 -1.4329 1.1077 20 9 6.5872 -1.7302 2.1705 21 6 5.7645 -2.2927 0.0213 22 6 4.9710 -1.9975 -1.0702 23 6 4.2084 -0.8378 -1.0821 24 16 3.1905 -0.4631 -2.4707 25 6 3.4798 -1.8690 -3.5798 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2065 2.3108 0.0014 30 1 1.2936 4.4942 0.0019 31 1 6.6098 4.2613 1.6558 32 1 5.1530 2.5774 0.0000 33 1 5.0948 0.3957 1.9551 34 1 6.3536 -3.1979 0.0283 35 1 4.9411 -2.6715 -1.9134 36 1 4.5379 -1.9173 -3.8369 37 1 3.1846 -2.7921 -3.0809 38 1 2.8903 -1.7428 -4.4879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205968588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:49 Heat of formation + Delta-G solvation = -50.710794 kcal Electronic energy + Delta-G solvation = -23995.124023 eV Core-core repulsion = 20421.746127 eV Total energy + Delta-G solvation = -3573.377896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.88559 -40.79363 -39.45843 -37.99314 -35.22084 -33.62459 -31.90424 -30.93538 -29.96287 -29.53925 -28.24679 -26.41291 -24.45547 -23.79034 -22.45955 -21.81085 -19.40330 -18.56791 -18.35404 -17.94791 -17.42682 -17.01340 -16.60485 -16.34333 -16.20616 -15.80092 -15.67548 -15.20671 -14.84863 -14.54806 -14.43401 -14.27250 -14.16968 -13.76042 -13.64253 -13.36492 -13.19091 -12.89229 -12.84665 -12.69999 -12.41571 -12.31384 -12.24812 -11.71283 -11.55399 -11.27371 -10.92437 -10.83440 -10.45437 -10.08547 -9.34526 -8.83804 -8.55127 -8.15747 -6.19728 0.01808 0.15315 0.68385 0.93508 1.04175 1.39013 1.49944 1.53562 1.70137 2.23297 2.49141 2.73839 2.88406 3.25124 3.64222 3.71437 3.91178 4.09616 4.28142 4.33479 4.36212 4.39722 4.46959 4.55940 4.62187 4.75864 4.81600 4.86229 4.93615 5.06320 5.08942 5.10236 5.21185 5.29502 5.35373 5.57054 5.61811 5.81792 5.90777 6.06568 6.27259 6.59007 6.84587 6.98331 7.12020 8.40134 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.005509 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.259722 B = 5081.825375 C = 6221.740419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.043 3.957 4 C -0.175 4.175 5 C -0.192 4.192 6 C 0.051 3.949 7 C -0.498 4.498 8 H 0.074 0.926 9 C 0.035 3.965 10 N -0.834 5.834 11 Si 0.975 3.025 12 H -0.257 1.257 13 H -0.268 1.268 14 H -0.268 1.268 15 C -0.124 4.124 16 C -0.081 4.081 17 C 0.013 3.987 18 C -0.143 4.143 19 C 0.077 3.923 20 F -0.146 7.146 21 C -0.130 4.130 22 C -0.104 4.104 23 C -0.086 4.086 24 S -0.122 6.122 25 C -0.149 4.149 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.284 0.716 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -13.166 -6.596 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C -0.002 4.002 4 C -0.194 4.194 5 C -0.212 4.212 6 C 0.049 3.951 7 C -0.528 4.528 8 H 0.093 0.907 9 C -0.178 4.178 10 N -0.461 5.461 11 Si 0.797 3.203 12 H -0.181 1.181 13 H -0.193 1.193 14 H -0.193 1.193 15 C -0.143 4.143 16 C -0.083 4.083 17 C 0.007 3.993 18 C -0.164 4.164 19 C 0.056 3.944 20 F -0.125 7.125 21 C -0.150 4.150 22 C -0.128 4.128 23 C -0.199 4.199 24 S 0.122 5.878 25 C -0.317 4.317 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.216 -12.504 -6.768 14.577 hybrid contribution 1.224 0.265 0.909 1.547 sum -1.992 -12.239 -5.859 13.714 Atomic orbital electron populations 1.23040 0.78666 1.04134 1.00808 1.85933 1.21377 1.26409 1.90044 1.18534 0.90306 0.84302 1.07067 1.20650 0.99144 0.91996 1.07564 1.20856 0.94279 0.96486 1.09583 1.17806 0.91800 0.93677 0.91799 1.19652 1.00430 0.95190 1.37571 0.90737 1.26627 0.98485 1.00725 0.91999 1.69891 1.17008 1.35494 1.23714 0.85255 0.78080 0.77900 0.79079 1.18078 1.19275 1.19294 1.21091 0.98863 0.90120 1.04260 1.17894 0.90012 0.91938 1.08434 1.18227 0.95309 0.93384 0.92348 1.21154 0.98589 0.97147 0.99464 1.17647 0.94541 0.96043 0.86218 1.91453 1.72770 1.93220 1.55033 1.21264 1.01400 1.00573 0.91808 1.21269 0.96169 0.95626 0.99710 1.21997 1.01756 0.98029 0.98162 1.86230 1.55964 1.32993 1.12582 1.23867 1.06938 0.99174 1.01691 0.92959 0.93611 0.86912 0.85188 0.87703 0.90567 0.87731 0.86522 0.81139 0.81407 0.88803 0.88431 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.91 16 2 O -0.32 -12.38 8.75 -89.23 -0.78 -13.16 16 3 C 0.04 1.91 5.89 23.02 0.14 2.04 16 4 C -0.17 -7.65 8.95 22.06 0.20 -7.45 16 5 C -0.19 -9.43 9.72 22.50 0.22 -9.21 16 6 C 0.05 2.80 5.56 -21.31 -0.12 2.68 16 7 C -0.50 -27.28 9.04 23.40 0.21 -27.07 16 8 H 0.07 3.94 7.90 -2.91 -0.02 3.91 16 9 C 0.03 1.80 5.14 85.22 0.44 2.24 16 10 N -0.83 -44.98 10.96 21.81 0.24 -44.74 16 11 Si 0.98 39.57 29.59 68.60 2.03 41.60 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 14 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 15 C -0.12 -6.66 8.36 22.94 0.19 -6.47 16 16 C -0.08 -3.91 4.61 -19.99 -0.09 -4.00 16 17 C 0.01 0.55 4.95 -19.92 -0.10 0.45 16 18 C -0.14 -5.87 9.71 22.52 0.22 -5.65 16 19 C 0.08 2.65 7.29 22.35 0.16 2.81 16 20 F -0.15 -4.93 17.26 44.97 0.78 -4.16 16 21 C -0.13 -3.50 10.01 22.34 0.22 -3.28 16 22 C -0.10 -2.78 9.36 22.38 0.21 -2.58 16 23 C -0.09 -3.03 5.89 22.84 0.13 -2.89 16 24 S -0.12 -3.90 19.94 -56.49 -1.13 -5.02 16 25 C -0.15 -2.68 9.15 113.37 1.04 -1.64 16 26 H 0.05 1.37 7.65 -2.38 -0.02 1.36 16 27 H 0.05 1.23 7.65 -2.39 -0.02 1.21 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.13 4.73 6.26 -2.91 -0.02 4.71 16 30 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 32 H 0.10 6.02 6.19 -2.91 -0.02 6.00 16 33 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 34 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.17 3.08 5.88 -2.91 -0.02 3.06 16 36 H 0.09 1.45 7.74 -2.39 -0.02 1.43 16 37 H 0.10 1.44 7.76 -2.39 -0.02 1.43 16 38 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.39 337.02 6.41 -58.98 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.09 Total: 24.61 kcal Atomic # 6 Polarization: -62.28 SS G_CDS: 4.18 Total: -58.10 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.24 Total: -44.74 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.78 Total: -13.16 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.78 Total: -4.16 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.13 Total: -5.02 kcal Total: -65.39 6.41 -58.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205968588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.271 kcal (2) G-P(sol) polarization free energy of solvation -65.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds