Wall clock time and date at job start Tue Mar 31 2020 12:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35610 * 116.99826 * 2 1 4 4 C 1.38520 * 120.08122 * 359.97438 * 3 2 1 5 5 C 1.38020 * 120.31276 * 179.72703 * 4 3 2 6 6 C 1.39990 * 120.46453 * 359.97438 * 5 4 3 7 7 C 1.48267 * 119.92105 * 180.02562 * 6 5 4 8 8 C 1.39298 * 120.15139 * 129.73184 * 7 6 5 9 9 C 1.38207 * 119.92926 * 179.69578 * 8 7 6 10 10 F 1.35100 * 119.87564 * 180.29412 * 9 8 7 11 11 C 1.38609 * 120.24000 * 0.59508 * 9 8 7 12 12 C 1.38121 * 120.31330 * 359.68288 * 11 9 8 13 13 C 1.38815 * 120.06052 * 0.02562 * 12 11 9 14 14 S 1.76209 * 120.11883 * 179.97438 * 13 12 11 15 15 C 1.81399 * 102.99907 * 0.02562 * 14 13 12 16 16 C 1.38655 * 120.14984 * 0.02562 * 6 5 4 17 17 C 1.40508 * 119.68413 * 359.95487 * 16 6 5 18 18 C 1.41183 * 120.22190 * 180.02562 * 17 16 6 19 19 H 1.08005 * 120.00106 * 154.45503 * 18 17 16 20 20 C 1.39898 * 120.00320 * 334.45544 * 18 17 16 21 21 N 1.30884 * 119.99733 * 343.17266 * 20 18 17 22 22 Si 1.86793 * 119.99980 * 163.17079 * 20 18 17 23 23 H 1.48499 * 109.47520 * 59.99903 * 22 20 18 24 24 H 1.48499 * 109.47028 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47067 * 300.00017 * 22 20 18 26 26 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47073 * 300.00105 * 1 2 3 28 28 H 1.08995 * 109.47231 * 59.99885 * 1 2 3 29 29 H 1.08007 * 119.84222 * 359.75304 * 4 3 2 30 30 H 1.08002 * 119.76420 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.03311 * 359.97061 * 8 7 6 32 32 H 1.07995 * 119.84614 * 179.69437 * 11 9 8 33 33 H 1.07999 * 119.97061 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.46908 * 179.97438 * 15 14 13 35 35 H 1.09004 * 109.47424 * 299.99980 * 15 14 13 36 36 H 1.09005 * 109.47016 * 59.99546 * 15 14 13 37 37 H 1.07997 * 120.15719 * 179.97438 * 16 6 5 38 38 H 0.96997 * 119.99554 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3711 -0.0005 5 6 1.9134 3.6034 0.0051 6 6 3.3103 3.6937 0.0120 7 6 3.9655 5.0237 0.0187 8 6 4.9609 5.3087 0.9505 9 6 5.5729 6.5479 0.9485 10 9 6.5424 6.8211 1.8489 11 6 5.1914 7.5134 0.0301 12 6 4.2015 7.2435 -0.8946 13 6 3.5825 6.0011 -0.9079 14 16 2.3190 5.6554 -2.0864 15 6 2.2029 7.2027 -3.0261 16 6 4.0826 2.5421 0.0127 17 6 3.4564 1.2843 0.0074 18 6 4.2317 0.1044 0.0085 19 1 3.8212 -0.8111 0.4082 20 6 5.5318 0.1211 -0.5080 21 7 5.9171 1.1063 -1.2787 22 14 6.7176 -1.2626 -0.0977 23 1 6.1581 -2.5523 -0.5761 24 1 8.0212 -1.0109 -0.7630 25 1 6.9165 -1.3244 1.3727 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2133 2.3131 -0.0050 30 1 1.3178 4.5043 0.0051 31 1 5.2572 4.5606 1.6709 32 1 5.6704 8.4813 0.0374 33 1 3.9082 8.0001 -1.6073 34 1 1.4389 7.1031 -3.7971 35 1 1.9363 8.0175 -2.3529 36 1 3.1643 7.4172 -3.4931 37 1 5.1604 2.6116 0.0176 38 1 6.8183 1.1177 -1.6371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205968891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:49 Heat of formation + Delta-G solvation = -41.202472 kcal Electronic energy + Delta-G solvation = -23615.220395 eV Core-core repulsion = 20042.254811 eV Total energy + Delta-G solvation = -3572.965584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.61489 -39.06858 -38.29970 -36.05652 -33.77123 -31.62761 -30.63886 -29.81139 -28.64456 -27.89623 -26.48378 -25.15946 -22.73219 -22.57587 -20.92044 -19.99694 -17.78448 -17.14186 -16.83271 -16.40624 -16.08005 -15.36194 -15.23068 -14.71224 -14.66880 -14.50682 -14.39300 -13.79913 -13.66304 -13.27103 -13.06631 -12.77759 -12.71393 -12.65197 -12.07528 -11.80967 -11.70839 -11.55899 -11.24964 -11.14470 -10.86234 -10.84862 -10.49070 -10.14854 -9.91708 -9.72519 -9.49919 -9.22285 -9.16929 -8.70653 -7.52767 -7.16340 -6.79598 -6.64679 -4.25532 1.27931 1.41178 1.81233 2.67133 2.76236 2.89896 3.10498 3.13478 3.21133 3.82796 3.97529 4.46751 4.49156 4.59813 4.96133 5.08344 5.12901 5.14339 5.37882 5.53969 5.55670 5.71711 5.74466 5.81803 5.95583 5.98703 6.09507 6.11411 6.29758 6.35026 6.38806 6.59853 6.81018 7.06704 7.09450 7.25644 7.30954 7.63546 7.65782 7.91379 8.13277 8.34342 8.66059 8.82733 9.02079 10.22288 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010537 B = 0.005300 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.730171 B = 5281.591344 C = 6883.091242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.025 3.975 4 C -0.178 4.178 5 C -0.175 4.175 6 C -0.083 4.083 7 C 0.046 3.954 8 C -0.132 4.132 9 C 0.091 3.909 10 F -0.145 7.145 11 C -0.154 4.154 12 C -0.108 4.108 13 C -0.100 4.100 14 S -0.060 6.060 15 C -0.174 4.174 16 C -0.114 4.114 17 C 0.094 3.906 18 C -0.446 4.446 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 9.559 -0.646 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.019 4.019 4 C -0.197 4.197 5 C -0.196 4.196 6 C -0.084 4.084 7 C 0.041 3.959 8 C -0.153 4.153 9 C 0.070 3.930 10 F -0.123 7.123 11 C -0.174 4.174 12 C -0.132 4.132 13 C -0.213 4.213 14 S 0.184 5.816 15 C -0.343 4.343 16 C -0.134 4.134 17 C 0.091 3.909 18 C -0.475 4.475 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.421 5.421 22 Si 0.733 3.267 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.564 8.504 -1.075 9.711 hybrid contribution 1.310 0.895 0.349 1.625 sum -3.254 9.399 -0.726 9.973 Atomic orbital electron populations 1.22751 0.81632 1.01797 1.00024 1.85965 1.18319 1.28281 1.89947 1.19371 0.92382 0.82658 1.07510 1.20511 0.97513 0.92531 1.09116 1.20097 0.92575 0.95756 1.11141 1.18268 0.93040 0.89987 1.07125 1.18497 0.93070 0.92939 0.91397 1.21241 0.97551 0.95653 1.00815 1.17571 0.89881 0.94962 0.90609 1.91464 1.60759 1.94261 1.65852 1.20827 1.00261 0.99351 0.97004 1.20825 0.97232 0.95591 0.99594 1.21914 1.02082 0.96550 1.00769 1.86343 1.43303 1.17793 1.34122 1.23846 1.05675 1.01184 1.03570 1.21156 0.99347 0.89360 1.03555 1.16930 0.87318 0.93801 0.92829 1.19358 0.96850 0.96603 1.34696 0.89936 1.25878 0.98782 0.96959 0.92768 1.69822 1.19268 1.30670 1.22387 0.86356 0.78942 0.81534 0.79865 1.19004 1.20425 1.18858 0.90013 0.94154 0.94021 0.88245 0.88009 0.84157 0.85182 0.85435 0.87933 0.90393 0.90366 0.85364 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.07 9.77 -18.53 -0.18 -7.25 16 3 C 0.03 0.62 6.72 -38.28 -0.26 0.36 16 4 C -0.18 -3.88 9.01 -39.56 -0.36 -4.23 16 5 C -0.17 -3.77 8.07 -39.01 -0.31 -4.08 16 6 C -0.08 -1.87 5.06 -104.96 -0.53 -2.40 16 7 C 0.05 0.92 5.48 -104.71 -0.57 0.35 16 8 C -0.13 -2.44 9.47 -39.20 -0.37 -2.81 16 9 C 0.09 1.51 7.29 -39.46 -0.29 1.23 16 10 F -0.14 -2.35 17.26 2.25 0.04 -2.31 16 11 C -0.15 -2.22 10.01 -39.49 -0.40 -2.62 16 12 C -0.11 -1.58 9.36 -39.41 -0.37 -1.95 16 13 C -0.10 -1.75 6.09 -38.70 -0.24 -1.99 16 14 S -0.06 -0.98 19.31 -107.50 -2.08 -3.06 16 15 C -0.17 -1.92 9.15 101.05 0.92 -0.99 16 16 C -0.11 -2.87 8.12 -38.57 -0.31 -3.19 16 17 C 0.09 2.47 5.57 -106.73 -0.59 1.88 16 18 C -0.45 -11.85 8.71 -37.84 -0.33 -12.18 16 19 H 0.08 2.18 7.65 -52.48 -0.40 1.78 16 20 C 0.07 1.84 5.15 -17.33 -0.09 1.75 16 21 N -0.80 -20.48 10.96 55.55 0.61 -19.87 16 22 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 29 H 0.10 1.89 6.27 -52.48 -0.33 1.56 16 30 H 0.10 2.02 7.02 -52.49 -0.37 1.65 16 31 H 0.14 2.57 8.04 -52.49 -0.42 2.15 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.48 5.88 -52.49 -0.31 1.17 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.75 7.75 -51.92 -0.40 0.35 16 36 H 0.08 0.80 7.75 -51.92 -0.40 0.40 16 37 H 0.13 3.35 6.17 -52.49 -0.32 3.02 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -28.24 335.76 -8.84 -37.08 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.16 Total: 5.79 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -3.10 Total: -29.32 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.61 Total: -19.87 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.18 Total: -7.25 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.08 Total: -3.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.24 -8.84 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205968891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.120 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds