Wall clock time and date at job start Tue Mar 31 2020 12:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35878 * 117.00314 * 2 1 4 4 C 1.39546 * 119.76673 * 0.27460 * 3 2 1 5 5 C 1.37817 * 120.63928 * 180.27912 * 4 3 2 6 6 C 1.39339 * 120.15312 * 359.44391 * 5 4 3 7 7 C 1.47579 * 120.23855 * 180.29791 * 6 5 4 8 8 C 1.39697 * 120.19618 * 64.99855 * 7 6 5 9 9 C 1.37997 * 119.90748 * 180.02562 * 8 7 6 10 10 F 1.35103 * 119.85258 * 179.97438 * 9 8 7 11 11 C 1.38812 * 120.30133 * 0.02562 * 9 8 7 12 12 C 1.38065 * 120.39730 * 0.02562 * 11 9 8 13 13 C 1.38861 * 120.08625 * 359.71773 * 12 11 9 14 14 S 1.76202 * 120.15276 * 180.30716 * 13 12 11 15 15 C 1.81397 * 102.99812 * 0.24682 * 14 13 12 16 16 C 1.41999 * 119.53106 * 0.27986 * 6 5 4 17 17 C 1.40805 * 120.31428 * 180.02562 * 16 6 5 18 18 H 1.08001 * 120.00000 * 23.42510 * 17 16 6 19 19 C 1.39979 * 120.00338 * 203.42540 * 17 16 6 20 20 N 1.30829 * 119.99903 * 19.06352 * 19 17 16 21 21 Si 1.86794 * 120.00309 * 199.06168 * 19 17 16 22 22 H 1.48505 * 109.47236 * 94.68210 * 21 19 17 23 23 H 1.48501 * 109.47363 * 214.67680 * 21 19 17 24 24 H 1.48494 * 109.47106 * 334.68110 * 21 19 17 25 25 C 1.37851 * 119.76203 * 179.97438 * 3 2 1 26 26 H 1.09006 * 109.46736 * 59.99293 * 1 2 3 27 27 H 1.08991 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47052 * 300.00431 * 1 2 3 29 29 H 1.07997 * 119.67670 * 0.02571 * 4 3 2 30 30 H 1.08000 * 119.92226 * 179.72502 * 5 4 3 31 31 H 1.08004 * 120.04878 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.80166 * 180.02562 * 11 9 8 33 33 H 1.07995 * 119.95955 * 179.97438 * 12 11 9 34 34 H 1.09006 * 109.47248 * 180.02562 * 15 14 13 35 35 H 1.08996 * 109.47909 * 300.00475 * 15 14 13 36 36 H 1.09007 * 109.46872 * 60.00284 * 15 14 13 37 37 H 0.96995 * 120.00110 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.08820 * 0.03260 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2812 2.3779 0.0058 5 6 1.8882 3.6152 0.0001 6 6 3.2781 3.7130 0.0002 7 6 3.9300 5.0370 0.0007 8 6 3.7826 5.8923 1.0954 9 6 4.3943 7.1293 1.0894 10 9 4.2506 7.9558 2.1484 11 6 5.1559 7.5287 -0.0003 12 6 5.3091 6.6938 -1.0892 13 6 4.7052 5.4434 -1.0981 14 16 4.9062 4.3733 -2.4834 15 6 5.9652 5.3394 -3.5950 16 6 4.0630 2.5297 0.0001 17 6 5.4688 2.6093 0.0007 18 1 5.9593 3.4965 0.3730 19 6 6.2307 1.5385 -0.4813 20 7 5.6806 0.6422 -1.2595 21 14 8.0330 1.3893 -0.0135 22 1 8.1658 0.4991 1.1677 23 1 8.7944 0.8168 -1.1527 24 1 8.5716 2.7332 0.3164 25 6 3.4229 1.2770 0.0005 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2034 2.3110 0.0107 30 1 1.2851 4.5111 0.0002 31 1 3.1899 5.5863 1.9448 32 1 5.6315 8.4984 0.0037 33 1 5.9029 7.0118 -1.9333 34 1 6.1588 4.7662 -4.5018 35 1 5.4641 6.2718 -3.8551 36 1 6.9088 5.5609 -3.0964 37 1 6.2084 -0.1000 -1.5932 38 1 4.0087 0.3696 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205975345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:53 Heat of formation + Delta-G solvation = -40.670777 kcal Electronic energy + Delta-G solvation = -24044.150493 eV Core-core repulsion = 20471.207965 eV Total energy + Delta-G solvation = -3572.942528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.43367 -38.96226 -38.17552 -36.18455 -33.64281 -31.44826 -30.37947 -29.73595 -28.41758 -28.11773 -26.26815 -25.23356 -22.59808 -22.19811 -20.97937 -19.89546 -17.75803 -17.10992 -16.68451 -16.15219 -15.84032 -15.23173 -15.06682 -14.81857 -14.70994 -14.45401 -14.24047 -13.68424 -13.37488 -13.18154 -12.98870 -12.83849 -12.49376 -12.42441 -11.83693 -11.68788 -11.63383 -11.40343 -11.24489 -11.15211 -11.09981 -10.67301 -10.47197 -10.07202 -9.87173 -9.61351 -9.34105 -9.17874 -8.85237 -8.41134 -7.55133 -7.00519 -6.78638 -6.40233 -4.41575 1.58668 1.69852 2.22659 2.72517 2.90735 3.05026 3.08835 3.19044 3.20627 3.88475 4.05728 4.31020 4.55613 4.73915 5.21764 5.29066 5.39923 5.43449 5.56420 5.64335 5.68739 5.74643 5.82518 5.90857 5.99080 6.08615 6.24808 6.33964 6.40499 6.58002 6.68203 6.81617 6.90362 7.01990 7.22313 7.34812 7.38522 7.66675 7.75841 7.94658 7.99471 8.32889 8.70858 8.78721 8.87618 10.06859 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.006580 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.568004 B = 4254.468685 C = 5626.355979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.137 3.863 4 C -0.323 4.323 5 C -0.028 4.028 6 C -0.227 4.227 7 C 0.071 3.929 8 C -0.142 4.142 9 C 0.079 3.921 10 F -0.151 7.151 11 C -0.158 4.158 12 C -0.117 4.117 13 C -0.090 4.090 14 S -0.015 6.015 15 C -0.183 4.183 16 C 0.164 3.836 17 C -0.421 4.421 18 H 0.081 0.919 19 C 0.086 3.914 20 N -0.763 5.763 21 Si 0.898 3.102 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.197 4.197 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.283 0.717 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 5.670 -1.760 6.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.093 3.907 4 C -0.342 4.342 5 C -0.046 4.046 6 C -0.230 4.230 7 C 0.065 3.935 8 C -0.163 4.163 9 C 0.057 3.943 10 F -0.130 7.130 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.204 4.204 14 S 0.232 5.768 15 C -0.352 4.352 16 C 0.160 3.840 17 C -0.450 4.450 18 H 0.099 0.901 19 C -0.135 4.135 20 N -0.386 5.386 21 Si 0.723 3.277 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.217 4.217 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.180 4.141 -2.268 4.866 hybrid contribution 1.056 1.573 0.564 1.977 sum -0.124 5.713 -1.703 5.963 Atomic orbital electron populations 1.22752 0.80784 1.01815 1.00526 1.86003 1.19502 1.29177 1.89729 1.18996 0.92458 0.82414 0.96827 1.20281 0.97279 0.92406 1.24275 1.20250 0.92949 0.95282 0.96161 1.18286 0.92187 0.90270 1.22208 1.18160 0.92706 0.92911 0.89701 1.21264 1.02547 0.92709 0.99746 1.17539 1.01904 0.89597 0.85280 1.91431 1.94689 1.71550 1.55308 1.20763 1.02368 1.00914 0.93772 1.20815 1.01317 0.93386 0.98631 1.22250 1.01935 0.96664 0.99564 1.86758 1.60804 1.19833 1.09402 1.23865 1.03508 1.04284 1.03505 1.17062 0.92544 0.88573 0.85823 1.19419 0.90869 1.00925 1.33739 0.90135 1.25857 1.00829 0.94418 0.92434 1.69844 1.38504 1.09881 1.20369 0.86433 0.82150 0.79917 0.79248 1.19209 1.20072 1.18355 1.20498 0.89361 0.99030 1.12794 0.93647 0.89971 0.93719 0.88641 0.89055 0.85006 0.85754 0.85869 0.88267 0.91021 0.90543 0.90589 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.14 10.48 -19.36 -0.20 -7.34 16 3 C 0.14 3.24 6.67 -39.24 -0.26 2.98 16 4 C -0.32 -7.06 9.02 -39.25 -0.35 -7.41 16 5 C -0.03 -0.61 9.71 -39.33 -0.38 -0.99 16 6 C -0.23 -5.21 4.66 -104.24 -0.49 -5.70 16 7 C 0.07 1.49 4.38 -104.70 -0.46 1.03 16 8 C -0.14 -2.70 9.71 -39.13 -0.38 -3.08 16 9 C 0.08 1.39 7.29 -39.46 -0.29 1.10 16 10 F -0.15 -2.57 17.26 2.25 0.04 -2.53 16 11 C -0.16 -2.53 10.01 -39.43 -0.39 -2.92 16 12 C -0.12 -1.94 9.36 -39.41 -0.37 -2.31 16 13 C -0.09 -1.76 5.49 -38.51 -0.21 -1.98 16 14 S -0.02 -0.29 19.46 -107.50 -2.09 -2.39 16 15 C -0.18 -2.58 9.15 101.05 0.92 -1.65 16 16 C 0.16 4.06 5.02 -106.57 -0.53 3.53 16 17 C -0.42 -10.27 6.55 -37.96 -0.25 -10.51 16 18 H 0.08 1.99 7.01 -52.49 -0.37 1.62 16 19 C 0.09 2.02 5.12 -17.33 -0.09 1.93 16 20 N -0.76 -18.37 10.96 55.55 0.61 -17.77 16 21 Si 0.90 17.92 29.60 -169.99 -5.03 12.89 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.20 -5.01 8.62 -38.80 -0.33 -5.35 16 26 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.66 7.63 -51.93 -0.40 0.27 16 29 H 0.10 1.85 6.25 -52.49 -0.33 1.52 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 32 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.12 1.72 5.88 -52.49 -0.31 1.41 16 34 H 0.10 1.26 8.14 -51.92 -0.42 0.83 16 35 H 0.07 0.88 7.74 -51.93 -0.40 0.48 16 36 H 0.08 1.02 7.76 -51.92 -0.40 0.61 16 37 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 38 H 0.13 3.41 6.12 -52.48 -0.32 3.08 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -26.64 334.44 -8.69 -35.32 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.17 Total: 6.53 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -2.87 Total: -29.76 kcal Atomic # 7 Polarization: -18.37 SS G_CDS: 0.61 Total: -17.77 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.20 Total: -7.34 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.09 Total: -2.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.64 -8.69 -35.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205975345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.346 kcal (2) G-P(sol) polarization free energy of solvation -26.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds