Wall clock time and date at job start Tue Mar 31 2020 12:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35878 * 117.00314 * 2 1 4 4 C 1.39546 * 119.76673 * 0.27460 * 3 2 1 5 5 C 1.37817 * 120.63928 * 180.27912 * 4 3 2 6 6 C 1.39339 * 120.15312 * 359.44391 * 5 4 3 7 7 C 1.47579 * 120.23855 * 180.29791 * 6 5 4 8 8 C 1.39697 * 120.19618 * 64.99855 * 7 6 5 9 9 C 1.37997 * 119.90748 * 180.02562 * 8 7 6 10 10 F 1.35103 * 119.85258 * 179.97438 * 9 8 7 11 11 C 1.38812 * 120.30133 * 0.02562 * 9 8 7 12 12 C 1.38065 * 120.39730 * 0.02562 * 11 9 8 13 13 C 1.38861 * 120.08625 * 359.71773 * 12 11 9 14 14 S 1.76202 * 120.15276 * 180.30716 * 13 12 11 15 15 C 1.81397 * 102.99812 * 0.24682 * 14 13 12 16 16 C 1.41999 * 119.53106 * 0.27986 * 6 5 4 17 17 C 1.40805 * 120.31428 * 180.02562 * 16 6 5 18 18 H 1.08001 * 120.00000 * 23.42510 * 17 16 6 19 19 C 1.39979 * 120.00338 * 203.42540 * 17 16 6 20 20 N 1.30829 * 119.99903 * 19.06352 * 19 17 16 21 21 Si 1.86794 * 120.00309 * 199.06168 * 19 17 16 22 22 H 1.48505 * 109.47236 * 94.68210 * 21 19 17 23 23 H 1.48501 * 109.47363 * 214.67680 * 21 19 17 24 24 H 1.48494 * 109.47106 * 334.68110 * 21 19 17 25 25 C 1.37851 * 119.76203 * 179.97438 * 3 2 1 26 26 H 1.09006 * 109.46736 * 59.99293 * 1 2 3 27 27 H 1.08991 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47052 * 300.00431 * 1 2 3 29 29 H 1.07997 * 119.67670 * 0.02571 * 4 3 2 30 30 H 1.08000 * 119.92226 * 179.72502 * 5 4 3 31 31 H 1.08004 * 120.04878 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.80166 * 180.02562 * 11 9 8 33 33 H 1.07995 * 119.95955 * 179.97438 * 12 11 9 34 34 H 1.09006 * 109.47248 * 180.02562 * 15 14 13 35 35 H 1.08996 * 109.47909 * 300.00475 * 15 14 13 36 36 H 1.09007 * 109.46872 * 60.00284 * 15 14 13 37 37 H 0.96995 * 120.00110 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.08820 * 0.03260 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2812 2.3779 0.0058 5 6 1.8882 3.6152 0.0001 6 6 3.2781 3.7130 0.0002 7 6 3.9300 5.0370 0.0007 8 6 3.7826 5.8923 1.0954 9 6 4.3943 7.1293 1.0894 10 9 4.2506 7.9558 2.1484 11 6 5.1559 7.5287 -0.0003 12 6 5.3091 6.6938 -1.0892 13 6 4.7052 5.4434 -1.0981 14 16 4.9062 4.3733 -2.4834 15 6 5.9652 5.3394 -3.5950 16 6 4.0630 2.5297 0.0001 17 6 5.4688 2.6093 0.0007 18 1 5.9593 3.4965 0.3730 19 6 6.2307 1.5385 -0.4813 20 7 5.6806 0.6422 -1.2595 21 14 8.0330 1.3893 -0.0135 22 1 8.1658 0.4991 1.1677 23 1 8.7944 0.8168 -1.1527 24 1 8.5716 2.7332 0.3164 25 6 3.4229 1.2770 0.0005 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2034 2.3110 0.0107 30 1 1.2851 4.5111 0.0002 31 1 3.1899 5.5863 1.9448 32 1 5.6315 8.4984 0.0037 33 1 5.9029 7.0118 -1.9333 34 1 6.1588 4.7662 -4.5018 35 1 5.4641 6.2718 -3.8551 36 1 6.9088 5.5609 -3.0964 37 1 6.2084 -0.1000 -1.5932 38 1 4.0087 0.3696 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205975345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:52 Heat of formation + Delta-G solvation = -52.200631 kcal Electronic energy + Delta-G solvation = -24044.650465 eV Core-core repulsion = 20471.207965 eV Total energy + Delta-G solvation = -3573.442500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.79096 -40.59294 -39.66636 -37.81872 -35.38683 -32.94846 -31.82878 -31.43301 -29.80866 -29.44102 -27.75179 -26.94824 -24.09727 -23.62494 -22.70652 -21.50567 -19.47509 -18.53024 -18.11045 -17.89076 -17.24664 -16.82876 -16.49024 -16.33475 -16.29843 -15.96480 -15.59898 -15.10172 -14.82700 -14.62636 -14.40867 -14.29985 -14.08904 -13.62572 -13.44740 -13.13881 -13.06351 -12.94491 -12.82086 -12.67106 -12.58143 -12.29073 -11.99752 -11.68961 -11.51470 -11.30791 -10.94739 -10.66085 -10.28478 -9.84495 -9.33754 -8.74397 -8.49780 -7.90859 -6.22478 0.16961 0.29188 0.87171 1.02717 1.17125 1.40531 1.51091 1.55256 1.88320 2.22741 2.62617 2.76832 2.83409 3.36753 3.72409 3.91909 4.03351 4.24801 4.35457 4.36505 4.37139 4.46325 4.47890 4.52656 4.60653 4.76350 4.85829 4.91163 5.01534 5.10746 5.17230 5.22034 5.24591 5.35389 5.53717 5.61570 5.89224 5.96527 6.03567 6.16184 6.22043 6.54145 6.96080 6.99878 7.11081 8.35508 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.006580 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.568004 B = 4254.468685 C = 5626.355979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.132 3.868 4 C -0.324 4.324 5 C -0.038 4.038 6 C -0.226 4.226 7 C 0.041 3.959 8 C -0.150 4.150 9 C 0.075 3.925 10 F -0.147 7.147 11 C -0.142 4.142 12 C -0.111 4.111 13 C -0.093 4.093 14 S -0.099 6.099 15 C -0.161 4.161 16 C 0.147 3.853 17 C -0.433 4.433 18 H 0.069 0.931 19 C 0.056 3.944 20 N -0.792 5.792 21 Si 0.956 3.044 22 H -0.268 1.268 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.233 4.233 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.287 0.713 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 7.867 -2.246 8.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.087 3.913 4 C -0.344 4.344 5 C -0.056 4.056 6 C -0.228 4.228 7 C 0.034 3.966 8 C -0.171 4.171 9 C 0.053 3.947 10 F -0.126 7.126 11 C -0.162 4.162 12 C -0.136 4.136 13 C -0.206 4.206 14 S 0.147 5.853 15 C -0.329 4.329 16 C 0.143 3.857 17 C -0.462 4.462 18 H 0.087 0.913 19 C -0.163 4.163 20 N -0.416 5.416 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.253 4.253 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.638 6.336 -2.746 6.935 hybrid contribution 0.779 0.977 0.685 1.425 sum 0.141 7.313 -2.060 7.599 Atomic orbital electron populations 1.23114 0.77769 1.04392 1.01380 1.85964 1.22661 1.28526 1.89528 1.19110 0.92275 0.83686 0.96216 1.20550 0.98542 0.91796 1.23511 1.20577 0.93070 0.96159 0.95797 1.18540 0.92673 0.90975 1.20610 1.18169 0.94555 0.92577 0.91250 1.21262 1.03058 0.93406 0.99345 1.17603 1.02009 0.89125 0.85952 1.91442 1.94682 1.71215 1.55254 1.21162 1.00686 1.02027 0.92336 1.21186 1.00580 0.92032 0.99763 1.22263 1.02061 0.97506 0.98797 1.86978 1.62967 1.23435 1.11911 1.23865 1.02545 1.04354 1.02172 1.17291 0.93200 0.89051 0.86145 1.19339 0.90973 1.01090 1.34756 0.91251 1.26466 1.04131 0.93825 0.91923 1.69904 1.39940 1.10505 1.21254 0.85565 0.77898 0.79672 0.79042 1.19267 1.18981 1.18291 1.20462 0.90427 0.98642 1.15819 0.92926 0.86692 0.92561 0.86014 0.86969 0.85150 0.82008 0.82680 0.86915 0.88657 0.89364 0.90178 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.80 113.37 1.11 1.97 16 2 O -0.35 -15.50 10.48 -92.18 -0.97 -16.46 16 3 C 0.13 6.41 6.67 22.49 0.15 6.56 16 4 C -0.32 -14.25 9.02 22.49 0.20 -14.05 16 5 C -0.04 -1.66 9.71 22.44 0.22 -1.45 16 6 C -0.23 -10.64 4.66 -19.62 -0.09 -10.73 16 7 C 0.04 1.70 4.38 -19.91 -0.09 1.61 16 8 C -0.15 -5.65 9.71 22.57 0.22 -5.43 16 9 C 0.08 2.48 7.29 22.35 0.16 2.65 16 10 F -0.15 -4.67 17.26 44.97 0.78 -3.89 16 11 C -0.14 -4.03 10.01 22.37 0.22 -3.81 16 12 C -0.11 -3.35 9.36 22.38 0.21 -3.14 16 13 C -0.09 -3.53 5.49 22.97 0.13 -3.41 16 14 S -0.10 -3.88 19.46 -56.49 -1.10 -4.98 16 15 C -0.16 -4.10 9.15 113.37 1.04 -3.06 16 16 C 0.15 7.60 5.02 -21.12 -0.11 7.49 16 17 C -0.43 -21.94 6.55 23.32 0.15 -21.79 16 18 H 0.07 3.55 7.01 -2.91 -0.02 3.53 16 19 C 0.06 2.68 5.12 85.26 0.44 3.11 16 20 N -0.79 -39.86 10.96 21.83 0.24 -39.62 16 21 Si 0.96 37.34 29.60 68.60 2.03 39.37 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 C -0.23 -12.53 8.62 22.77 0.20 -12.33 16 26 H 0.05 1.53 7.66 -2.38 -0.02 1.51 16 27 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 28 H 0.06 1.59 7.63 -2.39 -0.02 1.57 16 29 H 0.12 4.56 6.25 -2.91 -0.02 4.54 16 30 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.16 3.63 5.88 -2.91 -0.02 3.61 16 34 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 1.98 7.74 -2.39 -0.02 1.96 16 36 H 0.09 2.05 7.76 -2.39 -0.02 2.03 16 37 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 38 H 0.10 5.93 6.12 -2.91 -0.02 5.92 16 Total: -1.00 -60.80 334.44 6.24 -54.56 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.10 Total: 26.82 kcal Atomic # 6 Polarization: -59.96 SS G_CDS: 4.16 Total: -55.80 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.24 Total: -39.62 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.97 Total: -16.46 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.89 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.10 Total: -4.98 kcal Total: -60.80 6.24 -54.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205975345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.361 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds