Wall clock time and date at job start Tue Mar 31 2020 12:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39744 * 119.99942 * 2 1 4 4 C 1.38791 * 120.10795 * 274.32927 * 3 2 1 5 5 C 1.38171 * 119.99557 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.20652 * 0.02562 * 5 4 3 7 7 C 1.38179 * 120.21624 * 359.97438 * 6 5 4 8 8 C 1.38725 * 120.00539 * 359.67970 * 7 6 5 9 9 O 1.35778 * 120.10245 * 180.29347 * 8 7 6 10 10 C 1.34804 * 117.00442 * 354.31771 * 9 8 7 11 11 H 1.07999 * 119.99357 * 5.05282 * 10 9 8 12 12 C 1.38616 * 119.99978 * 185.04805 * 10 9 8 13 13 N 1.31574 * 120.00262 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99768 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47230 * 89.99990 * 14 12 10 16 16 H 1.48496 * 109.47185 * 210.00267 * 14 12 10 17 17 H 1.48498 * 109.47107 * 330.00295 * 14 12 10 18 18 C 1.39967 * 120.00026 * 179.72239 * 2 1 3 19 19 C 1.38719 * 120.09169 * 264.96773 * 18 2 1 20 20 C 1.38333 * 119.98127 * 180.02562 * 19 18 2 21 21 Cl 1.73604 * 119.91043 * 180.02562 * 20 19 18 22 22 C 1.38365 * 120.17578 * 0.02562 * 20 19 18 23 23 C 1.38267 * 120.18854 * 359.97438 * 22 20 19 24 24 C 1.38661 * 120.01262 * 359.72281 * 23 22 20 25 25 N 1.40035 * 120.08780 * 180.29070 * 24 23 22 26 26 H 1.08999 * 109.47245 * 270.27467 * 1 2 3 27 27 H 1.08996 * 109.47105 * 30.27798 * 1 2 3 28 28 H 1.08996 * 109.47047 * 150.27543 * 1 2 3 29 29 H 1.08007 * 120.00487 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.90467 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.89293 * 179.97438 * 6 5 4 32 32 H 1.07993 * 119.99909 * 179.97438 * 7 6 5 33 33 H 0.97008 * 120.00086 * 179.97438 * 13 12 10 34 34 H 1.07993 * 120.00629 * 359.97438 * 19 18 2 35 35 H 1.07998 * 119.90776 * 180.02562 * 22 20 19 36 36 H 1.08003 * 119.99633 * 180.02562 * 23 22 20 37 37 H 0.96997 * 120.00471 * 185.20680 * 25 24 23 38 38 H 0.97002 * 120.00031 * 5.21549 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1637 1.2102 0.0000 4 6 2.4333 1.8585 -1.1972 5 6 3.1248 3.0547 -1.1946 6 6 3.5509 3.6098 -0.0010 7 6 3.2872 2.9718 1.1960 8 6 2.5874 1.7740 1.2042 9 8 2.3220 1.1484 2.3797 10 6 2.8662 1.6801 3.4925 11 1 3.4135 2.6094 3.4349 12 6 2.7232 1.0342 4.7106 13 7 2.0567 -0.0981 4.7806 14 14 3.4767 1.7713 6.2528 15 1 2.4939 2.6774 6.8996 16 1 3.8409 0.6827 7.1948 17 1 4.6944 2.5400 5.8900 18 6 2.1649 -1.2121 0.0059 19 6 2.6038 -1.7560 1.2041 20 6 3.2957 -2.9539 1.2072 21 17 3.8436 -3.6332 2.7079 22 6 3.5523 -3.6119 0.0174 23 6 3.1181 -3.0763 -1.1810 24 6 2.4184 -1.8792 -1.1927 25 7 1.9726 -1.3384 -2.4050 26 1 -0.3634 0.0049 1.0276 27 1 -0.3633 0.8874 -0.5181 28 1 -0.3633 -0.8924 -0.5095 29 1 2.1027 1.4280 -2.1310 30 1 3.3342 3.5577 -2.1271 31 1 4.0913 4.5448 -0.0048 32 1 3.6217 3.4080 2.1255 33 1 1.9570 -0.5504 5.6331 34 1 2.4061 -1.2440 2.1342 35 1 4.0925 -4.5471 0.0249 36 1 3.3197 -3.5928 -2.1079 37 1 1.5502 -0.4654 -2.4205 38 1 2.0861 -1.8369 -3.2293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:18 Heat of formation + Delta-G solvation = 40.033425 kcal Electronic energy + Delta-G solvation = -24586.255392 eV Core-core repulsion = 21034.688716 eV Total energy + Delta-G solvation = -3551.566676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.68575 -38.63883 -36.54136 -35.93386 -34.91473 -33.76401 -32.23184 -30.10777 -29.28137 -28.58624 -27.89815 -25.37089 -24.89102 -22.53157 -21.63629 -21.40221 -20.15148 -17.93924 -17.51861 -16.68207 -16.50982 -16.04282 -15.29076 -14.67716 -14.55648 -14.37751 -14.06807 -13.82295 -13.52941 -13.29073 -13.06785 -12.87947 -12.80284 -12.36573 -12.00063 -11.68527 -11.63233 -11.47509 -11.28793 -11.01063 -10.88322 -10.82783 -10.77166 -10.43817 -10.20827 -9.71236 -9.41365 -8.80826 -8.37115 -8.06687 -7.40515 -7.16968 -7.05619 -6.41600 -3.98734 1.73533 1.91865 2.14112 2.38076 2.87178 3.14550 3.16812 3.20512 3.96322 4.00159 4.15248 4.19760 4.55837 5.11035 5.25530 5.28313 5.47724 5.62894 5.72817 5.80061 5.87997 5.92353 6.00015 6.08184 6.26662 6.36669 6.40179 6.51861 6.61808 6.68260 6.76811 6.94298 7.12106 7.16046 7.27321 7.37547 7.40920 7.65677 7.69999 8.01968 8.03129 8.20695 8.53935 9.04636 9.74310 10.74895 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.007130 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.934192 B = 3925.989903 C = 6104.119557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.608 5.608 3 C 0.087 3.913 4 C -0.079 4.079 5 C -0.212 4.212 6 C -0.075 4.075 7 C -0.232 4.232 8 C 0.147 3.853 9 O -0.159 6.159 10 C -0.395 4.395 11 H 0.088 0.912 12 C 0.046 3.954 13 N -0.851 5.851 14 Si 0.934 3.066 15 H -0.275 1.275 16 H -0.278 1.278 17 H -0.269 1.269 18 C 0.115 3.885 19 C -0.054 4.054 20 C -0.084 4.084 21 Cl -0.084 7.084 22 C -0.075 4.075 23 C -0.197 4.197 24 C 0.210 3.790 25 N -0.873 5.873 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.270 0.730 34 H 0.165 0.835 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.399 0.601 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -2.885 -11.362 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.330 5.330 3 C -0.005 4.005 4 C -0.099 4.099 5 C -0.231 4.231 6 C -0.093 4.093 7 C -0.252 4.252 8 C 0.090 3.910 9 O -0.062 6.062 10 C -0.472 4.472 11 H 0.106 0.894 12 C -0.160 4.160 13 N -0.486 5.486 14 Si 0.760 3.240 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.194 1.194 18 C 0.019 3.981 19 C -0.075 4.075 20 C -0.113 4.113 21 Cl -0.055 7.055 22 C -0.095 4.095 23 C -0.220 4.220 24 C 0.103 3.897 25 N -0.413 5.413 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.182 0.818 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.229 0.771 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.134 -3.333 -10.930 11.428 hybrid contribution 0.451 0.602 0.694 1.023 sum 0.317 -2.731 -10.237 10.599 Atomic orbital electron populations 1.21350 0.80144 1.00024 1.00568 1.42366 1.02353 0.99372 1.88876 1.16523 1.05013 0.89273 0.89708 1.20871 0.98203 0.95133 0.95695 1.20448 1.07103 0.98412 0.97161 1.20762 0.97932 0.98302 0.92348 1.21127 1.07433 0.98025 0.98642 1.19927 0.92469 0.90950 0.87620 1.83986 1.62345 1.48731 1.11110 1.21283 1.34493 1.07621 0.83775 0.89429 1.25159 0.96904 0.95690 0.98197 1.69991 1.37466 1.14734 1.26365 0.85811 0.79199 0.78516 0.80519 1.20070 1.20291 1.19350 1.16760 1.02244 0.89442 0.89697 1.22000 0.92520 0.92293 1.00652 1.20552 1.06567 0.97555 0.86630 1.98332 1.88939 1.84809 1.33453 1.20675 0.99109 0.99236 0.90475 1.20220 1.06614 0.97471 0.97723 1.18283 0.92379 0.92425 0.86609 1.42453 1.69603 1.23482 1.05779 0.94157 0.92940 0.93293 0.87623 0.87696 0.87596 0.85550 0.92051 0.81783 0.85862 0.86031 0.77128 0.78141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.04 10.71 59.85 0.64 2.68 16 2 N -0.61 -11.50 1.76 -118.67 -0.21 -11.70 16 3 C 0.09 1.77 5.11 -83.56 -0.43 1.34 16 4 C -0.08 -1.38 9.88 -39.40 -0.39 -1.77 16 5 C -0.21 -3.58 10.04 -39.56 -0.40 -3.97 16 6 C -0.08 -1.36 10.04 -39.56 -0.40 -1.76 16 7 C -0.23 -4.98 9.16 -39.42 -0.36 -5.34 16 8 C 0.15 3.44 6.67 -38.91 -0.26 3.18 16 9 O -0.16 -4.27 8.14 0.03 0.00 -4.27 16 10 C -0.40 -10.67 9.49 30.87 0.29 -10.37 16 11 H 0.09 2.24 5.21 -52.49 -0.27 1.96 16 12 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 13 N -0.85 -23.75 13.67 55.48 0.76 -22.99 16 14 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 C 0.11 2.18 5.11 -83.50 -0.43 1.75 16 19 C -0.05 -1.14 9.66 -39.37 -0.38 -1.52 16 20 C -0.08 -1.58 6.32 -39.50 -0.25 -1.83 16 21 Cl -0.08 -1.58 28.95 -51.86 -1.50 -3.08 16 22 C -0.08 -1.18 9.82 -39.52 -0.39 -1.56 16 23 C -0.20 -2.82 9.89 -39.41 -0.39 -3.21 16 24 C 0.21 3.29 6.78 -83.49 -0.57 2.72 16 25 N -0.87 -10.63 9.08 32.55 0.30 -10.33 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.78 8.05 -51.93 -0.42 0.37 16 28 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 29 H 0.11 1.55 6.57 -52.48 -0.34 1.21 16 30 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.16 4.21 6.75 -52.49 -0.35 3.86 16 35 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.40 4.92 6.54 -40.82 -0.27 4.65 16 38 H 0.39 3.61 8.85 -40.82 -0.36 3.25 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -28.99 340.97 -8.32 -37.31 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -3.98 Total: 13.04 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.79 Total: -18.55 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.84 Total: -45.03 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: 0.00 Total: -4.27 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.99 -8.32 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.340 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds