Wall clock time and date at job start Tue Mar 31 2020 12:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39744 * 119.99942 * 2 1 4 4 C 1.38791 * 120.10795 * 274.32927 * 3 2 1 5 5 C 1.38171 * 119.99557 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.20652 * 0.02562 * 5 4 3 7 7 C 1.38179 * 120.21624 * 359.97438 * 6 5 4 8 8 C 1.38725 * 120.00539 * 359.67970 * 7 6 5 9 9 O 1.35778 * 120.10245 * 180.29347 * 8 7 6 10 10 C 1.34804 * 117.00442 * 354.31771 * 9 8 7 11 11 H 1.07999 * 119.99357 * 5.05282 * 10 9 8 12 12 C 1.38616 * 119.99978 * 185.04805 * 10 9 8 13 13 N 1.31574 * 120.00262 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99768 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47230 * 89.99990 * 14 12 10 16 16 H 1.48496 * 109.47185 * 210.00267 * 14 12 10 17 17 H 1.48498 * 109.47107 * 330.00295 * 14 12 10 18 18 C 1.39967 * 120.00026 * 179.72239 * 2 1 3 19 19 C 1.38719 * 120.09169 * 264.96773 * 18 2 1 20 20 C 1.38333 * 119.98127 * 180.02562 * 19 18 2 21 21 Cl 1.73604 * 119.91043 * 180.02562 * 20 19 18 22 22 C 1.38365 * 120.17578 * 0.02562 * 20 19 18 23 23 C 1.38267 * 120.18854 * 359.97438 * 22 20 19 24 24 C 1.38661 * 120.01262 * 359.72281 * 23 22 20 25 25 N 1.40035 * 120.08780 * 180.29070 * 24 23 22 26 26 H 1.08999 * 109.47245 * 270.27467 * 1 2 3 27 27 H 1.08996 * 109.47105 * 30.27798 * 1 2 3 28 28 H 1.08996 * 109.47047 * 150.27543 * 1 2 3 29 29 H 1.08007 * 120.00487 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.90467 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.89293 * 179.97438 * 6 5 4 32 32 H 1.07993 * 119.99909 * 179.97438 * 7 6 5 33 33 H 0.97008 * 120.00086 * 179.97438 * 13 12 10 34 34 H 1.07993 * 120.00629 * 359.97438 * 19 18 2 35 35 H 1.07998 * 119.90776 * 180.02562 * 22 20 19 36 36 H 1.08003 * 119.99633 * 180.02562 * 23 22 20 37 37 H 0.96997 * 120.00471 * 185.20680 * 25 24 23 38 38 H 0.97002 * 120.00031 * 5.21549 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1637 1.2102 0.0000 4 6 2.4333 1.8585 -1.1972 5 6 3.1248 3.0547 -1.1946 6 6 3.5509 3.6098 -0.0010 7 6 3.2872 2.9718 1.1960 8 6 2.5874 1.7740 1.2042 9 8 2.3220 1.1484 2.3797 10 6 2.8662 1.6801 3.4925 11 1 3.4135 2.6094 3.4349 12 6 2.7232 1.0342 4.7106 13 7 2.0567 -0.0981 4.7806 14 14 3.4767 1.7713 6.2528 15 1 2.4939 2.6774 6.8996 16 1 3.8409 0.6827 7.1948 17 1 4.6944 2.5400 5.8900 18 6 2.1649 -1.2121 0.0059 19 6 2.6038 -1.7560 1.2041 20 6 3.2957 -2.9539 1.2072 21 17 3.8436 -3.6332 2.7079 22 6 3.5523 -3.6119 0.0174 23 6 3.1181 -3.0763 -1.1810 24 6 2.4184 -1.8792 -1.1927 25 7 1.9726 -1.3384 -2.4050 26 1 -0.3634 0.0049 1.0276 27 1 -0.3633 0.8874 -0.5181 28 1 -0.3633 -0.8924 -0.5095 29 1 2.1027 1.4280 -2.1310 30 1 3.3342 3.5577 -2.1271 31 1 4.0913 4.5448 -0.0048 32 1 3.6217 3.4080 2.1255 33 1 1.9570 -0.5504 5.6331 34 1 2.4061 -1.2440 2.1342 35 1 4.0925 -4.5471 0.0249 36 1 3.3197 -3.5928 -2.1079 37 1 1.5502 -0.4654 -2.4205 38 1 2.0861 -1.8369 -3.2293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:18 Heat of formation + Delta-G solvation = 23.713614 kcal Electronic energy + Delta-G solvation = -24586.963072 eV Core-core repulsion = 21034.688716 eV Total energy + Delta-G solvation = -3552.274356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15210 -40.12350 -38.17759 -37.37276 -36.31850 -34.96173 -34.18114 -31.51621 -30.74758 -30.13469 -29.15568 -27.28399 -26.30565 -23.94524 -23.06982 -22.91138 -21.58427 -19.72258 -19.07430 -18.02216 -17.78753 -17.44347 -16.77217 -16.26929 -16.25815 -15.76567 -15.49179 -15.25320 -15.17317 -14.78555 -14.53222 -14.42746 -14.17596 -13.93529 -13.49311 -13.27224 -12.97711 -12.93962 -12.79009 -12.52487 -12.45390 -12.35095 -12.25666 -12.13977 -11.64034 -11.23207 -10.98097 -10.73685 -9.74777 -9.56338 -8.90318 -8.78022 -8.37594 -8.26509 -6.02662 0.40129 0.56540 0.63385 0.82729 1.32762 1.40968 1.47476 1.47711 2.18138 2.59048 2.83957 2.91386 3.08312 3.24071 3.60937 4.07588 4.23874 4.27749 4.32389 4.42117 4.56769 4.60535 4.61042 4.71043 4.79481 4.96700 5.00218 5.12393 5.17514 5.19320 5.24540 5.47989 5.58158 5.66335 5.76631 5.82113 5.87782 6.06954 6.20092 6.52462 6.79520 7.03318 7.10306 7.14129 7.91119 8.81618 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.007130 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.934192 B = 3925.989903 C = 6104.119557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.609 5.609 3 C 0.081 3.919 4 C -0.073 4.073 5 C -0.187 4.187 6 C -0.077 4.077 7 C -0.251 4.251 8 C 0.102 3.898 9 O -0.201 6.201 10 C -0.414 4.414 11 H 0.090 0.910 12 C -0.010 4.010 13 N -0.897 5.897 14 Si 1.001 2.999 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.259 1.259 18 C 0.091 3.909 19 C -0.087 4.087 20 C -0.105 4.105 21 Cl -0.099 7.099 22 C -0.066 4.066 23 C -0.182 4.182 24 C 0.222 3.778 25 N -0.853 5.853 26 H -0.001 1.001 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.267 0.733 34 H 0.108 0.892 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.401 0.599 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -2.414 -15.985 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.330 5.330 3 C -0.012 4.012 4 C -0.093 4.093 5 C -0.206 4.206 6 C -0.095 4.095 7 C -0.271 4.271 8 C 0.049 3.951 9 O -0.106 6.106 10 C -0.491 4.491 11 H 0.108 0.892 12 C -0.209 4.209 13 N -0.534 5.534 14 Si 0.823 3.177 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.183 1.183 18 C -0.006 4.006 19 C -0.108 4.108 20 C -0.134 4.134 21 Cl -0.070 7.070 22 C -0.085 4.085 23 C -0.205 4.205 24 C 0.113 3.887 25 N -0.394 5.394 26 H 0.018 0.982 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.231 0.769 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.770 -2.830 -15.641 15.914 hybrid contribution 0.176 0.550 1.784 1.876 sum 0.946 -2.279 -13.857 14.075 Atomic orbital electron populations 1.21354 0.79451 1.02125 0.98727 1.42475 1.02787 0.99136 1.88633 1.16980 1.04559 0.89887 0.89733 1.21262 0.97232 0.95032 0.95740 1.21037 1.03855 0.97407 0.98306 1.21144 0.97629 0.99253 0.91437 1.21257 1.08015 0.98049 0.99787 1.20677 0.94273 0.92183 0.88002 1.83991 1.64441 1.50187 1.11947 1.21634 1.34804 1.07887 0.84759 0.89241 1.26210 0.97464 0.96116 1.01148 1.70164 1.39983 1.16555 1.26708 0.84824 0.78695 0.77810 0.76419 1.19054 1.20063 1.18329 1.16913 1.03386 0.89947 0.90314 1.21720 0.95546 0.93843 0.99718 1.20708 1.07747 0.97612 0.87379 1.98312 1.89084 1.84795 1.34857 1.21013 0.98261 0.99751 0.89451 1.20696 1.04438 0.96527 0.98826 1.18210 0.91698 0.92378 0.86442 1.42367 1.68268 1.23527 1.05232 0.98204 0.90818 0.90909 0.83848 0.83120 0.84307 0.87142 0.92439 0.87364 0.82926 0.81428 0.76866 0.75804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.27 10.71 127.77 1.37 5.64 16 2 N -0.61 -23.20 1.76 -529.37 -0.93 -24.14 16 3 C 0.08 3.27 5.11 38.33 0.20 3.47 16 4 C -0.07 -2.28 9.88 22.39 0.22 -2.06 16 5 C -0.19 -5.44 10.04 22.28 0.22 -5.21 16 6 C -0.08 -2.58 10.04 22.28 0.22 -2.36 16 7 C -0.25 -11.01 9.16 22.37 0.21 -10.80 16 8 C 0.10 5.00 6.67 22.70 0.15 5.15 16 9 O -0.20 -11.69 8.14 -22.79 -0.19 -11.88 16 10 C -0.41 -24.19 9.49 67.91 0.64 -23.55 16 11 H 0.09 4.94 5.21 -2.91 -0.02 4.92 16 12 C -0.01 -0.57 5.49 84.82 0.47 -0.10 16 13 N -0.90 -54.62 13.67 21.61 0.30 -54.33 16 14 Si 1.00 44.50 29.55 68.60 2.03 46.52 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 C 0.09 3.46 5.11 38.26 0.20 3.66 16 19 C -0.09 -3.94 9.66 22.41 0.22 -3.72 16 20 C -0.11 -4.10 6.32 22.32 0.14 -3.96 16 21 Cl -0.10 -3.94 28.95 -2.72 -0.08 -4.02 16 22 C -0.07 -1.91 9.82 22.31 0.22 -1.69 16 23 C -0.18 -4.48 9.89 22.38 0.22 -4.26 16 24 C 0.22 6.29 6.78 38.23 0.26 6.55 16 25 N -0.85 -16.67 9.08 -50.94 -0.46 -17.13 16 26 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.07 2.13 8.05 -2.39 -0.02 2.11 16 28 H 0.07 2.08 8.05 -2.39 -0.02 2.06 16 29 H 0.14 3.39 6.57 -2.91 -0.02 3.37 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.11 5.05 5.64 -2.91 -0.02 5.04 16 33 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 34 H 0.11 6.21 6.75 -2.91 -0.02 6.19 16 35 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.40 7.93 6.54 -92.71 -0.61 7.32 16 38 H 0.41 5.13 8.85 -92.71 -0.82 4.31 16 Total: -1.00 -72.83 340.97 5.32 -67.51 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.30 Total: 30.70 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.95 Total: -33.25 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -1.10 Total: -95.60 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.19 Total: -11.88 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -3.94 SS G_CDS: -0.08 Total: -4.02 kcal Total: -72.83 5.32 -67.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.229 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds