Wall clock time and date at job start Tue Mar 31 2020 12:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.40044 * 120.00014 * 2 1 4 4 C 1.38653 * 120.08438 * 359.97438 * 3 2 1 5 5 C 1.38268 * 120.01662 * 180.02562 * 4 3 2 6 6 C 1.38377 * 120.18095 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 119.91056 * 180.02562 * 6 5 4 8 8 C 1.38334 * 120.17702 * 359.72653 * 6 5 4 9 9 C 1.38715 * 119.98233 * 0.55126 * 8 6 5 10 10 N 1.39966 * 120.09168 * 179.72244 * 9 8 6 11 11 C 1.39737 * 120.00279 * 354.98134 * 10 9 8 12 12 C 1.38786 * 120.11087 * 254.83927 * 11 10 9 13 13 C 1.38182 * 119.99346 * 180.02562 * 12 11 10 14 14 C 1.38359 * 120.20625 * 0.02656 * 13 12 11 15 15 C 1.38179 * 120.21653 * 359.67671 * 14 13 12 16 16 C 1.38720 * 120.00178 * 0.59677 * 15 14 13 17 17 O 1.35788 * 120.09909 * 179.70255 * 16 15 14 18 18 C 1.34798 * 117.00093 * 5.64989 * 17 16 15 19 19 H 1.08002 * 120.00338 * 354.93003 * 18 17 16 20 20 C 1.38622 * 119.99894 * 174.65902 * 18 17 16 21 21 N 1.31579 * 119.99961 * 0.27066 * 20 18 17 22 22 Si 1.86803 * 119.99969 * 180.27488 * 20 18 17 23 23 H 1.48503 * 109.47340 * 89.99586 * 22 20 18 24 24 H 1.48495 * 109.47098 * 209.99549 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99848 * 22 20 18 26 26 H 1.08997 * 109.47310 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46990 * 299.99389 * 1 2 3 28 28 H 1.09001 * 109.47503 * 59.99880 * 1 2 3 29 29 H 0.96996 * 120.00167 * 180.02562 * 2 1 3 30 30 H 1.08002 * 119.99433 * 0.04630 * 4 3 2 31 31 H 1.07998 * 119.90943 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.01122 * 180.27057 * 8 6 5 33 33 H 0.97003 * 119.99402 * 174.98318 * 10 9 8 34 34 H 1.08004 * 120.00552 * 0.04380 * 12 11 10 35 35 H 1.07999 * 119.89911 * 180.02562 * 13 12 11 36 36 H 1.07994 * 119.89005 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.99939 * 180.32655 * 15 14 13 38 38 H 0.97005 * 119.99456 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1652 1.2128 0.0000 4 6 1.4737 2.4146 -0.0005 5 6 2.1665 3.6112 -0.0011 6 6 3.5502 3.6140 -0.0005 7 17 4.4129 5.1204 -0.0005 8 6 4.2479 2.4195 0.0062 9 6 3.5601 1.2149 0.0010 10 7 4.2638 0.0050 0.0019 11 6 5.6576 0.0072 -0.0977 12 6 6.2711 -0.3542 -1.2889 13 6 7.6496 -0.3517 -1.3845 14 6 8.4223 0.0099 -0.2953 15 6 7.8204 0.3772 0.8931 16 6 6.4374 0.3723 1.0006 17 8 5.8440 0.7271 2.1693 18 6 6.6479 1.1855 3.1494 19 1 7.7196 1.1804 3.0156 20 6 6.0989 1.6688 4.3270 21 7 4.7932 1.6751 4.4901 22 14 7.2126 2.3112 5.6821 23 1 7.4444 3.7647 5.4849 24 1 6.5675 2.0873 7.0007 25 1 8.5113 1.5924 5.6378 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 0.3937 2.4161 -0.0002 31 1 1.6261 4.5463 -0.0019 32 1 5.3279 2.4248 0.0111 33 1 3.7839 -0.8351 0.0717 34 1 5.6712 -0.6372 -2.1413 35 1 8.1254 -0.6328 -2.3124 36 1 9.4993 0.0097 -0.3755 37 1 8.4268 0.6639 1.7395 38 1 4.4091 2.0137 5.3140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212602454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:12 Heat of formation + Delta-G solvation = 37.126527 kcal Electronic energy + Delta-G solvation = -24232.173027 eV Core-core repulsion = 20680.480299 eV Total energy + Delta-G solvation = -3551.692728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.79026 -38.71060 -36.51854 -36.12430 -34.87362 -34.44694 -32.27103 -30.04641 -29.20852 -28.97074 -27.30953 -25.59004 -25.33656 -22.43123 -21.62062 -21.06632 -20.58311 -18.00140 -17.88954 -17.36562 -16.17693 -15.93249 -15.19299 -14.72308 -14.58192 -14.24984 -14.08487 -13.91203 -13.83501 -13.63883 -13.23483 -13.05325 -12.87599 -12.61087 -12.05628 -11.71057 -11.59203 -11.43770 -11.29183 -11.14392 -10.90418 -10.85793 -10.81906 -10.48472 -10.28729 -9.75467 -9.39601 -9.36874 -8.84311 -8.17723 -7.60926 -7.25039 -6.45097 -6.37253 -4.02559 1.95908 1.96447 2.13734 2.31467 2.82880 3.12683 3.15045 3.18211 3.61594 3.95712 4.11652 4.38288 4.49076 5.06759 5.19607 5.21827 5.29852 5.56391 5.61606 5.62579 5.75180 5.77167 5.92969 5.95437 6.02349 6.18977 6.28054 6.44606 6.60784 6.63763 6.66079 6.94555 7.02900 7.08087 7.15267 7.29885 7.32698 7.48472 7.67592 7.86173 7.96275 8.17246 8.32281 9.00406 9.68361 10.71751 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.005982 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.784473 B = 4679.332959 C = 5493.920634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.757 5.757 3 C 0.150 3.850 4 C -0.151 4.151 5 C -0.127 4.127 6 C -0.033 4.033 7 Cl -0.091 7.091 8 C -0.117 4.117 9 C 0.186 3.814 10 N -0.679 5.679 11 C 0.057 3.943 12 C -0.074 4.074 13 C -0.211 4.211 14 C -0.070 4.070 15 C -0.233 4.233 16 C 0.147 3.853 17 O -0.154 6.154 18 C -0.396 4.396 19 H 0.090 0.910 20 C 0.045 3.955 21 N -0.849 5.849 22 Si 0.936 3.064 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.268 1.268 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.393 0.607 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.392 0.608 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 -1.664 -9.318 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.391 5.391 3 C 0.047 3.953 4 C -0.174 4.174 5 C -0.148 4.148 6 C -0.062 4.062 7 Cl -0.063 7.063 8 C -0.141 4.141 9 C 0.082 3.918 10 N -0.306 5.306 11 C -0.037 4.037 12 C -0.094 4.094 13 C -0.231 4.231 14 C -0.089 4.089 15 C -0.252 4.252 16 C 0.090 3.910 17 O -0.056 6.056 18 C -0.472 4.472 19 H 0.108 0.892 20 C -0.161 4.161 21 N -0.482 5.482 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.192 1.192 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.227 0.773 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.228 0.772 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.075 -1.373 -9.035 10.453 hybrid contribution 0.790 -0.197 0.944 1.246 sum -4.285 -1.570 -8.091 9.289 Atomic orbital electron populations 1.21390 0.80601 1.01631 1.00658 1.44085 1.05046 1.04837 1.85161 1.17323 0.88789 0.86892 1.02311 1.20137 0.98801 0.90018 1.08489 1.20395 0.91616 0.97771 1.05025 1.20258 0.91698 0.85912 1.08329 1.98309 1.77770 1.32912 1.97294 1.20229 1.00184 0.88951 1.04777 1.17119 0.88227 0.86727 0.99703 1.41119 1.02953 1.04380 1.82142 1.16525 0.82079 1.13152 0.91977 1.20855 0.94560 0.98973 0.95006 1.20463 0.93161 1.10640 0.98851 1.20809 0.98624 0.96664 0.92763 1.21118 0.94288 1.10395 0.99445 1.19778 0.91086 0.93286 0.86887 1.84044 1.35185 1.69100 1.17260 1.21310 0.90250 1.41945 0.93669 0.89215 1.25236 0.96418 0.96509 0.97896 1.70064 1.09865 1.41917 1.26360 0.85792 0.79267 0.79428 0.79461 1.19761 1.20307 1.19240 0.91492 0.93314 0.93482 0.77325 0.85930 0.86087 0.85173 0.77188 0.86929 0.87402 0.87388 0.85350 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 9.95 59.84 0.60 1.67 16 2 N -0.76 -10.50 5.89 -65.20 -0.38 -10.89 16 3 C 0.15 2.59 6.68 -83.48 -0.56 2.03 16 4 C -0.15 -2.45 9.31 -39.42 -0.37 -2.82 16 5 C -0.13 -2.18 9.82 -39.52 -0.39 -2.56 16 6 C -0.03 -0.65 6.32 -39.50 -0.25 -0.90 16 7 Cl -0.09 -1.67 28.95 -51.86 -1.50 -3.17 16 8 C -0.12 -2.48 8.75 -39.37 -0.34 -2.82 16 9 C 0.19 3.65 6.54 -83.50 -0.55 3.10 16 10 N -0.68 -12.72 5.16 -8.14 -0.04 -12.76 16 11 C 0.06 1.14 4.88 -83.56 -0.41 0.73 16 12 C -0.07 -1.29 9.97 -39.40 -0.39 -1.68 16 13 C -0.21 -3.52 10.04 -39.56 -0.40 -3.92 16 14 C -0.07 -1.24 10.04 -39.56 -0.40 -1.64 16 15 C -0.23 -4.90 9.16 -39.42 -0.36 -5.26 16 16 C 0.15 3.39 5.51 -38.91 -0.21 3.18 16 17 O -0.15 -4.19 9.24 0.02 0.00 -4.19 16 18 C -0.40 -10.81 9.49 30.87 0.29 -10.52 16 19 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 20 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 21 N -0.85 -24.61 13.67 55.48 0.76 -23.85 16 22 Si 0.94 20.61 29.55 -169.99 -5.02 15.58 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.53 7.95 -51.93 -0.41 0.12 16 28 H 0.05 0.45 7.95 -51.93 -0.41 0.04 16 29 H 0.39 5.02 7.02 -40.82 -0.29 4.74 16 30 H 0.12 1.65 6.74 -52.49 -0.35 1.29 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.13 3.01 6.31 -52.49 -0.33 2.68 16 33 H 0.39 6.41 7.02 -40.82 -0.29 6.13 16 34 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -30.63 338.23 -8.83 -39.45 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -3.90 Total: 15.00 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.83 Total: -20.27 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.33 Total: -47.50 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: 0.00 Total: -4.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.50 Total: -3.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.63 -8.83 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.580 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds