Wall clock time and date at job start Tue Mar 31 2020 12:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.40044 * 120.00014 * 2 1 4 4 C 1.38653 * 120.08438 * 359.97438 * 3 2 1 5 5 C 1.38268 * 120.01662 * 180.02562 * 4 3 2 6 6 C 1.38377 * 120.18095 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 119.91056 * 180.02562 * 6 5 4 8 8 C 1.38334 * 120.17702 * 359.72653 * 6 5 4 9 9 C 1.38715 * 119.98233 * 0.55126 * 8 6 5 10 10 N 1.39966 * 120.09168 * 179.72244 * 9 8 6 11 11 C 1.39737 * 120.00279 * 354.98134 * 10 9 8 12 12 C 1.38786 * 120.11087 * 254.83927 * 11 10 9 13 13 C 1.38182 * 119.99346 * 180.02562 * 12 11 10 14 14 C 1.38359 * 120.20625 * 0.02656 * 13 12 11 15 15 C 1.38179 * 120.21653 * 359.67671 * 14 13 12 16 16 C 1.38720 * 120.00178 * 0.59677 * 15 14 13 17 17 O 1.35788 * 120.09909 * 179.70255 * 16 15 14 18 18 C 1.34798 * 117.00093 * 5.64989 * 17 16 15 19 19 H 1.08002 * 120.00338 * 354.93003 * 18 17 16 20 20 C 1.38622 * 119.99894 * 174.65902 * 18 17 16 21 21 N 1.31579 * 119.99961 * 0.27066 * 20 18 17 22 22 Si 1.86803 * 119.99969 * 180.27488 * 20 18 17 23 23 H 1.48503 * 109.47340 * 89.99586 * 22 20 18 24 24 H 1.48495 * 109.47098 * 209.99549 * 22 20 18 25 25 H 1.48502 * 109.46905 * 329.99848 * 22 20 18 26 26 H 1.08997 * 109.47310 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46990 * 299.99389 * 1 2 3 28 28 H 1.09001 * 109.47503 * 59.99880 * 1 2 3 29 29 H 0.96996 * 120.00167 * 180.02562 * 2 1 3 30 30 H 1.08002 * 119.99433 * 0.04630 * 4 3 2 31 31 H 1.07998 * 119.90943 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.01122 * 180.27057 * 8 6 5 33 33 H 0.97003 * 119.99402 * 174.98318 * 10 9 8 34 34 H 1.08004 * 120.00552 * 0.04380 * 12 11 10 35 35 H 1.07999 * 119.89911 * 180.02562 * 13 12 11 36 36 H 1.07994 * 119.89005 * 179.97438 * 14 13 12 37 37 H 1.07999 * 119.99939 * 180.32655 * 15 14 13 38 38 H 0.97005 * 119.99456 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1652 1.2128 0.0000 4 6 1.4737 2.4146 -0.0005 5 6 2.1665 3.6112 -0.0011 6 6 3.5502 3.6140 -0.0005 7 17 4.4129 5.1204 -0.0005 8 6 4.2479 2.4195 0.0062 9 6 3.5601 1.2149 0.0010 10 7 4.2638 0.0050 0.0019 11 6 5.6576 0.0072 -0.0977 12 6 6.2711 -0.3542 -1.2889 13 6 7.6496 -0.3517 -1.3845 14 6 8.4223 0.0099 -0.2953 15 6 7.8204 0.3772 0.8931 16 6 6.4374 0.3723 1.0006 17 8 5.8440 0.7271 2.1693 18 6 6.6479 1.1855 3.1494 19 1 7.7196 1.1804 3.0156 20 6 6.0989 1.6688 4.3270 21 7 4.7932 1.6751 4.4901 22 14 7.2126 2.3112 5.6821 23 1 7.4444 3.7647 5.4849 24 1 6.5675 2.0873 7.0007 25 1 8.5113 1.5924 5.6378 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 0.3937 2.4161 -0.0002 31 1 1.6261 4.5463 -0.0019 32 1 5.3279 2.4248 0.0111 33 1 3.7839 -0.8351 0.0717 34 1 5.6712 -0.6372 -2.1413 35 1 8.1254 -0.6328 -2.3124 36 1 9.4993 0.0097 -0.3755 37 1 8.4268 0.6639 1.7395 38 1 4.4091 2.0137 5.3140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212602454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:11 Heat of formation + Delta-G solvation = 18.700459 kcal Electronic energy + Delta-G solvation = -24232.972041 eV Core-core repulsion = 20680.480299 eV Total energy + Delta-G solvation = -3552.491743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29243 -40.21382 -38.18595 -37.52831 -36.17404 -35.81566 -34.22088 -31.50429 -30.56241 -30.48360 -28.78065 -27.25738 -26.67405 -23.88050 -23.22855 -22.43571 -22.05752 -19.78314 -19.25957 -18.99672 -17.71726 -17.25949 -16.59905 -16.41139 -16.21957 -15.64728 -15.48795 -15.40172 -15.15122 -14.95020 -14.74839 -14.57698 -14.45253 -14.03945 -13.54926 -13.14750 -13.01970 -12.83905 -12.70504 -12.59773 -12.49414 -12.35453 -12.27407 -12.16150 -11.71970 -11.36144 -10.99748 -10.77147 -10.65065 -9.68170 -9.06227 -8.85477 -8.41882 -7.71994 -6.07394 0.46129 0.53850 0.69515 0.77283 1.32728 1.38847 1.41752 1.48048 2.16641 2.40134 2.75391 2.87853 2.98817 3.18719 3.53088 3.93672 4.20871 4.27759 4.31202 4.40345 4.52090 4.55806 4.66359 4.71698 4.76796 4.82972 4.98550 5.03883 5.08008 5.14768 5.17737 5.29051 5.54100 5.60105 5.65851 5.76949 5.77941 6.01338 6.09836 6.31758 6.64987 6.77873 6.95949 7.03211 7.84603 8.78724 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008907 B = 0.005982 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.784473 B = 4679.332959 C = 5493.920634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.754 5.754 3 C 0.152 3.848 4 C -0.152 4.152 5 C -0.122 4.122 6 C -0.057 4.057 7 Cl -0.092 7.092 8 C -0.142 4.142 9 C 0.163 3.837 10 N -0.678 5.678 11 C 0.056 3.944 12 C -0.074 4.074 13 C -0.186 4.186 14 C -0.070 4.070 15 C -0.249 4.249 16 C 0.111 3.889 17 O -0.201 6.201 18 C -0.412 4.412 19 H 0.095 0.905 20 C -0.013 4.013 21 N -0.904 5.904 22 Si 1.004 2.996 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.254 1.254 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.397 0.603 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.401 0.599 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -2.599 -11.380 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.387 5.387 3 C 0.047 3.953 4 C -0.175 4.175 5 C -0.143 4.143 6 C -0.086 4.086 7 Cl -0.063 7.063 8 C -0.166 4.166 9 C 0.060 3.940 10 N -0.307 5.307 11 C -0.038 4.038 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.088 4.088 15 C -0.269 4.269 16 C 0.058 3.942 17 O -0.106 6.106 18 C -0.488 4.488 19 H 0.112 0.888 20 C -0.212 4.212 21 N -0.542 5.542 22 Si 0.825 3.175 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.177 1.177 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.174 0.826 31 H 0.164 0.836 32 H 0.116 0.884 33 H 0.239 0.761 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.258 -2.358 -11.154 12.555 hybrid contribution 0.876 -0.046 1.235 1.515 sum -4.383 -2.403 -9.919 11.107 Atomic orbital electron populations 1.21651 0.78248 1.03751 1.01167 1.44285 1.06524 1.03846 1.83998 1.17518 0.88161 0.88655 1.00965 1.20541 1.00428 0.89203 1.07359 1.20742 0.90732 0.99373 1.03472 1.20448 0.92756 0.85544 1.09865 1.98290 1.78025 1.32621 1.97373 1.20110 0.98813 0.90581 1.07114 1.17302 0.89484 0.86427 1.00832 1.41082 1.02561 1.04677 1.82372 1.16897 0.82804 1.12062 0.92048 1.21259 0.95504 0.97917 0.94681 1.21043 0.92767 1.06838 0.99816 1.21201 1.00649 0.95432 0.91558 1.21270 0.93688 1.11155 1.00747 1.20386 0.92524 0.94334 0.86996 1.84017 1.35913 1.71977 1.18648 1.21694 0.90739 1.42044 0.94370 0.88792 1.26325 0.97908 0.96781 1.00203 1.70208 1.11875 1.44884 1.27196 0.84786 0.77755 0.78731 0.76261 1.19448 1.19676 1.17715 0.88774 0.93581 0.91961 0.76900 0.82562 0.83606 0.88384 0.76134 0.83859 0.83007 0.83878 0.86606 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 9.95 127.77 1.27 3.00 16 2 N -0.75 -19.64 5.89 -360.20 -2.12 -21.76 16 3 C 0.15 5.14 6.68 38.23 0.26 5.39 16 4 C -0.15 -4.70 9.31 22.38 0.21 -4.49 16 5 C -0.12 -4.11 9.82 22.31 0.22 -3.90 16 6 C -0.06 -2.29 6.32 22.33 0.14 -2.15 16 7 Cl -0.09 -3.44 28.95 -2.72 -0.08 -3.51 16 8 C -0.14 -6.26 8.75 22.41 0.20 -6.07 16 9 C 0.16 6.53 6.54 38.26 0.25 6.78 16 10 N -0.68 -25.79 5.16 -179.66 -0.93 -26.72 16 11 C 0.06 2.27 4.88 38.33 0.19 2.46 16 12 C -0.07 -2.40 9.97 22.39 0.22 -2.18 16 13 C -0.19 -5.47 10.04 22.29 0.22 -5.25 16 14 C -0.07 -2.33 10.04 22.28 0.22 -2.11 16 15 C -0.25 -10.66 9.16 22.37 0.21 -10.46 16 16 C 0.11 5.34 5.51 22.70 0.13 5.46 16 17 O -0.20 -11.60 9.24 -22.84 -0.21 -11.81 16 18 C -0.41 -23.84 9.49 67.91 0.64 -23.20 16 19 H 0.09 5.08 5.21 -2.91 -0.02 5.06 16 20 C -0.01 -0.75 5.49 84.82 0.47 -0.29 16 21 N -0.90 -55.45 13.67 21.61 0.30 -55.15 16 22 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 0.88 7.95 -2.38 -0.02 0.87 16 28 H 0.06 0.97 7.95 -2.39 -0.02 0.95 16 29 H 0.40 9.61 7.02 -92.71 -0.65 8.96 16 30 H 0.16 3.70 6.74 -2.91 -0.02 3.68 16 31 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.10 4.86 6.31 -2.91 -0.02 4.84 16 33 H 0.40 13.17 7.02 -92.71 -0.65 12.52 16 34 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 38 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -72.27 338.23 3.65 -68.61 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.17 Total: 41.37 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.84 Total: -36.98 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -2.75 Total: -103.63 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.21 Total: -11.81 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -3.44 SS G_CDS: -0.08 Total: -3.51 kcal Total: -72.27 3.65 -68.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.314 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds