Wall clock time and date at job start Tue Mar 31 2020 12:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46867 * 2 1 4 4 C 1.34718 * 116.99571 * 179.97438 * 3 2 1 5 5 O 1.21470 * 120.00097 * 359.97438 * 4 3 2 6 6 C 1.47723 * 119.99764 * 179.97438 * 4 3 2 7 7 C 1.39651 * 120.15189 * 359.97438 * 6 4 3 8 8 C 1.37917 * 119.85026 * 179.97438 * 7 6 4 9 9 C 1.38393 * 120.14744 * 359.97438 * 8 7 6 10 10 C 1.38342 * 120.30621 * 0.02900 * 9 8 7 11 11 C 1.50697 * 119.92634 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47158 * 204.99807 * 11 10 9 13 13 O 1.42900 * 109.47174 * 324.99992 * 11 10 9 14 14 C 1.34931 * 116.99839 * 210.00367 * 13 11 10 15 15 H 1.07997 * 120.00134 * 359.97438 * 14 13 11 16 16 C 1.38636 * 119.99628 * 179.97438 * 14 13 11 17 17 N 1.31581 * 120.00381 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47053 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47321 * 120.00017 * 18 16 14 21 21 H 1.48505 * 109.47178 * 239.99808 * 18 16 14 22 22 C 1.53003 * 109.47364 * 84.99787 * 11 10 9 23 23 F 1.39904 * 109.47043 * 59.99630 * 22 11 10 24 24 F 1.39891 * 109.47270 * 180.02562 * 22 11 10 25 25 F 1.39904 * 109.47040 * 300.00175 * 22 11 10 26 26 C 1.37968 * 120.14698 * 359.69336 * 10 9 8 27 27 H 1.09001 * 109.46998 * 59.99993 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00397 * 1 2 3 30 30 H 1.09001 * 109.47002 * 119.99449 * 2 1 3 31 31 H 1.08993 * 109.46955 * 239.99886 * 2 1 3 32 32 H 1.08005 * 120.07266 * 359.97438 * 7 6 4 33 33 H 1.07997 * 119.92929 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.84572 * 179.97438 * 9 8 7 35 35 H 0.97003 * 119.99898 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.07784 * 180.29957 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0895 0.5822 0.0015 6 6 3.9142 2.9105 0.0000 7 6 3.0664 4.0203 -0.0016 8 6 3.6003 5.2919 -0.0016 9 6 4.9727 5.4696 0.0006 10 6 5.8184 4.3747 0.0021 11 6 7.3116 4.5781 0.0039 12 1 7.7978 3.7040 -0.4294 13 8 7.6356 5.7356 -0.7690 14 6 8.8324 5.7407 -1.3921 15 1 9.4961 4.8945 -1.2936 16 6 9.2099 6.8322 -2.1590 17 7 8.4010 7.8630 -2.2795 18 14 10.8670 6.8396 -3.0211 19 1 11.5832 5.5722 -2.7279 20 1 10.6621 6.9654 -4.4865 21 1 11.6734 7.9875 -2.5338 22 6 7.7982 4.7722 1.4414 23 9 7.4809 3.6390 2.1982 24 9 9.1842 4.9615 1.4430 25 9 7.1741 5.8940 1.9976 26 6 5.2977 3.0971 0.0079 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.9951 3.8830 -0.0029 33 1 2.9458 6.1510 -0.0024 34 1 5.3855 6.4676 0.0002 35 1 8.6650 8.6265 -2.8163 36 1 5.9589 2.2431 0.0140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:05 Heat of formation + Delta-G solvation = -249.853265 kcal Electronic energy + Delta-G solvation = -26852.464920 eV Core-core repulsion = 22273.469158 eV Total energy + Delta-G solvation = -4578.995762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.33479 -46.89695 -46.77354 -40.57688 -38.97816 -36.81610 -36.50638 -32.78708 -32.02031 -31.27069 -30.95353 -27.77777 -24.99380 -24.63052 -23.31631 -22.69803 -21.54418 -20.53051 -18.36401 -18.03804 -17.57791 -17.42157 -17.09894 -16.76608 -16.64073 -15.77309 -15.38218 -14.63673 -14.34817 -14.31032 -13.88434 -13.73983 -13.67980 -13.47393 -13.34724 -13.24442 -13.01954 -12.98497 -12.97782 -12.82083 -12.38716 -12.03732 -12.02157 -11.81391 -11.61031 -11.39223 -11.06979 -10.85704 -10.70259 -10.52526 -10.31743 -10.09739 -9.62185 -8.88078 -8.74861 -8.30437 -6.19306 -3.87267 0.82579 1.39047 2.52281 2.59778 3.20803 3.25480 3.30029 3.46236 3.88017 4.07854 4.47795 4.58210 4.62312 4.68800 4.75301 4.76731 5.00411 5.02480 5.06228 5.19702 5.32973 5.36838 5.43164 5.50961 5.51148 5.67114 5.75186 5.91032 6.00896 6.02807 6.28154 6.33500 6.56320 6.75594 6.97627 7.28075 7.71687 8.15850 9.21869 9.66748 10.99243 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.003592 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.661999 B = 7792.345000 C = 8209.540453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.515 3.485 5 O -0.509 6.509 6 C -0.141 4.141 7 C -0.057 4.057 8 C -0.140 4.140 9 C -0.028 4.028 10 C -0.099 4.099 11 C 0.101 3.899 12 H 0.095 0.905 13 O -0.245 6.245 14 C -0.382 4.382 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.878 5.878 18 Si 0.931 3.069 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.422 3.578 23 F -0.197 7.197 24 F -0.177 7.177 25 F -0.182 7.182 26 C -0.032 4.032 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.263 0.737 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 -10.113 4.889 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.361 3.639 5 O -0.398 6.398 6 C -0.142 4.142 7 C -0.076 4.076 8 C -0.158 4.158 9 C -0.046 4.046 10 C -0.100 4.100 11 C 0.038 3.962 12 H 0.113 0.887 13 O -0.158 6.158 14 C -0.460 4.460 15 H 0.093 0.907 16 C -0.165 4.165 17 N -0.518 5.518 18 Si 0.757 3.243 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.367 3.633 23 F -0.179 7.179 24 F -0.159 7.159 25 F -0.163 7.163 26 C -0.050 4.050 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.073 0.927 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.916 -10.088 4.809 17.080 hybrid contribution 1.153 -0.252 -0.116 1.186 sum -11.762 -10.340 4.693 16.349 Atomic orbital electron populations 1.21808 0.92598 1.02924 1.03592 1.23025 0.95293 0.80163 1.02699 1.86541 1.23985 1.32251 1.84444 1.21180 0.80388 0.89916 0.72446 1.90825 1.60352 1.42506 1.46154 1.18855 0.93619 0.89793 1.11979 1.21431 0.99836 0.91693 0.94611 1.21192 0.95252 0.97025 1.02314 1.21558 0.92716 1.00351 0.89935 1.19457 0.94110 0.93076 1.03315 1.21563 0.91954 0.95683 0.87030 0.88705 1.85853 1.37213 1.32052 1.60722 1.21042 0.92519 1.04293 1.28185 0.90702 1.24984 0.98909 0.94886 0.97678 1.70020 1.35721 1.06361 1.39655 0.85803 0.81177 0.78382 0.78890 1.19531 1.20601 1.20551 1.22229 0.75884 0.73398 0.91801 1.93112 1.92810 1.52495 1.79515 1.93165 1.30778 1.94957 1.96955 1.93121 1.82407 1.53340 1.87469 1.21013 0.93416 0.97018 0.93594 0.91399 0.90269 0.91437 0.91188 0.91159 0.84663 0.84829 0.83554 0.92735 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.59 6.20 37.16 0.23 0.82 16 3 O -0.35 -4.35 9.47 -40.54 -0.38 -4.73 16 4 C 0.52 7.59 7.90 34.61 0.27 7.86 16 5 O -0.51 -8.60 16.14 -19.24 -0.31 -8.91 16 6 C -0.14 -2.12 5.87 -104.98 -0.62 -2.74 16 7 C -0.06 -0.75 9.62 -39.17 -0.38 -1.13 16 8 C -0.14 -1.93 10.03 -39.64 -0.40 -2.33 16 9 C -0.03 -0.48 8.81 -39.49 -0.35 -0.83 16 10 C -0.10 -1.82 4.62 -104.68 -0.48 -2.31 16 11 C 0.10 2.10 2.43 -27.88 -0.07 2.03 16 12 H 0.10 1.86 7.71 -51.93 -0.40 1.46 16 13 O -0.25 -6.35 8.50 -16.51 -0.14 -6.49 16 14 C -0.38 -10.41 9.08 30.88 0.28 -10.13 16 15 H 0.08 1.93 7.64 -52.49 -0.40 1.53 16 16 C 0.04 1.00 5.49 -17.51 -0.10 0.90 16 17 N -0.88 -25.66 13.67 55.48 0.76 -24.90 16 18 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.42 8.64 2.84 37.16 0.11 8.75 16 23 F -0.20 -3.67 16.97 2.25 0.04 -3.63 16 24 F -0.18 -3.88 16.57 2.25 0.04 -3.85 16 25 F -0.18 -3.82 16.52 2.25 0.04 -3.78 16 26 C -0.03 -0.53 9.16 -39.17 -0.36 -0.89 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.41 7.61 -52.48 -0.40 1.01 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.15 2.79 7.62 -52.49 -0.40 2.39 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.14 2.20 7.65 -52.48 -0.40 1.80 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -31.44 336.35 -5.06 -36.50 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.67 Total: -0.77 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.47 Total: -0.58 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.76 Total: -24.90 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.83 Total: -20.14 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 0.11 Total: -11.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.44 -5.06 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.353 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds