Wall clock time and date at job start Tue Mar 31 2020 12:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46867 * 2 1 4 4 C 1.34718 * 116.99571 * 179.97438 * 3 2 1 5 5 O 1.21470 * 120.00097 * 359.97438 * 4 3 2 6 6 C 1.47723 * 119.99764 * 179.97438 * 4 3 2 7 7 C 1.39651 * 120.15189 * 359.97438 * 6 4 3 8 8 C 1.37917 * 119.85026 * 179.97438 * 7 6 4 9 9 C 1.38393 * 120.14744 * 359.97438 * 8 7 6 10 10 C 1.38342 * 120.30621 * 0.02900 * 9 8 7 11 11 C 1.50697 * 119.92634 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47158 * 204.99807 * 11 10 9 13 13 O 1.42900 * 109.47174 * 324.99992 * 11 10 9 14 14 C 1.34931 * 116.99839 * 210.00367 * 13 11 10 15 15 H 1.07997 * 120.00134 * 359.97438 * 14 13 11 16 16 C 1.38636 * 119.99628 * 179.97438 * 14 13 11 17 17 N 1.31581 * 120.00381 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47053 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47321 * 120.00017 * 18 16 14 21 21 H 1.48505 * 109.47178 * 239.99808 * 18 16 14 22 22 C 1.53003 * 109.47364 * 84.99787 * 11 10 9 23 23 F 1.39904 * 109.47043 * 59.99630 * 22 11 10 24 24 F 1.39891 * 109.47270 * 180.02562 * 22 11 10 25 25 F 1.39904 * 109.47040 * 300.00175 * 22 11 10 26 26 C 1.37968 * 120.14698 * 359.69336 * 10 9 8 27 27 H 1.09001 * 109.46998 * 59.99993 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00397 * 1 2 3 30 30 H 1.09001 * 109.47002 * 119.99449 * 2 1 3 31 31 H 1.08993 * 109.46955 * 239.99886 * 2 1 3 32 32 H 1.08005 * 120.07266 * 359.97438 * 7 6 4 33 33 H 1.07997 * 119.92929 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.84572 * 179.97438 * 9 8 7 35 35 H 0.97003 * 119.99898 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.07784 * 180.29957 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0895 0.5822 0.0015 6 6 3.9142 2.9105 0.0000 7 6 3.0664 4.0203 -0.0016 8 6 3.6003 5.2919 -0.0016 9 6 4.9727 5.4696 0.0006 10 6 5.8184 4.3747 0.0021 11 6 7.3116 4.5781 0.0039 12 1 7.7978 3.7040 -0.4294 13 8 7.6356 5.7356 -0.7690 14 6 8.8324 5.7407 -1.3921 15 1 9.4961 4.8945 -1.2936 16 6 9.2099 6.8322 -2.1590 17 7 8.4010 7.8630 -2.2795 18 14 10.8670 6.8396 -3.0211 19 1 11.5832 5.5722 -2.7279 20 1 10.6621 6.9654 -4.4865 21 1 11.6734 7.9875 -2.5338 22 6 7.7982 4.7722 1.4414 23 9 7.4809 3.6390 2.1982 24 9 9.1842 4.9615 1.4430 25 9 7.1741 5.8940 1.9976 26 6 5.2977 3.0971 0.0079 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.9951 3.8830 -0.0029 33 1 2.9458 6.1510 -0.0024 34 1 5.3855 6.4676 0.0002 35 1 8.6650 8.6265 -2.8163 36 1 5.9589 2.2431 0.0140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224380230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:04 Heat of formation + Delta-G solvation = -267.008370 kcal Electronic energy + Delta-G solvation = -26853.208822 eV Core-core repulsion = 22273.469158 eV Total energy + Delta-G solvation = -4579.739663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.02123 -48.54948 -48.50364 -41.70236 -40.26671 -38.50586 -37.65369 -34.48860 -33.22677 -32.66996 -32.02534 -29.33233 -26.84408 -25.89698 -24.75456 -23.60863 -22.84259 -21.76415 -20.16670 -19.59649 -19.29494 -18.94423 -18.50093 -18.16586 -17.60485 -17.15777 -16.88963 -16.17749 -15.79589 -15.45344 -15.40020 -15.26507 -15.20668 -14.96041 -14.78873 -14.71197 -14.66865 -14.51880 -14.48720 -13.70401 -13.69698 -13.58192 -13.30246 -12.93505 -12.85429 -12.76693 -12.52175 -12.24185 -12.06206 -11.90534 -11.64140 -11.55012 -11.53352 -10.35859 -10.11512 -10.01898 -8.26392 -5.99133 -0.39602 0.14744 1.39683 1.40335 1.45149 1.51217 1.56141 1.82388 2.23524 2.61356 2.84113 2.97889 3.11239 3.15411 3.55355 3.56708 3.79191 3.95309 4.03511 4.07304 4.10926 4.16771 4.28621 4.36795 4.41996 4.66882 4.83652 4.87401 4.96228 5.12331 5.13956 5.17281 5.31890 5.39970 5.46802 5.75262 6.10180 6.61654 7.15187 7.69225 8.95327 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.003592 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.661999 B = 7792.345000 C = 8209.540453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.349 6.349 4 C 0.520 3.480 5 O -0.537 6.537 6 C -0.146 4.146 7 C -0.037 4.037 8 C -0.127 4.127 9 C -0.048 4.048 10 C -0.119 4.119 11 C 0.097 3.903 12 H 0.101 0.899 13 O -0.275 6.275 14 C -0.392 4.392 15 H 0.081 0.919 16 C -0.023 4.023 17 N -0.923 5.923 18 Si 1.001 2.999 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.276 1.276 22 C 0.427 3.573 23 F -0.183 7.183 24 F -0.187 7.187 25 F -0.186 7.186 26 C -0.038 4.038 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.121 0.879 35 H 0.265 0.735 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 -11.185 4.819 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.366 3.634 5 O -0.428 6.428 6 C -0.147 4.147 7 C -0.055 4.055 8 C -0.144 4.144 9 C -0.066 4.066 10 C -0.120 4.120 11 C 0.035 3.965 12 H 0.119 0.881 13 O -0.189 6.189 14 C -0.470 4.470 15 H 0.099 0.901 16 C -0.219 4.219 17 N -0.565 5.565 18 Si 0.823 3.177 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.202 1.202 22 C 0.372 3.628 23 F -0.165 7.165 24 F -0.168 7.168 25 F -0.167 7.167 26 C -0.057 4.057 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.190 0.810 33 H 0.186 0.814 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.603 -11.186 4.760 19.001 hybrid contribution 1.504 -0.037 -0.005 1.504 sum -13.099 -11.223 4.754 17.893 Atomic orbital electron populations 1.21832 0.89951 1.04488 1.03930 1.23381 0.97290 0.78698 1.02750 1.86530 1.22214 1.34106 1.83711 1.21091 0.81127 0.89315 0.71834 1.90815 1.61208 1.43260 1.47517 1.19008 0.93190 0.90908 1.11558 1.21805 1.01360 0.90428 0.91886 1.21500 0.93845 0.98705 1.00375 1.21498 0.94516 0.98860 0.91711 1.19303 0.92555 0.94240 1.05881 1.21751 0.94094 0.94276 0.86344 0.88123 1.85804 1.36910 1.34528 1.61643 1.21445 0.93067 1.04523 1.27964 0.90133 1.26101 1.02832 0.94460 0.98498 1.70158 1.38003 1.07265 1.41121 0.84768 0.76390 0.78815 0.77757 1.18176 1.19794 1.20194 1.22003 0.75325 0.73605 0.91873 1.93132 1.92650 1.51634 1.79099 1.93141 1.31620 1.95064 1.97021 1.93110 1.82429 1.53683 1.87492 1.20972 0.94511 0.96089 0.94089 0.91093 0.88107 0.91012 0.91151 0.91258 0.80960 0.81430 0.86131 0.92627 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.87 6.20 71.98 0.45 1.31 16 3 O -0.35 -7.66 9.47 -56.27 -0.53 -8.19 16 4 C 0.52 14.46 7.90 70.33 0.56 15.02 16 5 O -0.54 -17.72 16.14 19.93 0.32 -17.40 16 6 C -0.15 -4.13 5.87 -20.10 -0.12 -4.25 16 7 C -0.04 -0.86 9.62 22.53 0.22 -0.64 16 8 C -0.13 -3.23 10.03 22.23 0.22 -3.00 16 9 C -0.05 -1.66 8.81 22.33 0.20 -1.47 16 10 C -0.12 -4.45 4.62 -19.90 -0.09 -4.54 16 11 C 0.10 4.18 2.43 29.85 0.07 4.25 16 12 H 0.10 4.09 7.71 -2.39 -0.02 4.07 16 13 O -0.27 -14.74 8.50 -82.00 -0.70 -15.44 16 14 C -0.39 -21.79 9.08 67.91 0.62 -21.17 16 15 H 0.08 4.22 7.64 -2.91 -0.02 4.20 16 16 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 17 N -0.92 -55.37 13.67 21.61 0.30 -55.07 16 18 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 22 C 0.43 17.80 2.84 71.98 0.20 18.00 16 23 F -0.18 -6.81 16.97 44.97 0.76 -6.05 16 24 F -0.19 -8.33 16.57 44.97 0.75 -7.59 16 25 F -0.19 -7.98 16.52 44.97 0.74 -7.24 16 26 C -0.04 -1.26 9.16 22.54 0.21 -1.05 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.17 2.75 7.61 -2.91 -0.02 2.73 16 33 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.12 4.82 7.62 -2.91 -0.02 4.80 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.14 4.41 7.65 -2.91 -0.02 4.39 16 Total: -1.00 -69.15 336.35 8.52 -60.63 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.12 Total: 9.86 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 3.73 Total: 0.95 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.30 Total: -55.07 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.91 Total: -41.03 kcal Atomic # 9 Polarization: -23.12 SS G_CDS: 2.25 Total: -20.87 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.15 8.52 -60.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.380 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds