Wall clock time and date at job start Tue Mar 31 2020 12:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45210 * 109.46595 * 2 1 4 4 C 1.34228 * 116.99969 * 179.97438 * 3 2 1 5 5 O 1.20837 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.50691 * 120.00211 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46825 * 60.00187 * 6 4 3 8 8 O 1.42902 * 109.47516 * 180.02562 * 6 4 3 9 9 C 1.35672 * 117.00497 * 206.75671 * 8 6 4 10 10 C 1.39311 * 119.82102 * 181.80819 * 9 8 6 11 11 C 1.36433 * 120.18735 * 179.97438 * 10 9 8 12 12 C 1.40835 * 119.81042 * 0.02562 * 11 10 9 13 13 C 1.41218 * 120.18160 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99275 * 335.90843 * 13 12 11 15 15 C 1.39887 * 119.99965 * 155.91116 * 13 12 11 16 16 N 1.30873 * 120.00545 * 341.17413 * 15 13 12 17 17 Si 1.86801 * 119.99547 * 161.17580 * 15 13 12 18 18 H 1.48505 * 109.47126 * 89.99875 * 17 15 13 19 19 H 1.48494 * 109.47299 * 209.99707 * 17 15 13 20 20 H 1.48498 * 109.47271 * 329.99997 * 17 15 13 21 21 C 1.40835 * 119.64179 * 0.24870 * 12 11 10 22 22 C 1.36442 * 119.81292 * 359.46856 * 21 12 11 23 23 C 1.53004 * 109.47354 * 300.00208 * 6 4 3 24 24 F 1.39898 * 109.46752 * 300.00011 * 23 6 4 25 25 F 1.39902 * 109.46745 * 59.99857 * 23 6 4 26 26 F 1.39892 * 109.47134 * 179.97438 * 23 6 4 27 27 H 1.09001 * 109.47553 * 299.99476 * 1 2 3 28 28 H 1.08998 * 109.47168 * 60.00320 * 1 2 3 29 29 H 1.09008 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47150 * 240.00136 * 2 1 3 31 31 H 1.08998 * 109.47168 * 119.99680 * 2 1 3 32 32 H 1.07999 * 119.90587 * 0.02562 * 10 9 8 33 33 H 1.07992 * 120.09497 * 179.97438 * 11 10 9 34 34 H 0.96999 * 120.00699 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.09773 * 179.72448 * 21 12 11 36 36 H 1.07995 * 119.90761 * 180.26776 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5451 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.5841 3.4702 0.8895 8 8 5.3476 2.8630 0.0001 9 6 6.0191 3.9089 0.5439 10 6 7.4122 3.9147 0.5409 11 6 8.0950 4.9630 1.0852 12 6 7.3876 6.0409 1.6518 13 6 8.0864 7.1297 2.2178 14 1 9.0972 6.9958 2.5744 15 6 7.4697 8.3813 2.3168 16 7 6.4234 8.6555 1.5799 17 14 8.1394 9.6614 3.5009 18 1 9.1555 10.4935 2.8076 19 1 7.0295 10.5273 3.9736 20 1 8.7659 8.9813 4.6628 21 6 5.9793 6.0245 1.6559 22 6 5.3116 4.9713 1.1023 23 6 3.4495 3.6839 -1.2499 24 9 3.8812 3.0002 -2.3915 25 9 2.0524 3.7570 -1.2505 26 9 3.9837 4.9768 -1.2501 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 7.9531 3.0875 0.1057 33 1 9.1749 4.9657 1.0825 34 1 5.9960 9.5235 1.6482 35 1 5.4294 6.8452 2.0924 36 1 4.2317 4.9592 1.1008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:35 Heat of formation + Delta-G solvation = -258.647506 kcal Electronic energy + Delta-G solvation = -27294.684161 eV Core-core repulsion = 22715.307052 eV Total energy + Delta-G solvation = -4579.377109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -51.36425 -48.86705 -48.82648 -42.04710 -40.72230 -38.57278 -37.80237 -35.35549 -33.23243 -32.05260 -31.59472 -30.68414 -26.92855 -26.01436 -24.38225 -23.37946 -22.87943 -21.91695 -20.30362 -19.89782 -19.78033 -19.29518 -18.72060 -18.42864 -17.88383 -17.52933 -16.90496 -16.06762 -15.86902 -15.67714 -15.52926 -15.47389 -15.22876 -15.14747 -14.97419 -14.92238 -14.78445 -14.64434 -14.26020 -13.79336 -13.68001 -13.54678 -13.31268 -13.06702 -12.85461 -12.76075 -12.57632 -12.41937 -12.13046 -11.78564 -11.71305 -11.64503 -11.30809 -10.92771 -9.62008 -9.07294 -8.65562 -6.28118 0.40420 0.70999 0.84440 1.00985 1.40995 1.42894 1.51583 1.57465 2.01836 2.22367 2.34939 2.68692 2.70181 3.05420 3.32968 3.39256 3.66320 3.98089 4.00468 4.16207 4.29894 4.31404 4.65020 4.70699 4.92243 4.93950 4.99530 5.09901 5.29986 5.30775 5.36656 5.58365 5.85214 6.00895 6.10408 6.25996 6.37344 6.62112 6.90492 6.96930 8.31432 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.003459 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.092231 B = 8093.352450 C = 8325.659877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.341 6.341 4 C 0.480 3.520 5 O -0.488 6.488 6 C 0.049 3.951 7 H 0.167 0.833 8 O -0.280 6.280 9 C -0.041 4.041 10 C -0.096 4.096 11 C -0.209 4.209 12 C 0.068 3.932 13 C -0.491 4.491 14 H 0.080 0.920 15 C 0.037 3.963 16 N -0.820 5.820 17 Si 0.981 3.019 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.155 4.155 22 C -0.155 4.155 23 C 0.444 3.556 24 F -0.178 7.178 25 F -0.157 7.157 26 F -0.169 7.169 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.290 0.710 35 H 0.112 0.888 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 -10.023 -1.659 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.258 6.258 4 C 0.320 3.680 5 O -0.374 6.374 6 C -0.012 4.012 7 H 0.184 0.816 8 O -0.195 6.195 9 C -0.083 4.083 10 C -0.115 4.115 11 C -0.229 4.229 12 C 0.065 3.935 13 C -0.520 4.520 14 H 0.098 0.902 15 C -0.179 4.179 16 N -0.446 5.446 17 Si 0.802 3.198 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.174 4.174 22 C -0.173 4.173 23 C 0.389 3.611 24 F -0.160 7.160 25 F -0.138 7.138 26 F -0.150 7.150 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.071 -10.320 -1.843 15.987 hybrid contribution 0.249 0.846 0.086 0.886 sum -11.822 -9.473 -1.757 15.251 Atomic orbital electron populations 1.21862 0.89625 1.04807 1.03999 1.23590 0.97510 0.77569 1.03547 1.86524 1.20621 1.35526 1.83134 1.22111 0.82333 0.89595 0.73959 1.90709 1.61102 1.42049 1.43519 1.22655 0.85732 0.93647 0.99198 0.81618 1.86082 1.13097 1.42117 1.78224 1.18664 0.91623 0.89589 1.08420 1.19829 0.90279 0.99250 1.02139 1.20774 0.98770 0.96834 1.06516 1.17999 0.92611 0.92791 0.90073 1.19789 1.01479 0.94275 1.36493 0.90172 1.26741 0.94350 1.01277 0.95505 1.69876 1.19054 1.23892 1.31771 0.85216 0.78867 0.77051 0.78689 1.18869 1.19097 1.18230 1.20871 0.94657 0.97919 1.03984 1.20677 0.98530 0.95114 1.03006 1.20691 0.76154 0.78576 0.85646 1.93204 1.89676 1.79459 1.53628 1.93257 1.27773 1.96197 1.96595 1.93319 1.86028 1.39072 1.96567 0.90939 0.91251 0.87432 0.90579 0.90153 0.86107 0.86730 0.89927 0.87047 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 71.98 0.74 -0.87 16 2 C 0.05 0.88 6.19 71.98 0.45 1.33 16 3 O -0.34 -8.25 9.19 -51.39 -0.47 -8.73 16 4 C 0.48 14.52 7.06 71.23 0.50 15.02 16 5 O -0.49 -17.16 16.25 28.36 0.46 -16.70 16 6 C 0.05 1.58 2.37 29.85 0.07 1.65 16 7 H 0.17 4.70 5.81 -2.39 -0.01 4.69 16 8 O -0.28 -11.20 9.25 -70.82 -0.66 -11.86 16 9 C -0.04 -1.79 6.27 22.79 0.14 -1.65 16 10 C -0.10 -4.33 9.92 22.11 0.22 -4.11 16 11 C -0.21 -10.02 9.74 22.48 0.22 -9.80 16 12 C 0.07 3.53 5.57 -21.28 -0.12 3.41 16 13 C -0.49 -25.46 9.03 23.40 0.21 -25.24 16 14 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.04 1.79 5.11 85.23 0.44 2.22 16 16 N -0.82 -41.30 11.00 21.82 0.24 -41.06 16 17 Si 0.98 36.67 29.60 68.60 2.03 38.70 16 18 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 21 C -0.15 -7.78 8.65 22.49 0.19 -7.59 16 22 C -0.15 -6.84 7.49 22.11 0.17 -6.67 16 23 C 0.44 14.27 2.84 71.98 0.20 14.48 16 24 F -0.18 -5.98 16.97 44.97 0.76 -5.22 16 25 F -0.16 -4.35 16.21 44.97 0.73 -3.62 16 26 F -0.17 -6.25 14.67 44.97 0.66 -5.59 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16 32 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 33 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 34 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 35 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 36 H 0.12 4.47 5.30 -2.91 -0.02 4.46 16 Total: -1.00 -60.71 325.31 8.33 -52.39 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.14 Total: 19.50 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.43 Total: -17.82 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.24 Total: -41.06 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.67 Total: -37.28 kcal Atomic # 9 Polarization: -16.58 SS G_CDS: 2.15 Total: -14.43 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -60.71 8.33 -52.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.259 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds