Wall clock time and date at job start Tue Mar 31 2020 12:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47237 * 2 1 4 4 C 1.34232 * 117.00219 * 179.97438 * 3 2 1 5 5 O 1.20818 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99753 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47190 * 304.99652 * 6 4 3 8 8 O 1.42904 * 109.46784 * 185.00522 * 6 4 3 9 9 C 1.35668 * 117.00088 * 145.75897 * 8 6 4 10 10 C 1.39320 * 119.81923 * 186.20350 * 9 8 6 11 11 C 1.36433 * 120.18618 * 180.25585 * 10 9 8 12 12 C 1.40829 * 119.81130 * 359.49993 * 11 10 9 13 13 C 1.41217 * 120.18068 * 180.27324 * 12 11 10 14 14 H 1.07997 * 119.99793 * 325.21762 * 13 12 11 15 15 C 1.39884 * 119.99991 * 145.21740 * 13 12 11 16 16 N 1.30882 * 120.00213 * 4.45331 * 15 13 12 17 17 Si 1.86807 * 119.99892 * 184.45449 * 15 13 12 18 18 H 1.48493 * 109.46953 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46983 * 120.00182 * 17 15 13 20 20 H 1.48502 * 109.46966 * 239.99798 * 17 15 13 21 21 C 1.40834 * 119.64205 * 0.25316 * 12 11 10 22 22 C 1.36430 * 119.81243 * 0.02562 * 21 12 11 23 23 C 1.52993 * 109.47110 * 65.00234 * 6 4 3 24 24 F 1.39908 * 109.46786 * 179.97438 * 23 6 4 25 25 F 1.39900 * 109.47263 * 299.99565 * 23 6 4 26 26 F 1.39895 * 109.47422 * 60.00403 * 23 6 4 27 27 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47373 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.46839 * 60.00337 * 1 2 3 30 30 H 1.09001 * 109.47811 * 239.99582 * 2 1 3 31 31 H 1.09001 * 109.46839 * 119.99663 * 2 1 3 32 32 H 1.08005 * 119.90626 * 0.02562 * 10 9 8 33 33 H 1.08002 * 120.09590 * 179.77463 * 11 10 9 34 34 H 0.96999 * 120.00100 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.09316 * 180.02562 * 21 12 11 36 36 H 1.08008 * 119.90865 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5151 3.4988 -0.8407 8 8 5.3430 2.8647 -0.1159 9 6 5.9549 3.8536 -0.8146 10 6 7.3210 3.7739 -1.0762 11 6 7.9450 4.7667 -1.7736 12 6 7.2022 5.8691 -2.2385 13 6 7.8391 6.8983 -2.9661 14 1 8.8533 7.1814 -2.7260 15 6 7.1563 7.5511 -3.9978 16 7 5.8998 7.2694 -4.2318 17 14 8.0380 8.8250 -5.0416 18 1 9.4419 8.9597 -4.5771 19 1 8.0253 8.3950 -6.4630 20 1 7.3472 10.1334 -4.9142 21 6 5.8207 5.9395 -1.9741 22 6 5.2130 4.9411 -1.2704 23 6 3.5518 3.6413 1.3085 24 9 4.0870 4.9340 1.3093 25 9 2.1593 3.7126 1.4231 26 9 4.0724 2.9210 2.3889 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 7.8884 2.9255 -0.7228 33 1 9.0048 4.7051 -1.9725 34 1 5.4262 7.7223 -4.9470 35 1 5.2439 6.7815 -2.3276 36 1 4.1535 4.9933 -1.0672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225266639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:40 Heat of formation + Delta-G solvation = -245.608486 kcal Electronic energy + Delta-G solvation = -27206.391059 eV Core-core repulsion = 22627.579364 eV Total energy + Delta-G solvation = -4578.811695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.07270 -47.58569 -47.52241 -40.79655 -39.18464 -37.05115 -36.42716 -33.48594 -32.24378 -30.80515 -29.82320 -28.93746 -25.17141 -24.78353 -23.30915 -21.97596 -21.23366 -20.42765 -18.92901 -18.60333 -18.46133 -17.50935 -17.41887 -16.97019 -16.63584 -16.32371 -15.21934 -14.54617 -14.42835 -14.35649 -14.21125 -14.05291 -13.94574 -13.89264 -13.64227 -13.61437 -13.38898 -13.13043 -12.92976 -12.61120 -12.24295 -12.12520 -11.85083 -11.73077 -11.59326 -11.39597 -11.12468 -10.82768 -10.77306 -10.60840 -10.21015 -9.90507 -9.50848 -9.23321 -7.82859 -7.11449 -6.72449 -4.45030 1.67965 1.91489 2.53508 2.76592 2.84097 3.05319 3.08570 3.12420 3.39986 3.66036 3.91402 3.94515 4.30200 4.54619 4.57686 4.67700 4.71742 4.72096 5.01680 5.37408 5.46861 5.52290 5.70204 5.84817 6.05789 6.11614 6.35233 6.71092 6.92998 7.12859 7.19928 7.41130 7.44870 7.71226 7.83396 7.97126 8.15788 8.49712 8.80446 8.82928 10.19962 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.003430 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.653123 B = 8161.492418 C = 8306.601361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.346 6.346 4 C 0.468 3.532 5 O -0.461 6.461 6 C 0.054 3.946 7 H 0.151 0.849 8 O -0.269 6.269 9 C -0.032 4.032 10 C -0.098 4.098 11 C -0.186 4.186 12 C 0.090 3.910 13 C -0.460 4.460 14 H 0.078 0.922 15 C 0.069 3.931 16 N -0.813 5.813 17 Si 0.917 3.083 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.119 4.119 22 C -0.169 4.169 23 C 0.444 3.556 24 F -0.158 7.158 25 F -0.170 7.170 26 F -0.173 7.173 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.278 0.722 35 H 0.136 0.864 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 -8.117 6.124 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.264 6.264 4 C 0.306 3.694 5 O -0.344 6.344 6 C -0.008 4.008 7 H 0.168 0.832 8 O -0.183 6.183 9 C -0.074 4.074 10 C -0.117 4.117 11 C -0.206 4.206 12 C 0.088 3.912 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.146 4.146 16 N -0.440 5.440 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.138 4.138 22 C -0.188 4.188 23 C 0.389 3.611 24 F -0.139 7.139 25 F -0.152 7.152 26 F -0.155 7.155 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.993 -8.516 6.076 14.467 hybrid contribution 0.095 0.642 -0.462 0.797 sum -9.898 -7.874 5.613 13.838 Atomic orbital electron populations 1.21815 0.92157 1.03073 1.03880 1.23152 0.95623 0.79322 1.03051 1.86511 1.22655 1.33275 1.83939 1.22512 0.81533 0.90759 0.74561 1.90709 1.60282 1.41545 1.41895 1.22436 0.88046 0.92808 0.97540 0.83168 1.86131 1.12470 1.48265 1.71451 1.18720 0.92858 0.90464 1.05387 1.19614 0.90610 0.99760 1.01666 1.20764 0.99161 0.94945 1.05728 1.17720 0.91969 0.91571 0.89971 1.19520 1.00414 1.15280 1.13812 0.90356 1.25881 0.94681 0.96337 0.97660 1.69742 1.09360 1.37172 1.27769 0.86119 0.80400 0.79851 0.79470 1.18546 1.19950 1.19945 1.21225 0.96163 0.98565 0.97891 1.20604 0.97535 0.96357 1.04303 1.20677 0.75023 0.78622 0.86813 1.93304 1.85793 1.38243 1.96600 1.93233 1.29200 1.96280 1.96441 1.93216 1.86573 1.77611 1.58077 0.90023 0.91241 0.91201 0.90737 0.90838 0.87885 0.87585 0.91052 0.84642 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.15 0.38 -0.69 16 2 C 0.06 0.62 6.19 37.15 0.23 0.85 16 3 O -0.35 -4.58 9.39 -39.26 -0.37 -4.95 16 4 C 0.47 7.48 6.99 36.01 0.25 7.73 16 5 O -0.46 -8.43 16.25 -25.46 -0.41 -8.85 16 6 C 0.05 0.90 2.32 -27.89 -0.06 0.84 16 7 H 0.15 2.31 5.72 -51.93 -0.30 2.02 16 8 O -0.27 -5.45 9.22 -38.61 -0.36 -5.81 16 9 C -0.03 -0.71 6.45 -38.78 -0.25 -0.96 16 10 C -0.10 -2.18 9.92 -39.83 -0.40 -2.58 16 11 C -0.19 -4.37 9.74 -39.25 -0.38 -4.75 16 12 C 0.09 2.29 5.55 -106.80 -0.59 1.70 16 13 C -0.46 -11.71 9.03 -37.84 -0.34 -12.05 16 14 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 15 C 0.07 1.68 5.42 -17.34 -0.09 1.59 16 16 N -0.81 -20.26 10.60 55.54 0.59 -19.68 16 17 Si 0.92 18.32 29.56 -169.99 -5.03 13.30 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 C -0.12 -2.94 8.62 -39.25 -0.34 -3.28 16 22 C -0.17 -3.74 7.78 -39.83 -0.31 -4.05 16 23 C 0.44 7.13 2.84 37.15 0.11 7.23 16 24 F -0.16 -2.77 15.16 2.25 0.03 -2.74 16 25 F -0.17 -2.43 16.36 2.25 0.04 -2.39 16 26 F -0.17 -2.88 16.97 2.25 0.04 -2.85 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 33 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 35 H 0.14 3.46 6.13 -52.49 -0.32 3.14 16 36 H 0.10 1.83 5.26 -52.48 -0.28 1.55 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -28.07 326.06 -5.75 -33.82 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.40 Total: 3.65 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.80 Total: -8.43 kcal Atomic # 7 Polarization: -20.26 SS G_CDS: 0.59 Total: -19.68 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.14 Total: -19.61 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.11 Total: -7.97 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.07 -5.75 -33.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.785 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds