Wall clock time and date at job start Tue Mar 31 2020 12:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47237 * 2 1 4 4 C 1.34232 * 117.00219 * 179.97438 * 3 2 1 5 5 O 1.20818 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99753 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47190 * 304.99652 * 6 4 3 8 8 O 1.42904 * 109.46784 * 185.00522 * 6 4 3 9 9 C 1.35668 * 117.00088 * 145.75897 * 8 6 4 10 10 C 1.39320 * 119.81923 * 186.20350 * 9 8 6 11 11 C 1.36433 * 120.18618 * 180.25585 * 10 9 8 12 12 C 1.40829 * 119.81130 * 359.49993 * 11 10 9 13 13 C 1.41217 * 120.18068 * 180.27324 * 12 11 10 14 14 H 1.07997 * 119.99793 * 325.21762 * 13 12 11 15 15 C 1.39884 * 119.99991 * 145.21740 * 13 12 11 16 16 N 1.30882 * 120.00213 * 4.45331 * 15 13 12 17 17 Si 1.86807 * 119.99892 * 184.45449 * 15 13 12 18 18 H 1.48493 * 109.46953 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46983 * 120.00182 * 17 15 13 20 20 H 1.48502 * 109.46966 * 239.99798 * 17 15 13 21 21 C 1.40834 * 119.64205 * 0.25316 * 12 11 10 22 22 C 1.36430 * 119.81243 * 0.02562 * 21 12 11 23 23 C 1.52993 * 109.47110 * 65.00234 * 6 4 3 24 24 F 1.39908 * 109.46786 * 179.97438 * 23 6 4 25 25 F 1.39900 * 109.47263 * 299.99565 * 23 6 4 26 26 F 1.39895 * 109.47422 * 60.00403 * 23 6 4 27 27 H 1.09006 * 109.47264 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47373 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.46839 * 60.00337 * 1 2 3 30 30 H 1.09001 * 109.47811 * 239.99582 * 2 1 3 31 31 H 1.09001 * 109.46839 * 119.99663 * 2 1 3 32 32 H 1.08005 * 119.90626 * 0.02562 * 10 9 8 33 33 H 1.08002 * 120.09590 * 179.77463 * 11 10 9 34 34 H 0.96999 * 120.00100 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.09316 * 180.02562 * 21 12 11 36 36 H 1.08008 * 119.90865 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5151 3.4988 -0.8407 8 8 5.3430 2.8647 -0.1159 9 6 5.9549 3.8536 -0.8146 10 6 7.3210 3.7739 -1.0762 11 6 7.9450 4.7667 -1.7736 12 6 7.2022 5.8691 -2.2385 13 6 7.8391 6.8983 -2.9661 14 1 8.8533 7.1814 -2.7260 15 6 7.1563 7.5511 -3.9978 16 7 5.8998 7.2694 -4.2318 17 14 8.0380 8.8250 -5.0416 18 1 9.4419 8.9597 -4.5771 19 1 8.0253 8.3950 -6.4630 20 1 7.3472 10.1334 -4.9142 21 6 5.8207 5.9395 -1.9741 22 6 5.2130 4.9411 -1.2704 23 6 3.5518 3.6413 1.3085 24 9 4.0870 4.9340 1.3093 25 9 2.1593 3.7126 1.4231 26 9 4.0724 2.9210 2.3889 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 7.8884 2.9255 -0.7228 33 1 9.0048 4.7051 -1.9725 34 1 5.4262 7.7223 -4.9470 35 1 5.2439 6.7815 -2.3276 36 1 4.1535 4.9933 -1.0672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:39 Heat of formation + Delta-G solvation = -258.610735 kcal Electronic energy + Delta-G solvation = -27206.954879 eV Core-core repulsion = 22627.579364 eV Total energy + Delta-G solvation = -4579.375515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.38541 -48.87953 -48.85425 -42.06590 -40.75976 -38.58552 -37.81032 -35.27886 -33.23809 -32.07080 -31.60983 -30.65676 -26.91736 -26.05105 -24.38506 -23.36869 -22.88258 -21.94241 -20.31957 -19.89439 -19.81061 -19.28271 -18.75861 -18.45095 -17.90307 -17.54382 -16.86908 -16.08160 -15.85515 -15.68802 -15.53883 -15.45644 -15.25046 -15.16471 -14.98613 -14.94419 -14.81554 -14.64346 -14.29631 -13.77631 -13.64736 -13.46037 -13.35037 -13.10926 -12.92712 -12.77309 -12.58149 -12.41095 -12.08226 -11.83814 -11.65180 -11.64993 -11.28721 -11.01130 -9.63852 -8.93862 -8.52456 -6.34497 0.39902 0.65037 0.83941 1.00250 1.41628 1.42793 1.51988 1.57181 1.95950 2.25137 2.32885 2.68720 2.75767 3.05100 3.30738 3.37425 3.60380 3.97265 3.99942 4.14954 4.28852 4.30408 4.63341 4.69770 4.91724 4.92908 4.99102 5.10303 5.29475 5.33103 5.38397 5.59621 5.85286 6.01149 6.13109 6.25422 6.36914 6.63989 6.95127 6.97172 8.41819 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.003430 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.653123 B = 8161.492418 C = 8306.601361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.342 6.342 4 C 0.476 3.524 5 O -0.488 6.488 6 C 0.045 3.955 7 H 0.166 0.834 8 O -0.279 6.279 9 C -0.023 4.023 10 C -0.107 4.107 11 C -0.192 4.192 12 C 0.059 3.941 13 C -0.493 4.493 14 H 0.077 0.923 15 C 0.029 3.971 16 N -0.841 5.841 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.267 1.267 21 C -0.139 4.139 22 C -0.166 4.166 23 C 0.451 3.549 24 F -0.167 7.167 25 F -0.156 7.156 26 F -0.176 7.176 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.285 0.715 35 H 0.121 0.879 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 -8.659 6.157 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.258 6.258 4 C 0.316 3.684 5 O -0.374 6.374 6 C -0.016 4.016 7 H 0.183 0.817 8 O -0.194 6.194 9 C -0.065 4.065 10 C -0.125 4.125 11 C -0.211 4.211 12 C 0.057 3.943 13 C -0.524 4.524 14 H 0.095 0.905 15 C -0.183 4.183 16 N -0.469 5.469 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.192 1.192 21 C -0.159 4.159 22 C -0.185 4.185 23 C 0.396 3.604 24 F -0.148 7.148 25 F -0.137 7.137 26 F -0.157 7.157 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.051 -9.071 6.129 15.555 hybrid contribution 0.266 0.653 -0.367 0.795 sum -10.785 -8.418 5.762 14.845 Atomic orbital electron populations 1.21860 0.89589 1.04815 1.04018 1.23585 0.97549 0.77629 1.03495 1.86519 1.20720 1.35487 1.83112 1.22273 0.82329 0.89838 0.73977 1.90701 1.61110 1.42134 1.43466 1.22681 0.86352 0.94131 0.98456 0.81750 1.86098 1.14598 1.47563 1.71098 1.18800 0.93022 0.90486 1.04241 1.19883 0.91182 1.00084 1.01373 1.20943 0.99809 0.94733 1.05631 1.18058 0.92759 0.92587 0.90936 1.19747 1.00774 1.16636 1.15195 0.90505 1.26699 0.95318 0.97954 0.98338 1.69805 1.10506 1.38150 1.28446 0.85067 0.79167 0.77301 0.77604 1.18316 1.19434 1.19171 1.21172 0.96174 0.99196 0.99315 1.20773 0.98845 0.95604 1.03257 1.20446 0.75549 0.78060 0.86321 1.93292 1.86055 1.38860 1.96610 1.93264 1.27952 1.96176 1.96337 1.93214 1.86728 1.77638 1.58163 0.87446 0.91087 0.91047 0.90393 0.90447 0.85854 0.86423 0.90428 0.86086 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 71.98 0.74 -0.92 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.34 -8.38 9.39 -51.44 -0.48 -8.87 16 4 C 0.48 14.54 6.99 71.24 0.50 15.04 16 5 O -0.49 -17.36 16.25 28.41 0.46 -16.90 16 6 C 0.04 1.45 2.32 29.85 0.07 1.52 16 7 H 0.17 4.78 5.72 -2.38 -0.01 4.77 16 8 O -0.28 -11.00 9.22 -70.82 -0.65 -11.65 16 9 C -0.02 -1.00 6.45 22.79 0.15 -0.85 16 10 C -0.11 -4.70 9.92 22.11 0.22 -4.48 16 11 C -0.19 -9.04 9.74 22.48 0.22 -8.82 16 12 C 0.06 3.05 5.55 -21.28 -0.12 2.93 16 13 C -0.49 -25.65 9.03 23.40 0.21 -25.44 16 14 H 0.08 3.85 7.85 -2.91 -0.02 3.83 16 15 C 0.03 1.42 5.42 85.23 0.46 1.88 16 16 N -0.84 -42.50 10.60 21.82 0.23 -42.27 16 17 Si 0.99 37.57 29.56 68.60 2.03 39.60 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 21 C -0.14 -6.98 8.62 22.48 0.19 -6.78 16 22 C -0.17 -7.29 7.78 22.11 0.17 -7.12 16 23 C 0.45 13.79 2.84 71.98 0.20 13.99 16 24 F -0.17 -5.64 15.16 44.97 0.68 -4.96 16 25 F -0.16 -4.13 16.36 44.97 0.74 -3.40 16 26 F -0.18 -5.61 16.97 44.97 0.76 -4.85 16 27 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 31 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 34 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 35 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 36 H 0.12 4.50 5.26 -2.91 -0.02 4.49 16 Total: -1.00 -60.03 326.06 8.37 -51.67 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.14 Total: 19.33 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.46 Total: -17.72 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.23 Total: -42.27 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.67 Total: -37.41 kcal Atomic # 9 Polarization: -15.38 SS G_CDS: 2.18 Total: -13.20 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -60.03 8.37 -51.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.945 kcal (2) G-P(sol) polarization free energy of solvation -60.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds