Wall clock time and date at job start Tue Mar 31 2020 12:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47394 * 2 1 4 4 C 1.34233 * 117.00380 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99477 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00144 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47005 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47380 * 53.44023 * 7 6 4 9 9 C 1.50704 * 109.47049 * 173.43965 * 7 6 4 10 10 H 1.07998 * 120.00141 * 243.44820 * 9 7 6 11 11 C 1.37873 * 119.99633 * 63.45227 * 9 7 6 12 12 N 1.31512 * 120.00531 * 5.82238 * 11 9 7 13 13 Si 1.86808 * 119.99735 * 185.82599 * 11 9 7 14 14 H 1.48498 * 109.47129 * 84.98388 * 13 11 9 15 15 H 1.48500 * 109.47046 * 204.98607 * 13 11 9 16 16 H 1.48502 * 109.46988 * 324.98107 * 13 11 9 17 17 O 1.42900 * 109.47296 * 293.43873 * 7 6 4 18 18 C 1.36011 * 117.00291 * 149.99583 * 17 7 6 19 19 C 1.38868 * 120.05974 * 269.98429 * 18 17 7 20 20 F 1.35106 * 120.01404 * 359.97438 * 19 18 17 21 21 C 1.38322 * 119.97696 * 180.02562 * 19 18 17 22 22 C 1.38290 * 120.08675 * 359.72400 * 21 19 18 23 23 C 1.38409 * 120.10973 * 0.55251 * 22 21 19 24 24 F 1.35107 * 119.98866 * 179.72413 * 23 22 21 25 25 C 1.38586 * 120.02416 * 359.44694 * 23 22 21 26 26 F 1.35100 * 120.04093 * 180.25295 * 25 23 22 27 27 H 1.08999 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00372 * 1 2 3 29 29 H 1.09008 * 109.47122 * 59.99543 * 1 2 3 30 30 H 1.08996 * 109.47178 * 239.99943 * 2 1 3 31 31 H 1.09006 * 109.46938 * 119.99956 * 2 1 3 32 32 H 1.08995 * 109.47455 * 60.00520 * 6 4 3 33 33 H 1.08998 * 109.47479 * 300.00347 * 6 4 3 34 34 H 0.97001 * 120.00344 * 180.02562 * 12 11 9 35 35 H 1.08006 * 119.96187 * 180.02562 * 21 19 18 36 36 H 1.07998 * 119.95071 * 180.27809 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7795 2.2266 -0.8250 9 6 6.0242 4.2405 -0.1628 10 1 6.6119 4.4814 -1.0362 11 6 5.8006 5.1983 0.8034 12 7 5.1840 4.8754 1.9193 13 14 6.3733 6.9548 0.5274 14 1 5.3433 7.6959 -0.2438 15 1 6.5828 7.6190 1.8390 16 1 7.6493 6.9458 -0.2322 17 8 5.8962 2.2976 1.2365 18 6 7.0559 1.5875 1.2090 19 6 7.0289 0.2206 0.9655 20 9 5.8501 -0.4054 0.7560 21 6 8.2093 -0.5000 0.9384 22 6 9.4172 0.1399 1.1480 23 6 9.4478 1.5011 1.3967 24 9 10.6288 2.1229 1.6066 25 6 8.2680 2.2276 1.4248 26 9 8.2979 3.5572 1.6625 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.5845 3.4700 0.8895 33 1 3.5852 3.4690 -0.8904 34 1 5.0263 5.5493 2.5989 35 1 8.1881 -1.5630 0.7486 36 1 10.3378 -0.4241 1.1220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225872686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:20 Heat of formation + Delta-G solvation = -229.106450 kcal Electronic energy + Delta-G solvation = -27935.221774 eV Core-core repulsion = 23357.125661 eV Total energy + Delta-G solvation = -4578.096113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.84357 -48.08555 -47.74373 -39.74012 -38.55073 -36.76045 -35.72319 -33.17048 -31.57648 -30.56090 -29.52534 -28.78331 -26.22111 -23.34762 -22.69981 -22.30076 -21.62264 -19.91087 -18.00266 -17.34791 -17.33815 -16.98174 -16.48803 -16.13339 -15.86601 -15.54045 -15.29381 -15.07314 -14.71219 -14.55356 -14.17324 -14.01133 -13.74485 -13.71626 -13.30349 -13.09430 -12.71466 -12.49432 -12.45441 -12.03626 -11.80164 -11.55003 -11.28720 -11.13143 -10.96760 -10.96742 -10.88489 -10.72886 -10.20662 -10.07840 -9.64309 -9.56758 -8.75261 -8.47844 -8.17043 -8.00143 -6.19971 -4.37472 1.25821 1.32962 3.06932 3.21474 3.30776 3.32426 3.36445 3.57256 4.12025 4.29581 4.58006 4.80674 4.91594 5.04799 5.10782 5.14902 5.19019 5.26669 5.40244 5.50893 5.86251 5.91935 5.95090 6.08548 6.09591 6.17541 6.30557 6.32291 6.45971 6.54783 6.68905 7.02168 7.16820 7.25776 7.68255 7.91381 8.45163 8.60121 8.84891 9.37820 10.82130 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.006693 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.217666 B = 4182.708896 C = 6533.743520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.369 6.369 4 C 0.449 3.551 5 O -0.497 6.497 6 C -0.096 4.096 7 C 0.235 3.765 8 H 0.023 0.977 9 C -0.561 4.561 10 H 0.066 0.934 11 C 0.095 3.905 12 N -0.843 5.843 13 Si 0.889 3.111 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.295 6.295 18 C 0.096 3.904 19 C 0.088 3.912 20 F -0.100 7.100 21 C -0.144 4.144 22 C -0.127 4.127 23 C 0.047 3.953 24 F -0.134 7.134 25 C 0.085 3.915 26 F -0.098 7.098 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.266 0.734 35 H 0.143 0.857 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -9.179 -2.134 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.287 6.287 4 C 0.292 3.708 5 O -0.383 6.383 6 C -0.134 4.134 7 C 0.182 3.818 8 H 0.041 0.959 9 C -0.597 4.597 10 H 0.084 0.916 11 C -0.114 4.114 12 N -0.477 5.477 13 Si 0.715 3.285 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.212 6.212 18 C 0.048 3.952 19 C 0.067 3.933 20 F -0.078 7.078 21 C -0.163 4.163 22 C -0.146 4.146 23 C 0.027 3.973 24 F -0.113 7.113 25 C 0.064 3.936 26 F -0.076 7.076 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.037 -9.320 -1.798 9.549 hybrid contribution 0.443 1.062 -0.111 1.156 sum -0.593 -8.259 -1.909 8.497 Atomic orbital electron populations 1.21778 0.93461 1.02257 1.03248 1.22820 0.94675 0.81827 1.02013 1.86562 1.26282 1.30947 1.84907 1.24869 0.79599 0.94422 0.71877 1.90700 1.59683 1.43194 1.44772 1.21745 0.96690 0.88483 1.06450 1.19807 0.88528 0.92601 0.80878 0.95924 1.21388 1.35870 0.94952 1.07495 0.91598 1.24968 0.93414 0.98836 0.94223 1.69986 1.38173 1.33813 1.05690 0.86659 0.79545 0.84333 0.77918 1.20208 1.20891 1.19574 1.86359 1.32439 1.67100 1.35255 1.18586 0.88140 0.89100 0.99387 1.18087 0.82562 0.90480 1.02159 1.91670 1.43399 1.81252 1.91512 1.20816 0.90248 1.00769 1.04448 1.20603 0.99018 0.91605 1.03335 1.17595 0.80139 0.91386 1.08203 1.91482 1.44083 1.82866 1.92824 1.17947 0.92059 0.79606 1.04001 1.91620 1.96809 1.28238 1.90884 0.90903 0.91661 0.91786 0.91937 0.91747 0.85386 0.87959 0.92386 0.83893 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 37.15 0.38 -1.24 16 2 C 0.06 0.88 6.19 37.15 0.23 1.11 16 3 O -0.37 -6.71 10.22 -39.27 -0.40 -7.11 16 4 C 0.45 9.31 7.85 36.00 0.28 9.60 16 5 O -0.50 -11.04 11.36 -23.65 -0.27 -11.30 16 6 C -0.10 -2.11 5.25 -27.89 -0.15 -2.26 16 7 C 0.23 5.72 1.87 -27.88 -0.05 5.66 16 8 H 0.02 0.55 7.66 -51.93 -0.40 0.16 16 9 C -0.56 -14.44 8.03 -34.44 -0.28 -14.72 16 10 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.09 2.45 4.97 -17.82 -0.09 2.36 16 12 N -0.84 -22.43 11.17 55.43 0.62 -21.81 16 13 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 O -0.29 -7.47 7.81 -32.48 -0.25 -7.73 16 18 C 0.10 2.18 5.56 -39.15 -0.22 1.96 16 19 C 0.09 1.72 7.31 -39.32 -0.29 1.43 16 20 F -0.10 -2.11 13.21 2.25 0.03 -2.08 16 21 C -0.14 -2.18 10.02 -39.53 -0.40 -2.58 16 22 C -0.13 -1.85 10.02 -39.50 -0.40 -2.25 16 23 C 0.05 0.86 7.30 -39.39 -0.29 0.57 16 24 F -0.13 -2.40 17.18 2.25 0.04 -2.36 16 25 C 0.09 1.86 7.31 -39.26 -0.29 1.57 16 26 F -0.10 -2.40 15.91 2.25 0.04 -2.37 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 32 H 0.13 3.05 6.76 -51.93 -0.35 2.70 16 33 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 325.19 15.07 4.90 4.90 Total: -1.00 -29.18 325.19 -5.54 -34.71 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.68 Total: -1.39 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.54 Total: 1.23 kcal Atomic # 7 Polarization: -22.43 SS G_CDS: 0.62 Total: -21.81 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.92 Total: -26.14 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.10 Total: -6.81 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.18 -5.54 -34.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225872686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.392 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds