Wall clock time and date at job start Tue Mar 31 2020 12:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47394 * 2 1 4 4 C 1.34233 * 117.00380 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99477 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00144 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47005 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47380 * 53.44023 * 7 6 4 9 9 C 1.50704 * 109.47049 * 173.43965 * 7 6 4 10 10 H 1.07998 * 120.00141 * 243.44820 * 9 7 6 11 11 C 1.37873 * 119.99633 * 63.45227 * 9 7 6 12 12 N 1.31512 * 120.00531 * 5.82238 * 11 9 7 13 13 Si 1.86808 * 119.99735 * 185.82599 * 11 9 7 14 14 H 1.48498 * 109.47129 * 84.98388 * 13 11 9 15 15 H 1.48500 * 109.47046 * 204.98607 * 13 11 9 16 16 H 1.48502 * 109.46988 * 324.98107 * 13 11 9 17 17 O 1.42900 * 109.47296 * 293.43873 * 7 6 4 18 18 C 1.36011 * 117.00291 * 149.99583 * 17 7 6 19 19 C 1.38868 * 120.05974 * 269.98429 * 18 17 7 20 20 F 1.35106 * 120.01404 * 359.97438 * 19 18 17 21 21 C 1.38322 * 119.97696 * 180.02562 * 19 18 17 22 22 C 1.38290 * 120.08675 * 359.72400 * 21 19 18 23 23 C 1.38409 * 120.10973 * 0.55251 * 22 21 19 24 24 F 1.35107 * 119.98866 * 179.72413 * 23 22 21 25 25 C 1.38586 * 120.02416 * 359.44694 * 23 22 21 26 26 F 1.35100 * 120.04093 * 180.25295 * 25 23 22 27 27 H 1.08999 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00372 * 1 2 3 29 29 H 1.09008 * 109.47122 * 59.99543 * 1 2 3 30 30 H 1.08996 * 109.47178 * 239.99943 * 2 1 3 31 31 H 1.09006 * 109.46938 * 119.99956 * 2 1 3 32 32 H 1.08995 * 109.47455 * 60.00520 * 6 4 3 33 33 H 1.08998 * 109.47479 * 300.00347 * 6 4 3 34 34 H 0.97001 * 120.00344 * 180.02562 * 12 11 9 35 35 H 1.08006 * 119.96187 * 180.02562 * 21 19 18 36 36 H 1.07998 * 119.95071 * 180.27809 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8572 0.0001 8 1 5.7795 2.2266 -0.8250 9 6 6.0242 4.2405 -0.1628 10 1 6.6119 4.4814 -1.0362 11 6 5.8006 5.1983 0.8034 12 7 5.1840 4.8754 1.9193 13 14 6.3733 6.9548 0.5274 14 1 5.3433 7.6959 -0.2438 15 1 6.5828 7.6190 1.8390 16 1 7.6493 6.9458 -0.2322 17 8 5.8962 2.2976 1.2365 18 6 7.0559 1.5875 1.2090 19 6 7.0289 0.2206 0.9655 20 9 5.8501 -0.4054 0.7560 21 6 8.2093 -0.5000 0.9384 22 6 9.4172 0.1399 1.1480 23 6 9.4478 1.5011 1.3967 24 9 10.6288 2.1229 1.6066 25 6 8.2680 2.2276 1.4248 26 9 8.2979 3.5572 1.6625 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.5845 3.4700 0.8895 33 1 3.5852 3.4690 -0.8904 34 1 5.0263 5.5493 2.5989 35 1 8.1881 -1.5630 0.7486 36 1 10.3378 -0.4241 1.1220 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225872686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:20 Heat of formation + Delta-G solvation = -244.505821 kcal Electronic energy + Delta-G solvation = -27935.889540 eV Core-core repulsion = 23357.125661 eV Total energy + Delta-G solvation = -4578.763880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.36450 -49.64066 -49.39869 -41.33186 -40.12266 -38.34772 -37.28664 -35.04840 -32.90666 -32.13257 -31.00150 -30.29704 -28.08836 -24.86204 -24.07963 -23.74826 -23.18744 -21.55292 -19.66510 -18.95022 -18.89716 -18.56478 -18.14395 -17.62813 -17.45884 -17.11841 -16.95661 -16.66552 -16.37116 -16.23382 -15.83421 -15.38049 -15.18850 -15.13972 -14.95012 -14.82893 -14.11925 -13.95087 -13.62004 -13.60926 -13.37796 -12.97777 -12.81715 -12.72161 -12.59805 -12.49982 -12.45221 -12.37242 -12.00391 -11.50555 -11.39621 -11.27338 -10.68373 -10.32538 -9.71344 -9.50915 -8.16230 -6.39311 -0.20774 -0.11856 1.38633 1.41426 1.42921 1.49267 1.89325 2.12777 2.39250 2.65287 3.04342 3.15744 3.31904 3.50648 3.70674 3.94697 3.99463 4.05137 4.17791 4.39086 4.39629 4.52033 4.54036 4.77431 4.86329 4.90289 4.93670 4.95388 4.99352 5.06523 5.17511 5.34170 5.57260 5.67575 5.71371 5.98792 6.52507 6.98708 7.01564 7.39971 8.85626 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.006693 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.217666 B = 4182.708896 C = 6533.743520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.370 6.370 4 C 0.454 3.546 5 O -0.512 6.512 6 C -0.092 4.092 7 C 0.238 3.762 8 H 0.010 0.990 9 C -0.574 4.574 10 H 0.055 0.945 11 C 0.063 3.937 12 N -0.868 5.868 13 Si 0.938 3.062 14 H -0.261 1.261 15 H -0.285 1.285 16 H -0.277 1.277 17 O -0.319 6.319 18 C 0.056 3.944 19 C 0.073 3.927 20 F -0.112 7.112 21 C -0.114 4.114 22 C -0.093 4.093 23 C 0.049 3.951 24 F -0.133 7.133 25 C 0.048 3.952 26 F -0.127 7.127 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.265 0.735 35 H 0.192 0.808 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -11.395 -2.674 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.288 6.288 4 C 0.298 3.702 5 O -0.401 6.401 6 C -0.129 4.129 7 C 0.184 3.816 8 H 0.028 0.972 9 C -0.611 4.611 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.502 5.502 13 Si 0.763 3.237 14 H -0.186 1.186 15 H -0.211 1.211 16 H -0.202 1.202 17 O -0.236 6.236 18 C 0.008 3.992 19 C 0.052 3.948 20 F -0.091 7.091 21 C -0.132 4.132 22 C -0.111 4.111 23 C 0.029 3.971 24 F -0.111 7.111 25 C 0.027 3.973 26 F -0.105 7.105 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.210 0.790 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.355 -11.545 -2.345 11.786 hybrid contribution 0.306 1.559 0.051 1.590 sum -0.050 -9.986 -2.294 10.246 Atomic orbital electron populations 1.21804 0.90225 1.04335 1.03541 1.23216 0.97165 0.79754 1.02022 1.86532 1.24495 1.33478 1.84309 1.24451 0.80489 0.93568 0.71689 1.90684 1.60335 1.43450 1.45591 1.21544 0.95633 0.89595 1.06150 1.19703 0.89671 0.91624 0.80563 0.97217 1.21496 1.36135 0.96138 1.07310 0.92668 1.25469 0.93451 1.01565 0.93901 1.70091 1.39391 1.34484 1.06238 0.85899 0.79144 0.81017 0.77632 1.18610 1.21077 1.20168 1.86279 1.33900 1.67929 1.35519 1.18995 0.87624 0.90471 1.02087 1.18387 0.83709 0.89698 1.02993 1.91637 1.44523 1.81138 1.91762 1.21335 0.88265 1.02636 1.00977 1.21206 1.00892 0.89778 0.99230 1.17810 0.78916 0.92523 1.07891 1.91487 1.43650 1.83211 1.92793 1.18368 0.93590 0.78891 1.06451 1.91526 1.97029 1.30390 1.91557 0.87875 0.91715 0.91142 0.91418 0.92325 0.87351 0.86528 0.92591 0.79046 0.78239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.29 71.98 0.74 -2.03 16 2 C 0.05 1.46 6.19 71.98 0.45 1.91 16 3 O -0.37 -13.48 10.22 -51.45 -0.53 -14.01 16 4 C 0.45 19.29 7.85 71.23 0.56 19.84 16 5 O -0.51 -23.18 11.36 26.62 0.30 -22.88 16 6 C -0.09 -4.18 5.25 29.85 0.16 -4.03 16 7 C 0.24 12.11 1.87 29.85 0.06 12.17 16 8 H 0.01 0.50 7.66 -2.39 -0.02 0.48 16 9 C -0.57 -30.84 8.03 25.60 0.21 -30.64 16 10 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 11 C 0.06 3.35 4.97 84.65 0.42 3.77 16 12 N -0.87 -48.03 11.17 21.45 0.24 -47.79 16 13 Si 0.94 42.72 29.54 68.60 2.03 44.74 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 O -0.32 -16.92 7.81 -81.53 -0.64 -17.55 16 18 C 0.06 2.58 5.56 22.55 0.13 2.71 16 19 C 0.07 2.78 7.31 22.44 0.16 2.94 16 20 F -0.11 -4.68 13.21 44.97 0.59 -4.09 16 21 C -0.11 -2.98 10.02 22.30 0.22 -2.75 16 22 C -0.09 -2.27 10.02 22.32 0.22 -2.05 16 23 C 0.05 1.69 7.30 22.39 0.16 1.85 16 24 F -0.13 -4.53 17.18 44.97 0.77 -3.76 16 25 C 0.05 2.14 7.31 22.48 0.16 2.30 16 26 F -0.13 -6.54 15.91 44.97 0.72 -5.83 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 31 H 0.06 1.71 8.13 -2.38 -0.02 1.69 16 32 H 0.11 5.42 6.76 -2.39 -0.02 5.40 16 33 H 0.12 4.81 8.14 -2.39 -0.02 4.79 16 34 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -67.77 325.19 8.27 -59.51 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.13 Total: 5.66 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 3.65 Total: 5.99 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.24 Total: -47.79 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.86 Total: -54.44 kcal Atomic # 9 Polarization: -15.76 SS G_CDS: 2.08 Total: -13.68 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -67.77 8.27 -59.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225872686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.997 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds