Wall clock time and date at job start Tue Mar 31 2020 12:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47058 * 2 1 4 4 C 1.34231 * 117.00370 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99290 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00363 * 180.27525 * 4 3 2 7 7 H 1.09002 * 109.47270 * 59.72554 * 6 4 3 8 8 O 1.42902 * 109.47344 * 179.72294 * 6 4 3 9 9 C 1.35636 * 117.00315 * 207.46059 * 8 6 4 10 10 C 1.38454 * 120.26448 * 3.92080 * 9 8 6 11 11 C 1.38311 * 120.04936 * 179.74697 * 10 9 8 12 12 C 1.38819 * 120.59020 * 0.55635 * 11 10 9 13 13 C 1.36495 * 120.54053 * 359.69888 * 12 11 10 14 14 C 1.40724 * 119.92707 * 0.02562 * 13 12 11 15 15 C 1.41148 * 120.28987 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00403 * 153.84935 * 15 14 13 17 17 C 1.39935 * 120.00007 * 333.84796 * 15 14 13 18 18 N 1.30864 * 120.00561 * 161.36467 * 17 15 14 19 19 Si 1.86801 * 119.99801 * 341.36566 * 17 15 14 20 20 H 1.48500 * 109.47340 * 95.36683 * 19 17 15 21 21 H 1.48506 * 109.47231 * 215.36525 * 19 17 15 22 22 H 1.48496 * 109.47338 * 335.36467 * 19 17 15 23 23 C 1.52998 * 109.47351 * 299.72805 * 6 4 3 24 24 F 1.39900 * 109.47260 * 59.99646 * 23 6 4 25 25 F 1.39900 * 109.47492 * 180.02562 * 23 6 4 26 26 F 1.39901 * 109.46730 * 299.99622 * 23 6 4 27 27 H 1.09010 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 299.99537 * 1 2 3 29 29 H 1.08997 * 109.47296 * 60.00182 * 1 2 3 30 30 H 1.08997 * 109.47260 * 239.99532 * 2 1 3 31 31 H 1.09005 * 109.46707 * 119.99764 * 2 1 3 32 32 H 1.07994 * 119.97652 * 0.02562 * 10 9 8 33 33 H 1.07996 * 119.70299 * 180.28049 * 11 10 9 34 34 H 1.08004 * 119.73326 * 179.72299 * 12 11 10 35 35 H 1.07995 * 120.03716 * 179.97438 * 13 12 11 36 36 H 0.96999 * 120.00784 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0068 7 1 3.5810 3.4670 0.8969 8 8 5.3477 2.8626 0.0127 9 6 6.0164 3.8997 0.5757 10 6 5.3207 4.9303 1.1847 11 6 6.0073 5.9831 1.7620 12 6 7.3944 6.0252 1.7281 13 6 8.1043 5.0247 1.1296 14 6 7.4286 3.9400 0.5403 15 6 8.1550 2.9010 -0.0802 16 1 7.7284 1.9114 -0.1511 17 6 9.4281 3.1531 -0.6035 18 7 10.2458 2.1598 -0.8427 19 14 9.9604 4.9077 -0.9607 20 1 10.7274 5.4374 0.1952 21 1 10.8166 4.9280 -2.1740 22 1 8.7604 5.7525 -1.1876 23 6 3.4544 3.6878 -1.2422 24 9 2.0573 3.7610 -1.2480 25 9 3.9895 4.9804 -1.2367 26 9 3.8904 3.0080 -2.3846 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2413 4.9099 1.2128 33 1 5.4591 6.7818 2.2394 34 1 7.9163 6.8561 2.1794 35 1 9.1832 5.0658 1.1077 36 1 11.1285 2.3346 -1.2051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:43 Heat of formation + Delta-G solvation = -239.810668 kcal Electronic energy + Delta-G solvation = -27898.297666 eV Core-core repulsion = 23319.737383 eV Total energy + Delta-G solvation = -4578.560282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97908 -47.49405 -47.42387 -40.70686 -39.21059 -37.03143 -36.32769 -33.72012 -32.22144 -31.01353 -30.24477 -28.85085 -25.19050 -24.76634 -23.39639 -22.14562 -20.98830 -20.72293 -18.80890 -18.54258 -18.41377 -17.61375 -17.25760 -17.06949 -16.53465 -16.23301 -15.31275 -14.54206 -14.39939 -14.29461 -14.15085 -14.08505 -13.88097 -13.83338 -13.75408 -13.54142 -13.50830 -13.43094 -12.99638 -12.55285 -12.28716 -12.21244 -12.03501 -11.79223 -11.72182 -11.25627 -10.86849 -10.72163 -10.69776 -10.56988 -10.27502 -9.87449 -9.69787 -9.23179 -7.85769 -7.42768 -7.02400 -4.48354 1.77237 2.00841 2.42795 2.47236 2.84412 3.06017 3.18674 3.28778 3.49572 3.73225 3.92467 4.00737 4.34821 4.40461 4.62726 4.71016 4.75114 4.78202 5.08312 5.28564 5.42989 5.56937 5.65717 5.74116 5.90323 6.04471 6.19313 6.43767 6.60155 6.77329 7.01898 7.31772 7.41229 7.55189 7.66469 7.84096 7.95981 8.32078 8.59448 8.68879 9.98756 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004813 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.621485 B = 5815.892559 C = 6349.371933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.348 6.348 4 C 0.467 3.533 5 O -0.451 6.451 6 C 0.051 3.949 7 H 0.146 0.854 8 O -0.245 6.245 9 C -0.014 4.014 10 C -0.148 4.148 11 C -0.222 4.222 12 C -0.087 4.087 13 C -0.225 4.225 14 C 0.095 3.905 15 C -0.422 4.422 16 H 0.100 0.900 17 C 0.082 3.918 18 N -0.794 5.794 19 Si 0.912 3.088 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.241 1.241 23 C 0.440 3.560 24 F -0.172 7.172 25 F -0.161 7.161 26 F -0.170 7.170 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 0.707 1.013 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.266 6.266 4 C 0.305 3.695 5 O -0.334 6.334 6 C -0.011 4.011 7 H 0.163 0.837 8 O -0.159 6.159 9 C -0.057 4.057 10 C -0.167 4.167 11 C -0.242 4.242 12 C -0.105 4.105 13 C -0.244 4.244 14 C 0.091 3.909 15 C -0.449 4.449 16 H 0.118 0.882 17 C -0.139 4.139 18 N -0.417 5.417 19 Si 0.739 3.261 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.164 1.164 23 C 0.385 3.615 24 F -0.154 7.154 25 F -0.142 7.142 26 F -0.151 7.151 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.451 0.033 0.788 14.473 hybrid contribution 0.200 0.792 -0.293 0.868 sum -14.252 0.825 0.495 14.284 Atomic orbital electron populations 1.21810 0.92237 1.03034 1.03750 1.23145 0.95496 0.79363 1.03166 1.86491 1.22661 1.33241 1.84212 1.22326 0.81526 0.90624 0.75023 1.90763 1.60133 1.41316 1.41147 1.22472 0.88024 0.92463 0.98161 0.83721 1.86317 1.10338 1.42591 1.76651 1.18999 0.91557 0.89615 1.05485 1.20595 0.97261 0.96300 1.02506 1.20050 0.93741 1.00158 1.10212 1.20324 0.93986 0.97379 0.98802 1.20543 0.98260 0.98206 1.07376 1.17012 0.87490 0.93104 0.93274 1.19490 0.98071 0.97854 1.29480 0.88235 1.26242 0.95095 0.99887 0.92641 1.69704 1.06961 1.34480 1.30540 0.86313 0.79884 0.82460 0.77442 1.19522 1.21737 1.16426 1.20819 0.75450 0.79059 0.86204 1.93222 1.29111 1.96301 1.96717 1.93290 1.85762 1.38528 1.96612 1.93238 1.89320 1.79518 1.53036 0.90049 0.91324 0.91275 0.90752 0.90746 0.88389 0.88319 0.88468 0.87417 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.35 -4.78 9.20 -39.26 -0.36 -5.14 16 4 C 0.47 7.94 7.06 36.00 0.25 8.20 16 5 O -0.45 -9.08 16.25 -25.48 -0.41 -9.50 16 6 C 0.05 0.89 2.39 -27.89 -0.07 0.82 16 7 H 0.15 2.12 5.71 -51.93 -0.30 1.83 16 8 O -0.25 -5.53 8.57 -38.56 -0.33 -5.86 16 9 C -0.01 -0.32 6.24 -38.33 -0.24 -0.56 16 10 C -0.15 -3.00 7.70 -39.48 -0.30 -3.30 16 11 C -0.22 -4.42 10.04 -39.34 -0.39 -4.82 16 12 C -0.09 -1.81 9.97 -40.00 -0.40 -2.21 16 13 C -0.22 -5.31 7.09 -39.27 -0.28 -5.59 16 14 C 0.09 2.42 5.21 -106.68 -0.56 1.87 16 15 C -0.42 -11.63 9.24 -37.84 -0.35 -11.98 16 16 H 0.10 2.98 7.83 -52.49 -0.41 2.57 16 17 C 0.08 2.15 5.42 -17.33 -0.09 2.06 16 18 N -0.79 -21.18 13.93 55.55 0.77 -20.40 16 19 Si 0.91 20.63 24.43 -169.99 -4.15 16.48 16 20 H -0.27 -5.79 6.67 56.52 0.38 -5.41 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.24 -5.60 6.77 56.52 0.38 -5.21 16 23 C 0.44 7.46 2.84 37.16 0.11 7.57 16 24 F -0.17 -2.51 16.22 2.25 0.04 -2.48 16 25 F -0.16 -2.90 14.99 2.25 0.03 -2.87 16 26 F -0.17 -3.15 16.97 2.25 0.04 -3.11 16 27 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.10 1.66 5.47 -52.49 -0.29 1.37 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.11 2.51 4.25 -52.49 -0.22 2.29 16 36 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -29.73 319.13 -4.63 -34.36 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.35 Total: 1.51 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.71 Total: -7.80 kcal Atomic # 7 Polarization: -21.18 SS G_CDS: 0.77 Total: -20.40 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.11 Total: -20.50 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.11 Total: -8.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.15 Total: 16.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.73 -4.63 -34.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.449 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds