Wall clock time and date at job start Tue Mar 31 2020 12:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47058 * 2 1 4 4 C 1.34231 * 117.00370 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99290 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00363 * 180.27525 * 4 3 2 7 7 H 1.09002 * 109.47270 * 59.72554 * 6 4 3 8 8 O 1.42902 * 109.47344 * 179.72294 * 6 4 3 9 9 C 1.35636 * 117.00315 * 207.46059 * 8 6 4 10 10 C 1.38454 * 120.26448 * 3.92080 * 9 8 6 11 11 C 1.38311 * 120.04936 * 179.74697 * 10 9 8 12 12 C 1.38819 * 120.59020 * 0.55635 * 11 10 9 13 13 C 1.36495 * 120.54053 * 359.69888 * 12 11 10 14 14 C 1.40724 * 119.92707 * 0.02562 * 13 12 11 15 15 C 1.41148 * 120.28987 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00403 * 153.84935 * 15 14 13 17 17 C 1.39935 * 120.00007 * 333.84796 * 15 14 13 18 18 N 1.30864 * 120.00561 * 161.36467 * 17 15 14 19 19 Si 1.86801 * 119.99801 * 341.36566 * 17 15 14 20 20 H 1.48500 * 109.47340 * 95.36683 * 19 17 15 21 21 H 1.48506 * 109.47231 * 215.36525 * 19 17 15 22 22 H 1.48496 * 109.47338 * 335.36467 * 19 17 15 23 23 C 1.52998 * 109.47351 * 299.72805 * 6 4 3 24 24 F 1.39900 * 109.47260 * 59.99646 * 23 6 4 25 25 F 1.39900 * 109.47492 * 180.02562 * 23 6 4 26 26 F 1.39901 * 109.46730 * 299.99622 * 23 6 4 27 27 H 1.09010 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 299.99537 * 1 2 3 29 29 H 1.08997 * 109.47296 * 60.00182 * 1 2 3 30 30 H 1.08997 * 109.47260 * 239.99532 * 2 1 3 31 31 H 1.09005 * 109.46707 * 119.99764 * 2 1 3 32 32 H 1.07994 * 119.97652 * 0.02562 * 10 9 8 33 33 H 1.07996 * 119.70299 * 180.28049 * 11 10 9 34 34 H 1.08004 * 119.73326 * 179.72299 * 12 11 10 35 35 H 1.07995 * 120.03716 * 179.97438 * 13 12 11 36 36 H 0.96999 * 120.00784 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0068 7 1 3.5810 3.4670 0.8969 8 8 5.3477 2.8626 0.0127 9 6 6.0164 3.8997 0.5757 10 6 5.3207 4.9303 1.1847 11 6 6.0073 5.9831 1.7620 12 6 7.3944 6.0252 1.7281 13 6 8.1043 5.0247 1.1296 14 6 7.4286 3.9400 0.5403 15 6 8.1550 2.9010 -0.0802 16 1 7.7284 1.9114 -0.1511 17 6 9.4281 3.1531 -0.6035 18 7 10.2458 2.1598 -0.8427 19 14 9.9604 4.9077 -0.9607 20 1 10.7274 5.4374 0.1952 21 1 10.8166 4.9280 -2.1740 22 1 8.7604 5.7525 -1.1876 23 6 3.4544 3.6878 -1.2422 24 9 2.0573 3.7610 -1.2480 25 9 3.9895 4.9804 -1.2367 26 9 3.8904 3.0080 -2.3846 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2413 4.9099 1.2128 33 1 5.4591 6.7818 2.2394 34 1 7.9163 6.8561 2.1794 35 1 9.1832 5.0658 1.1077 36 1 11.1285 2.3346 -1.2051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:42 Heat of formation + Delta-G solvation = -256.992866 kcal Electronic energy + Delta-G solvation = -27899.042742 eV Core-core repulsion = 23319.737383 eV Total energy + Delta-G solvation = -4579.305358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.36242 -48.86608 -48.82167 -42.06717 -40.81870 -38.56140 -37.78465 -35.57662 -33.31546 -32.51701 -31.74510 -30.51581 -27.02273 -26.08155 -24.57629 -23.48928 -22.65061 -22.19117 -20.28629 -19.89800 -19.83365 -19.39488 -18.70198 -18.54684 -17.86848 -17.56936 -16.96635 -16.13921 -15.87582 -15.71136 -15.62412 -15.56216 -15.40713 -15.22502 -15.16243 -14.94651 -14.91258 -14.80871 -14.31137 -13.88105 -13.79770 -13.64307 -13.42250 -13.08210 -12.95789 -12.67757 -12.58037 -12.31126 -12.12642 -11.87716 -11.66286 -11.62808 -11.52525 -11.01121 -9.63102 -9.15424 -8.92335 -6.45240 0.40050 0.68562 0.72304 0.76610 1.24112 1.39017 1.46175 1.48976 2.00828 2.10192 2.33822 2.57845 2.68449 3.06516 3.31131 3.35646 3.44485 3.95909 4.00139 4.09520 4.28392 4.30487 4.44064 4.67502 4.73420 4.91709 4.95051 4.99173 5.03074 5.21802 5.29113 5.61142 5.66937 5.92789 6.08018 6.14130 6.28458 6.36130 6.72340 6.81230 8.16724 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004813 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.621485 B = 5815.892559 C = 6349.371933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.337 6.337 4 C 0.474 3.526 5 O -0.493 6.493 6 C 0.043 3.957 7 H 0.180 0.820 8 O -0.279 6.279 9 C -0.021 4.021 10 C -0.150 4.150 11 C -0.193 4.193 12 C -0.095 4.095 13 C -0.231 4.231 14 C 0.065 3.935 15 C -0.468 4.468 16 H 0.047 0.953 17 C 0.042 3.958 18 N -0.846 5.846 19 Si 0.969 3.031 20 H -0.248 1.248 21 H -0.280 1.280 22 H -0.250 1.250 23 C 0.447 3.553 24 F -0.153 7.153 25 F -0.165 7.165 26 F -0.183 7.183 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 3.854 2.422 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.254 6.254 4 C 0.314 3.686 5 O -0.379 6.379 6 C -0.018 4.018 7 H 0.196 0.804 8 O -0.193 6.193 9 C -0.064 4.064 10 C -0.168 4.168 11 C -0.212 4.212 12 C -0.113 4.113 13 C -0.250 4.250 14 C 0.062 3.938 15 C -0.497 4.497 16 H 0.065 0.935 17 C -0.172 4.172 18 N -0.472 5.472 19 Si 0.792 3.208 20 H -0.173 1.173 21 H -0.207 1.207 22 H -0.173 1.173 23 C 0.392 3.608 24 F -0.134 7.134 25 F -0.146 7.146 26 F -0.165 7.165 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.111 3.188 2.209 17.545 hybrid contribution 0.636 -0.120 -0.589 0.875 sum -16.475 3.068 1.620 16.836 Atomic orbital electron populations 1.21850 0.89125 1.04818 1.04188 1.23583 0.97785 0.77766 1.03262 1.86502 1.20362 1.35283 1.83256 1.22307 0.82349 0.89958 0.73978 1.90758 1.61322 1.42474 1.43363 1.22797 0.85794 0.93488 0.99733 0.80369 1.86278 1.13140 1.42970 1.76894 1.19254 0.91360 0.90427 1.05402 1.21051 0.99370 0.95150 1.01276 1.20728 0.93653 1.00016 1.06797 1.20792 0.94849 0.97603 0.98086 1.20730 0.98642 0.98324 1.07285 1.17269 0.89029 0.93583 0.93943 1.19284 0.99834 0.96746 1.33882 0.93463 1.26957 0.94643 1.03566 0.92056 1.69747 1.07846 1.36283 1.33349 0.85461 0.79315 0.77727 0.78280 1.17268 1.20666 1.17312 1.20596 0.76162 0.78601 0.85411 1.93262 1.27376 1.96182 1.96581 1.93276 1.86012 1.38711 1.96578 1.93217 1.89632 1.79850 1.53783 0.87577 0.90550 0.91100 0.91148 0.90418 0.84525 0.83730 0.84606 0.87602 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 10.29 71.98 0.74 -1.00 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.34 -8.79 9.20 -51.43 -0.47 -9.26 16 4 C 0.47 16.09 7.06 71.23 0.50 16.59 16 5 O -0.49 -20.69 16.25 28.39 0.46 -20.23 16 6 C 0.04 1.46 2.39 29.84 0.07 1.53 16 7 H 0.18 4.68 5.71 -2.39 -0.01 4.66 16 8 O -0.28 -12.87 8.57 -70.42 -0.60 -13.48 16 9 C -0.02 -0.99 6.24 23.08 0.14 -0.85 16 10 C -0.15 -5.51 7.70 22.34 0.17 -5.34 16 11 C -0.19 -6.60 10.04 22.43 0.23 -6.37 16 12 C -0.10 -3.58 9.97 22.00 0.22 -3.36 16 13 C -0.23 -10.61 7.09 22.47 0.16 -10.45 16 14 C 0.06 3.38 5.21 -21.20 -0.11 3.26 16 15 C -0.47 -27.79 9.24 23.40 0.22 -27.57 16 16 H 0.05 3.16 7.83 -2.91 -0.02 3.14 16 17 C 0.04 2.35 5.42 85.25 0.46 2.81 16 18 N -0.85 -48.32 13.93 21.83 0.30 -48.02 16 19 Si 0.97 43.29 24.43 68.60 1.68 44.96 16 20 H -0.25 -10.06 6.67 99.48 0.66 -9.40 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.25 -11.29 6.77 99.48 0.67 -10.61 16 23 C 0.45 14.51 2.84 71.98 0.20 14.72 16 24 F -0.15 -4.05 16.22 44.97 0.73 -3.32 16 25 F -0.16 -5.56 14.99 44.97 0.67 -4.89 16 26 F -0.18 -6.84 16.97 44.97 0.76 -6.07 16 27 H 0.11 0.81 8.14 -2.38 -0.02 0.80 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.08 1.53 8.13 -2.38 -0.02 1.51 16 32 H 0.14 3.89 5.47 -2.91 -0.02 3.88 16 33 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.11 4.83 4.25 -2.91 -0.01 4.82 16 36 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 Total: -1.00 -70.16 319.13 8.05 -62.11 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.07 Total: 12.81 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 3.45 Total: -14.61 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.30 Total: -48.02 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.62 Total: -42.97 kcal Atomic # 9 Polarization: -16.45 SS G_CDS: 2.17 Total: -14.28 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.68 Total: 44.96 kcal Total: -70.16 8.05 -62.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.883 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds