Wall clock time and date at job start Tue Mar 31 2020 12:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47487 * 2 1 4 4 C 1.34221 * 117.00144 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00247 * 359.97438 * 4 3 2 6 6 C 1.50708 * 120.00101 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.46648 * 304.99784 * 6 4 3 8 8 O 1.42899 * 109.47209 * 185.00311 * 6 4 3 9 9 C 1.35638 * 116.99938 * 152.53789 * 8 6 4 10 10 C 1.38435 * 120.26998 * 356.10270 * 9 8 6 11 11 C 1.38310 * 120.05434 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.59158 * 359.97305 * 11 10 9 13 13 C 1.36494 * 120.53555 * 0.02562 * 12 11 10 14 14 C 1.40724 * 119.93037 * 0.27795 * 13 12 11 15 15 C 1.41156 * 120.28807 * 179.70292 * 14 13 12 16 16 H 1.07993 * 119.99712 * 153.89567 * 15 14 13 17 17 C 1.39937 * 119.99986 * 333.88877 * 15 14 13 18 18 N 1.30865 * 119.99879 * 161.34355 * 17 15 14 19 19 Si 1.86800 * 120.00132 * 341.34244 * 17 15 14 20 20 H 1.48497 * 109.47082 * 95.36155 * 19 17 15 21 21 H 1.48501 * 109.47122 * 215.36522 * 19 17 15 22 22 H 1.48502 * 109.47079 * 335.36393 * 19 17 15 23 23 C 1.53003 * 109.47214 * 64.99424 * 6 4 3 24 24 F 1.39895 * 109.46918 * 180.02562 * 23 6 4 25 25 F 1.39896 * 109.47129 * 300.00746 * 23 6 4 26 26 F 1.39907 * 109.46452 * 60.00521 * 23 6 4 27 27 H 1.08999 * 109.46728 * 59.99582 * 1 2 3 28 28 H 1.08996 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46869 * 300.00301 * 1 2 3 30 30 H 1.08994 * 109.47058 * 239.99776 * 2 1 3 31 31 H 1.09003 * 109.46678 * 119.99901 * 2 1 3 32 32 H 1.08006 * 119.97381 * 359.97438 * 10 9 8 33 33 H 1.07997 * 119.70567 * 179.97438 * 11 10 9 34 34 H 1.07999 * 119.72993 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.03547 * 180.02562 * 13 12 11 36 36 H 0.97005 * 119.99573 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 1 3.5154 3.4986 -0.8407 8 8 5.3432 2.8645 -0.1158 9 6 5.9688 3.9222 -0.6900 10 6 5.2307 4.9736 -1.2059 11 6 5.8732 6.0497 -1.7909 12 6 7.2587 6.0890 -1.8670 13 6 8.0101 5.0655 -1.3661 14 6 7.3793 3.9568 -0.7719 15 6 8.1488 2.8913 -0.2570 16 1 7.7546 2.2753 0.5376 17 6 9.4223 2.6331 -0.7764 18 7 10.2749 1.9145 -0.0914 19 14 9.9052 3.3142 -2.4474 20 1 10.6346 4.5952 -2.2679 21 1 10.7815 2.3391 -3.1449 22 1 8.6834 3.5497 -3.2579 23 6 3.5519 3.6413 1.3085 24 9 4.0862 4.9342 1.3088 25 9 2.1595 3.7125 1.4230 26 9 4.0725 2.9209 2.3890 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.1522 4.9532 -1.1524 33 1 5.2918 6.8666 -2.1920 34 1 7.7460 6.9363 -2.3264 35 1 9.0876 5.1047 -1.4293 36 1 11.1576 1.7353 -0.4516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:46 Heat of formation + Delta-G solvation = -239.848687 kcal Electronic energy + Delta-G solvation = -27848.064903 eV Core-core repulsion = 23269.502972 eV Total energy + Delta-G solvation = -4578.561931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.99616 -47.51140 -47.44151 -40.70329 -39.20976 -37.03117 -36.32590 -33.72260 -32.21609 -31.01530 -30.24632 -28.85137 -25.19423 -24.78408 -23.38974 -22.14424 -20.99167 -20.72149 -18.82047 -18.53618 -18.42000 -17.60565 -17.29468 -17.06219 -16.54016 -16.23992 -15.27435 -14.57027 -14.42528 -14.29875 -14.17417 -14.07528 -13.97336 -13.85952 -13.66851 -13.55906 -13.50236 -13.40086 -12.99399 -12.63360 -12.27712 -12.19729 -12.03231 -11.78728 -11.70416 -11.17483 -10.98554 -10.81416 -10.69724 -10.49496 -10.23075 -9.87653 -9.72366 -9.23239 -7.85943 -7.42657 -7.02772 -4.48570 1.77379 1.99716 2.42807 2.47308 2.84546 3.05452 3.18073 3.27218 3.49097 3.72456 3.91529 4.00912 4.34692 4.40241 4.61290 4.71007 4.75082 4.78002 5.08326 5.28611 5.42940 5.56804 5.65781 5.73978 5.90400 6.04454 6.19476 6.43734 6.60215 6.77217 7.01733 7.31844 7.41123 7.55739 7.66462 7.84150 7.95912 8.31539 8.59389 8.68381 9.98497 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.004873 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.237048 B = 5744.694048 C = 6460.698634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.348 6.348 4 C 0.466 3.534 5 O -0.450 6.450 6 C 0.050 3.950 7 H 0.145 0.855 8 O -0.245 6.245 9 C -0.014 4.014 10 C -0.148 4.148 11 C -0.222 4.222 12 C -0.087 4.087 13 C -0.224 4.224 14 C 0.094 3.906 15 C -0.420 4.420 16 H 0.099 0.901 17 C 0.081 3.919 18 N -0.794 5.794 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.242 1.242 23 C 0.440 3.560 24 F -0.160 7.160 25 F -0.173 7.173 26 F -0.170 7.170 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 0.155 -1.185 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.266 6.266 4 C 0.305 3.695 5 O -0.332 6.332 6 C -0.012 4.012 7 H 0.162 0.838 8 O -0.159 6.159 9 C -0.057 4.057 10 C -0.166 4.166 11 C -0.242 4.242 12 C -0.105 4.105 13 C -0.243 4.243 14 C 0.091 3.909 15 C -0.448 4.448 16 H 0.117 0.883 17 C -0.139 4.139 18 N -0.417 5.417 19 Si 0.741 3.259 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.165 1.165 23 C 0.385 3.615 24 F -0.142 7.142 25 F -0.154 7.154 26 F -0.151 7.151 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.486 -0.524 -0.992 14.529 hybrid contribution 0.189 0.385 -0.447 0.620 sum -14.296 -0.139 -1.439 14.369 Atomic orbital electron populations 1.21810 0.92239 1.03040 1.03746 1.23145 0.95491 0.79367 1.03172 1.86482 1.22677 1.33243 1.84222 1.22314 0.81516 0.90617 0.75099 1.90764 1.60108 1.41348 1.40996 1.22470 0.88693 0.93001 0.97014 0.83778 1.86327 1.11534 1.40789 1.77208 1.19023 0.91975 0.88646 1.06093 1.20598 0.97106 0.95660 1.03273 1.20050 0.93957 0.99547 1.10611 1.20323 0.93842 0.97457 0.98878 1.20531 0.98272 0.95589 1.09957 1.17025 0.87590 0.93692 0.92640 1.19478 0.97481 1.11250 1.16545 0.88332 1.26251 0.94993 0.93085 0.99577 1.69710 1.05877 1.29244 1.36835 0.86285 0.79799 0.77792 0.82008 1.19525 1.21770 1.16533 1.20824 0.74896 0.78579 0.87216 1.93289 1.85846 1.38356 1.96665 1.93221 1.29408 1.96296 1.96498 1.93242 1.86508 1.77494 1.57864 0.91321 0.90047 0.91278 0.90730 0.90764 0.88366 0.88320 0.88467 0.87417 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.35 -4.78 9.39 -39.23 -0.37 -5.15 16 4 C 0.47 7.96 6.99 36.01 0.25 8.21 16 5 O -0.45 -9.09 16.26 -25.46 -0.41 -9.50 16 6 C 0.05 0.88 2.38 -27.88 -0.07 0.81 16 7 H 0.15 2.12 5.71 -51.93 -0.30 1.82 16 8 O -0.25 -5.52 8.58 -38.52 -0.33 -5.86 16 9 C -0.01 -0.34 6.24 -38.34 -0.24 -0.58 16 10 C -0.15 -2.99 7.69 -39.48 -0.30 -3.30 16 11 C -0.22 -4.42 10.04 -39.34 -0.39 -4.82 16 12 C -0.09 -1.82 9.97 -40.00 -0.40 -2.21 16 13 C -0.22 -5.30 7.09 -39.27 -0.28 -5.58 16 14 C 0.09 2.41 5.21 -106.68 -0.56 1.85 16 15 C -0.42 -11.59 9.24 -37.84 -0.35 -11.94 16 16 H 0.10 2.95 7.83 -52.49 -0.41 2.54 16 17 C 0.08 2.14 5.42 -17.33 -0.09 2.04 16 18 N -0.79 -21.16 13.93 55.55 0.77 -20.38 16 19 Si 0.91 20.52 24.43 -169.99 -4.15 16.37 16 20 H -0.27 -5.76 6.67 56.52 0.38 -5.38 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.24 -5.54 6.77 56.52 0.38 -5.16 16 23 C 0.44 7.44 2.85 37.16 0.11 7.54 16 24 F -0.16 -2.87 14.98 2.25 0.03 -2.84 16 25 F -0.17 -2.52 16.36 2.25 0.04 -2.48 16 26 F -0.17 -3.15 16.97 2.25 0.04 -3.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.10 1.66 5.47 -52.48 -0.29 1.37 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.11 2.51 4.26 -52.49 -0.22 2.29 16 36 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -29.72 319.40 -4.63 -34.35 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -3.35 Total: 1.60 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.71 Total: -7.81 kcal Atomic # 7 Polarization: -21.16 SS G_CDS: 0.77 Total: -20.38 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.11 Total: -20.51 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 0.11 Total: -8.43 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.15 Total: 16.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.72 -4.63 -34.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.496 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds