Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47243 * 281.39723 * 3 2 1 5 5 N 1.46900 * 109.47053 * 174.87520 * 4 3 2 6 6 C 1.46907 * 111.00089 * 199.77592 * 5 4 3 7 7 C 1.50708 * 109.46817 * 66.04588 * 6 5 4 8 8 H 1.08001 * 119.99808 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99803 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00172 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47274 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47516 * 119.99702 * 11 9 7 14 14 H 1.48502 * 109.47210 * 239.99217 * 11 9 7 15 15 C 1.46897 * 111.00164 * 75.82384 * 5 4 3 16 16 C 1.50699 * 109.47181 * 199.49099 * 15 5 4 17 17 C 1.34254 * 126.52687 * 254.86783 * 16 15 5 18 18 N 1.36988 * 109.94661 * 180.02562 * 17 16 15 19 19 H 0.97004 * 125.04852 * 179.97438 * 18 17 16 20 20 C 1.37078 * 109.91229 * 359.97438 * 18 17 16 21 21 C 1.39318 * 134.62160 * 179.97438 * 20 18 17 22 22 C 1.37838 * 118.86626 * 180.02562 * 21 20 18 23 23 Cl 1.73601 * 119.26322 * 180.02562 * 22 21 20 24 24 N 1.32401 * 121.46684 * 359.72491 * 22 21 20 25 25 C 1.31711 * 122.21580 * 0.57620 * 24 22 21 26 26 C 1.39300 * 120.15011 * 359.43079 * 25 24 22 27 27 H 1.09000 * 109.46764 * 161.40196 * 3 2 1 28 28 H 1.08999 * 109.47525 * 41.40313 * 3 2 1 29 29 H 1.09001 * 109.47317 * 54.87567 * 4 3 2 30 30 H 1.09000 * 109.47393 * 294.87782 * 4 3 2 31 31 H 1.08990 * 109.47218 * 186.04432 * 6 5 4 32 32 H 1.09002 * 109.47023 * 306.05317 * 6 5 4 33 33 H 0.97000 * 120.00345 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47032 * 79.49206 * 15 5 4 35 35 H 1.08992 * 109.47376 * 319.49450 * 15 5 4 36 36 H 1.07997 * 125.02357 * 0.03641 * 17 16 15 37 37 H 1.08003 * 120.56461 * 0.02566 * 21 20 18 38 38 H 1.08000 * 119.92097 * 179.70834 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.2842 1.4140 5 7 4.5820 -0.4051 1.3913 6 6 5.0695 -1.1216 2.5776 7 6 4.5910 -2.5500 2.5336 8 1 3.9856 -2.8914 1.7070 9 6 4.9259 -3.4207 3.5488 10 7 5.6635 -3.0050 4.5552 11 14 4.3334 -5.1914 3.4939 12 1 3.5266 -5.4056 2.2657 13 1 5.5040 -6.1051 3.4834 14 1 3.4980 -5.4711 4.6894 15 6 5.2176 0.9141 1.2750 16 6 6.6317 0.7487 0.7813 17 6 7.7520 0.8656 1.5118 18 7 8.8498 0.6479 0.7220 19 1 9.7703 0.6791 1.0266 20 6 8.4547 0.3793 -0.5629 21 6 9.1214 0.0907 -1.7517 22 6 8.3810 -0.1321 -2.8927 23 17 9.2012 -0.4932 -4.3795 24 7 7.0580 -0.0827 -2.8787 25 6 6.3771 0.1911 -1.7850 26 6 7.0452 0.4296 -0.5862 27 1 2.9709 0.9748 -0.3278 28 1 2.9718 -0.7700 -0.6796 29 1 2.6823 -1.2150 1.7770 30 1 2.8313 0.5334 2.0753 31 1 6.1592 -1.1037 2.5905 32 1 4.6874 -0.6379 3.4766 33 1 5.8995 -3.6177 5.2692 34 1 5.2279 1.3997 2.2508 35 1 4.6560 1.5271 0.5701 36 1 7.7830 1.0970 2.5663 37 1 10.2001 0.0425 -1.7786 38 1 5.2981 0.2265 -1.8168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232823684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = 90.562887 kcal Electronic energy + Delta-G solvation = -23421.976288 eV Core-core repulsion = 19904.893485 eV Total energy + Delta-G solvation = -3517.082803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50398 -38.23497 -37.44143 -36.39447 -36.06611 -32.84179 -32.45636 -31.04501 -30.48504 -29.21378 -27.17631 -24.94499 -23.73824 -23.12028 -22.44307 -20.59872 -19.35131 -18.23991 -17.28883 -16.89436 -16.43439 -15.81027 -15.08536 -15.06565 -14.87292 -14.64071 -14.49387 -14.18962 -13.68024 -13.54821 -13.26234 -13.06826 -12.90328 -12.37339 -12.19468 -12.02797 -11.78927 -11.43548 -11.33638 -11.28566 -11.19927 -11.02982 -10.73539 -10.63752 -10.35208 -10.00815 -9.59652 -9.56957 -9.25144 -8.68966 -8.50762 -7.70797 -7.41529 -6.10316 -4.10550 0.87702 1.52553 1.86103 2.67113 2.99313 3.03002 3.10905 3.27439 3.36059 3.40653 3.87898 4.21898 4.39458 4.56093 4.78750 4.87989 5.05118 5.07617 5.25767 5.29867 5.35087 5.38526 5.54279 5.54810 5.66617 5.76865 5.84654 5.93983 6.20479 6.29305 6.46026 6.52546 6.67527 6.94302 7.16554 7.21589 7.43790 7.71492 7.80540 7.95989 7.97037 8.06318 8.42651 8.97094 9.54371 11.00414 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009489 B = 0.004191 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.955338 B = 6679.293496 C = 7811.433501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.219 3.781 3 C -0.029 4.029 4 C 0.065 3.935 5 N -0.529 5.529 6 C 0.196 3.804 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.058 3.942 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.118 3.882 16 C -0.118 4.118 17 C 0.058 3.942 18 N -0.583 5.583 19 H 0.418 0.582 20 C 0.132 3.868 21 C -0.166 4.166 22 C 0.173 3.827 23 Cl -0.045 7.045 24 N -0.503 5.503 25 C 0.192 3.808 26 C -0.134 4.134 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.032 0.968 31 H 0.036 0.964 32 H -0.008 1.008 33 H 0.260 0.740 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.136 0.864 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 10.747 -8.972 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.099 4.099 3 C -0.069 4.069 4 C -0.065 4.065 5 N -0.253 5.253 6 C 0.071 3.929 7 C -0.545 4.545 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.720 3.280 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.011 4.011 16 C -0.126 4.126 17 C -0.067 4.067 18 N -0.186 5.186 19 H 0.255 0.745 20 C 0.016 3.984 21 C -0.191 4.191 22 C 0.015 3.985 23 Cl -0.017 7.017 24 N -0.216 5.216 25 C 0.028 3.972 26 C -0.142 4.142 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.010 0.990 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.192 0.808 37 H 0.153 0.847 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.670 10.213 -10.077 15.822 hybrid contribution 1.169 -0.616 1.697 2.151 sum 7.839 9.596 -8.380 14.958 Atomic orbital electron populations 1.81172 1.13314 1.09718 1.09201 1.29361 0.95438 0.92466 0.92624 1.19456 0.80544 1.05057 1.01878 1.21894 0.89999 1.02519 0.92104 1.62021 1.03052 1.15083 1.45154 1.19736 0.96232 0.92861 0.84027 1.21201 1.32223 0.94659 1.06448 0.91684 1.24932 0.95270 0.98725 0.95424 1.69943 1.37718 1.35522 1.10645 0.86530 0.78562 0.84876 0.78025 1.19552 1.21102 1.21158 1.20433 0.89738 0.92067 0.98816 1.20097 0.94885 1.07118 0.90529 1.21839 0.84840 1.03417 0.96615 1.41585 1.09151 1.61581 1.06274 0.74508 1.18025 0.93900 1.00426 0.86018 1.20365 1.00478 1.08730 0.89483 1.20829 0.89745 1.00979 0.86919 1.98373 1.76267 1.93039 1.33980 1.67024 1.06932 1.17001 1.30593 1.22113 0.99689 0.90627 0.84780 1.20032 0.92148 1.06356 0.95617 0.88161 0.86503 0.88553 0.95014 0.94632 0.99046 0.93047 0.94186 0.90829 0.80771 0.84663 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.55 18.54 42.16 0.78 -6.77 16 2 C 0.22 3.02 15.43 -20.76 -0.32 2.70 16 3 C -0.03 -0.33 5.75 -29.52 -0.17 -0.50 16 4 C 0.06 0.97 4.75 -3.83 -0.02 0.95 16 5 N -0.53 -8.89 4.35 -237.52 -1.03 -9.92 16 6 C 0.20 4.36 4.55 -4.97 -0.02 4.33 16 7 C -0.51 -12.88 8.23 -34.44 -0.28 -13.16 16 8 H 0.06 1.65 7.31 -52.49 -0.38 1.26 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -24.96 13.29 55.43 0.74 -24.23 16 11 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.12 1.58 5.35 -4.98 -0.03 1.55 16 16 C -0.12 -1.61 5.17 -102.75 -0.53 -2.15 16 17 C 0.06 0.71 11.30 -16.65 -0.19 0.53 16 18 N -0.58 -6.40 6.05 -10.61 -0.06 -6.47 16 19 H 0.42 3.21 8.96 -40.82 -0.37 2.84 16 20 C 0.13 1.72 7.34 -84.05 -0.62 1.11 16 21 C -0.17 -2.04 9.88 -39.33 -0.39 -2.43 16 22 C 0.17 2.36 7.26 -17.45 -0.13 2.24 16 23 Cl -0.04 -0.54 29.08 -51.86 -1.51 -2.05 16 24 N -0.50 -7.41 10.31 -10.16 -0.10 -7.51 16 25 C 0.19 2.62 11.27 -17.21 -0.19 2.42 16 26 C -0.13 -1.88 6.39 -105.16 -0.67 -2.55 16 27 H 0.10 0.85 6.90 -51.93 -0.36 0.50 16 28 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.10 1.73 6.57 -51.93 -0.34 1.39 16 30 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 31 H 0.04 0.85 7.07 -51.93 -0.37 0.49 16 32 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.04 0.53 7.99 -51.93 -0.41 0.12 16 35 H 0.07 0.79 6.57 -51.93 -0.34 0.44 16 36 H 0.18 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -31.34 348.73 -8.85 -40.19 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.24 Total: -0.82 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.66 Total: -3.52 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.32 Total: -54.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.34 -8.85 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232823684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.756 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds