Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47243 * 281.39723 * 3 2 1 5 5 N 1.46900 * 109.47053 * 174.87520 * 4 3 2 6 6 C 1.46907 * 111.00089 * 199.77592 * 5 4 3 7 7 C 1.50708 * 109.46817 * 66.04588 * 6 5 4 8 8 H 1.08001 * 119.99808 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99803 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00172 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47274 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47516 * 119.99702 * 11 9 7 14 14 H 1.48502 * 109.47210 * 239.99217 * 11 9 7 15 15 C 1.46897 * 111.00164 * 75.82384 * 5 4 3 16 16 C 1.50699 * 109.47181 * 199.49099 * 15 5 4 17 17 C 1.34254 * 126.52687 * 254.86783 * 16 15 5 18 18 N 1.36988 * 109.94661 * 180.02562 * 17 16 15 19 19 H 0.97004 * 125.04852 * 179.97438 * 18 17 16 20 20 C 1.37078 * 109.91229 * 359.97438 * 18 17 16 21 21 C 1.39318 * 134.62160 * 179.97438 * 20 18 17 22 22 C 1.37838 * 118.86626 * 180.02562 * 21 20 18 23 23 Cl 1.73601 * 119.26322 * 180.02562 * 22 21 20 24 24 N 1.32401 * 121.46684 * 359.72491 * 22 21 20 25 25 C 1.31711 * 122.21580 * 0.57620 * 24 22 21 26 26 C 1.39300 * 120.15011 * 359.43079 * 25 24 22 27 27 H 1.09000 * 109.46764 * 161.40196 * 3 2 1 28 28 H 1.08999 * 109.47525 * 41.40313 * 3 2 1 29 29 H 1.09001 * 109.47317 * 54.87567 * 4 3 2 30 30 H 1.09000 * 109.47393 * 294.87782 * 4 3 2 31 31 H 1.08990 * 109.47218 * 186.04432 * 6 5 4 32 32 H 1.09002 * 109.47023 * 306.05317 * 6 5 4 33 33 H 0.97000 * 120.00345 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47032 * 79.49206 * 15 5 4 35 35 H 1.08992 * 109.47376 * 319.49450 * 15 5 4 36 36 H 1.07997 * 125.02357 * 0.03641 * 17 16 15 37 37 H 1.08003 * 120.56461 * 0.02566 * 21 20 18 38 38 H 1.08000 * 119.92097 * 179.70834 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.2842 1.4140 5 7 4.5820 -0.4051 1.3913 6 6 5.0695 -1.1216 2.5776 7 6 4.5910 -2.5500 2.5336 8 1 3.9856 -2.8914 1.7070 9 6 4.9259 -3.4207 3.5488 10 7 5.6635 -3.0050 4.5552 11 14 4.3334 -5.1914 3.4939 12 1 3.5266 -5.4056 2.2657 13 1 5.5040 -6.1051 3.4834 14 1 3.4980 -5.4711 4.6894 15 6 5.2176 0.9141 1.2750 16 6 6.6317 0.7487 0.7813 17 6 7.7520 0.8656 1.5118 18 7 8.8498 0.6479 0.7220 19 1 9.7703 0.6791 1.0266 20 6 8.4547 0.3793 -0.5629 21 6 9.1214 0.0907 -1.7517 22 6 8.3810 -0.1321 -2.8927 23 17 9.2012 -0.4932 -4.3795 24 7 7.0580 -0.0827 -2.8787 25 6 6.3771 0.1911 -1.7850 26 6 7.0452 0.4296 -0.5862 27 1 2.9709 0.9748 -0.3278 28 1 2.9718 -0.7700 -0.6796 29 1 2.6823 -1.2150 1.7770 30 1 2.8313 0.5334 2.0753 31 1 6.1592 -1.1037 2.5905 32 1 4.6874 -0.6379 3.4766 33 1 5.8995 -3.6177 5.2692 34 1 5.2279 1.3997 2.2508 35 1 4.6560 1.5271 0.5701 36 1 7.7830 1.0970 2.5663 37 1 10.2001 0.0425 -1.7786 38 1 5.2981 0.2265 -1.8168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232823684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = 71.011603 kcal Electronic energy + Delta-G solvation = -23422.824095 eV Core-core repulsion = 19904.893485 eV Total energy + Delta-G solvation = -3517.930610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45745 -39.24892 -38.65904 -37.35904 -37.28593 -34.70355 -33.51620 -32.14044 -31.57501 -30.35329 -28.70780 -26.17974 -24.77644 -24.66494 -23.42953 -21.95341 -20.38031 -19.22474 -18.53228 -18.21830 -17.83898 -16.83677 -16.49511 -16.21787 -16.07401 -15.86602 -15.62210 -15.17324 -15.00599 -14.82784 -14.29345 -14.13378 -14.01513 -13.89084 -13.58187 -13.32917 -13.17281 -12.82124 -12.57102 -12.45360 -12.39370 -12.25265 -12.17437 -12.15142 -11.77121 -11.49488 -11.12477 -10.59125 -10.57126 -10.51319 -9.67058 -8.86227 -8.62805 -8.11988 -6.16666 -0.08838 0.52843 0.90123 1.41017 1.45166 1.54737 1.67731 1.87618 1.93750 2.22735 2.45516 2.87596 3.13139 3.23093 3.65403 3.76573 3.91089 3.91886 4.16001 4.30806 4.31445 4.45340 4.50542 4.56126 4.73260 4.78229 4.84410 4.94740 5.17037 5.19242 5.28860 5.46221 5.48554 5.53879 5.69365 5.78281 5.97485 6.21159 6.48923 6.62624 6.70934 6.82236 6.97467 7.01513 7.51849 8.98039 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009489 B = 0.004191 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.955338 B = 6679.293496 C = 7811.433501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.243 3.757 3 C -0.014 4.014 4 C 0.065 3.935 5 N -0.529 5.529 6 C 0.214 3.786 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.945 3.055 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.119 3.881 16 C -0.140 4.140 17 C 0.060 3.940 18 N -0.571 5.571 19 H 0.433 0.567 20 C 0.119 3.881 21 C -0.161 4.161 22 C 0.154 3.846 23 Cl -0.038 7.038 24 N -0.524 5.524 25 C 0.184 3.816 26 C -0.149 4.149 27 H 0.142 0.858 28 H 0.129 0.871 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.017 0.983 32 H -0.034 1.034 33 H 0.259 0.741 34 H 0.041 0.959 35 H 0.108 0.892 36 H 0.191 0.809 37 H 0.159 0.841 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.887 11.445 -9.915 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.074 4.074 3 C -0.055 4.055 4 C -0.064 4.064 5 N -0.253 5.253 6 C 0.088 3.912 7 C -0.549 4.549 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.572 5.572 11 Si 0.772 3.228 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.009 4.009 16 C -0.149 4.149 17 C -0.066 4.066 18 N -0.175 5.175 19 H 0.273 0.727 20 C 0.002 3.998 21 C -0.185 4.185 22 C -0.003 4.003 23 Cl -0.009 7.009 24 N -0.236 5.236 25 C 0.020 3.980 26 C -0.156 4.156 27 H 0.160 0.840 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.035 0.965 32 H -0.016 1.016 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.208 0.792 37 H 0.176 0.824 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.207 10.920 -11.041 17.120 hybrid contribution 1.065 -0.788 1.990 2.391 sum 8.272 10.132 -9.051 15.906 Atomic orbital electron populations 1.81202 1.14923 1.11624 1.10695 1.29691 0.95649 0.90862 0.91162 1.19478 0.78714 1.07715 0.99551 1.21815 0.88817 1.01181 0.94616 1.61877 1.04100 1.17232 1.42043 1.19311 0.94847 0.91884 0.85188 1.21590 1.31189 0.96333 1.05795 0.91960 1.25622 0.95766 1.02063 0.95496 1.70037 1.39213 1.36566 1.11368 0.85694 0.78012 0.81109 0.77988 1.19052 1.21114 1.21105 1.20539 0.90056 0.90380 0.99890 1.20190 0.95312 1.08615 0.90733 1.22180 0.84975 1.02184 0.97297 1.41585 1.09853 1.60511 1.05532 0.72705 1.18222 0.93981 1.00773 0.86797 1.20573 1.01629 1.07518 0.88801 1.21071 0.89839 1.01658 0.87712 1.98368 1.76005 1.93012 1.33544 1.67033 1.07603 1.17754 1.31256 1.22452 1.00684 0.90412 0.84466 1.20222 0.92822 1.06737 0.95866 0.84040 0.85358 0.91999 0.94177 0.96482 1.01636 0.93168 0.94035 0.87379 0.79237 0.82350 0.79540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.24 18.54 20.01 0.37 -15.87 16 2 C 0.24 6.25 15.43 89.44 1.38 7.63 16 3 C -0.01 -0.28 5.75 28.79 0.17 -0.12 16 4 C 0.07 1.86 4.75 86.30 0.41 2.27 16 5 N -0.53 -17.00 4.35 -905.37 -3.93 -20.93 16 6 C 0.21 9.51 4.55 85.56 0.39 9.90 16 7 C -0.51 -26.02 8.23 25.60 0.21 -25.81 16 8 H 0.06 3.14 7.31 -2.91 -0.02 3.12 16 9 C 0.01 0.45 5.46 84.65 0.46 0.91 16 10 N -0.93 -52.27 13.29 21.45 0.28 -51.98 16 11 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 C 0.12 2.91 5.35 85.56 0.46 3.37 16 16 C -0.14 -3.57 5.17 -18.65 -0.10 -3.67 16 17 C 0.06 1.37 11.30 82.98 0.94 2.31 16 18 N -0.57 -11.46 6.05 -187.47 -1.13 -12.59 16 19 H 0.43 5.74 8.96 -92.71 -0.83 4.91 16 20 C 0.12 2.89 7.34 39.28 0.29 3.17 16 21 C -0.16 -3.68 9.88 22.43 0.22 -3.46 16 22 C 0.15 4.00 7.26 84.51 0.61 4.62 16 23 Cl -0.04 -0.86 29.08 -2.72 -0.08 -0.94 16 24 N -0.52 -14.68 10.31 -186.05 -1.92 -16.60 16 25 C 0.18 4.66 11.27 84.97 0.96 5.62 16 26 C -0.15 -3.90 6.39 -20.21 -0.13 -4.03 16 27 H 0.14 1.71 6.90 -2.39 -0.02 1.69 16 28 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.20 6.57 -2.39 -0.02 2.18 16 30 H 0.04 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.02 0.82 7.07 -2.39 -0.02 0.81 16 32 H -0.03 -1.67 8.12 -2.39 -0.02 -1.69 16 33 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.04 1.02 7.99 -2.39 -0.02 1.00 16 35 H 0.11 1.87 6.57 -2.39 -0.02 1.86 16 36 H 0.19 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -68.35 348.73 2.17 -66.18 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.29 Total: 5.13 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 6.27 Total: 2.72 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -6.33 Total: -117.98 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -68.35 2.17 -66.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232823684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.194 kcal (2) G-P(sol) polarization free energy of solvation -68.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds