Wall clock time and date at job start Tue Mar 31 2020 12:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47287 * 284.33931 * 3 2 1 5 5 N 1.46901 * 109.47391 * 176.43752 * 4 3 2 6 6 C 1.46896 * 110.99893 * 58.49208 * 5 4 3 7 7 C 1.50695 * 109.47494 * 66.05098 * 6 5 4 8 8 H 1.08007 * 119.99452 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00349 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99832 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99941 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47169 * 90.00010 * 11 9 7 13 13 H 1.48496 * 109.46892 * 210.00291 * 11 9 7 14 14 H 1.48505 * 109.46859 * 329.99942 * 11 9 7 15 15 C 1.46902 * 110.99648 * 294.53986 * 5 4 3 16 16 C 1.50701 * 109.47190 * 288.00041 * 15 5 4 17 17 C 1.35116 * 125.68730 * 95.28845 * 16 15 5 18 18 N 1.36834 * 107.17626 * 180.02562 * 17 16 15 19 19 C 1.36523 * 132.56010 * 179.97438 * 18 17 16 20 20 C 1.34943 * 120.62945 * 180.02562 * 19 18 17 21 21 C 1.40475 * 120.31033 * 0.02562 * 20 19 18 22 22 C 1.36112 * 119.68367 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.34559 * 180.02562 * 22 21 20 24 24 C 1.37051 * 107.00209 * 0.02562 * 18 17 16 25 25 N 1.32567 * 108.04230 * 359.97438 * 24 18 17 26 26 H 1.08998 * 109.46884 * 164.33337 * 3 2 1 27 27 H 1.09006 * 109.46960 * 44.33569 * 3 2 1 28 28 H 1.08997 * 109.47372 * 56.43526 * 4 3 2 29 29 H 1.09006 * 109.46843 * 296.43588 * 4 3 2 30 30 H 1.09004 * 109.46754 * 186.05061 * 6 5 4 31 31 H 1.09000 * 109.47079 * 306.04635 * 6 5 4 32 32 H 0.97004 * 119.99339 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47175 * 168.00191 * 15 5 4 34 34 H 1.09003 * 109.47261 * 47.99981 * 15 5 4 35 35 H 1.07991 * 126.41467 * 359.97438 * 17 16 15 36 36 H 1.07999 * 119.68537 * 0.05348 * 19 18 17 37 37 H 1.07998 * 119.84319 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.15404 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3563 1.3975 5 7 4.5848 -0.4393 1.3771 6 6 5.1778 0.8307 0.9374 7 6 4.8935 1.8991 1.9614 8 1 4.3283 1.6587 2.8499 9 6 5.3539 3.1836 1.7637 10 7 5.1061 4.1158 2.6577 11 14 6.3307 3.5994 0.2266 12 1 5.4020 4.0325 -0.8480 13 1 7.2848 4.6965 0.5283 14 1 7.0819 2.3995 -0.2221 15 6 5.0373 -1.5522 0.5317 16 6 4.7427 -2.8592 1.2217 17 6 3.6481 -3.6261 1.0232 18 7 3.7665 -4.7182 1.8392 19 6 2.9666 -5.8043 2.0501 20 6 3.3246 -6.7608 2.9321 21 6 4.5286 -6.6509 3.6473 22 6 5.3357 -5.5734 3.4469 23 17 6.8277 -5.4205 4.3210 24 6 4.9471 -4.5824 2.5217 25 7 5.5192 -3.4518 2.1317 26 1 2.9709 0.9903 -0.2775 27 1 2.9717 -0.7343 -0.7182 28 1 2.7041 -1.3179 1.7008 29 1 2.8076 0.4125 2.1050 30 1 6.2555 0.7098 0.8280 31 1 4.7457 1.1211 -0.0203 32 1 5.4304 5.0194 2.5187 33 1 6.1103 -1.4656 0.3606 34 1 4.5132 -1.5195 -0.4235 35 1 2.8322 -3.4162 0.3476 36 1 2.0387 -5.8990 1.5057 37 1 2.6824 -7.6149 3.0887 38 1 4.8129 -7.4182 4.3523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233423935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:18 Heat of formation + Delta-G solvation = 127.521797 kcal Electronic energy + Delta-G solvation = -23375.510973 eV Core-core repulsion = 19860.030829 eV Total energy + Delta-G solvation = -3515.480144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.92487 -38.41767 -37.44374 -36.67811 -35.98344 -33.50071 -32.62006 -31.28737 -30.27803 -29.19046 -27.82701 -25.77261 -23.85411 -22.97827 -22.94671 -20.82403 -19.62776 -18.05417 -17.63491 -17.11627 -16.80672 -16.17897 -16.06241 -15.38987 -15.13726 -14.71720 -14.38222 -14.22460 -13.93921 -13.58964 -13.09245 -13.00531 -12.78636 -12.47819 -12.34874 -12.26236 -12.15083 -11.88937 -11.66591 -11.46232 -11.28494 -11.12693 -10.81250 -10.57983 -10.49245 -10.28639 -9.97667 -9.86120 -9.34079 -8.80091 -8.59663 -7.98024 -7.52744 -6.06652 -4.05084 0.36971 1.04029 1.71254 2.55511 2.73089 2.99350 3.01881 3.25794 3.26690 3.35645 3.36234 3.91694 4.21011 4.23910 4.39517 4.41576 4.57186 4.84255 4.93046 5.11592 5.21745 5.25964 5.32323 5.45797 5.46232 5.56228 5.59054 5.66249 5.82355 5.97042 6.13494 6.15505 6.51835 6.55817 6.73242 6.83084 6.89234 7.51256 7.72683 7.79470 7.85083 7.93361 8.59955 9.02925 9.53713 11.06338 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.003796 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.403725 B = 7374.120446 C = 8885.433186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.075 4.075 4 C 0.071 3.929 5 N -0.508 5.508 6 C 0.157 3.843 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.871 3.129 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.264 1.264 15 C 0.119 3.881 16 C 0.092 3.908 17 C -0.090 4.090 18 N -0.359 5.359 19 C 0.064 3.936 20 C -0.143 4.143 21 C -0.100 4.100 22 C 0.006 3.994 23 Cl -0.027 7.027 24 C 0.215 3.785 25 N -0.448 5.448 26 H 0.122 0.878 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.035 0.965 31 H -0.007 1.007 32 H 0.264 0.736 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -23.574 -3.520 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.060 4.060 5 N -0.230 5.230 6 C 0.032 3.968 7 C -0.549 4.549 8 H 0.100 0.900 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.698 3.302 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.189 1.189 15 C -0.010 4.010 16 C -0.042 4.042 17 C -0.221 4.221 18 N -0.032 5.032 19 C -0.059 4.059 20 C -0.164 4.164 21 C -0.124 4.124 22 C -0.024 4.024 23 Cl 0.002 6.998 24 C -0.029 4.029 25 N -0.167 5.167 26 H 0.140 0.860 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.011 0.989 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.200 0.800 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.705 -23.082 -2.683 23.394 hybrid contribution -0.036 0.260 -1.765 1.784 sum -2.741 -22.822 -4.448 23.413 Atomic orbital electron populations 1.81156 1.13146 1.09810 1.09501 1.29229 0.95218 0.92428 0.92541 1.20254 0.81679 1.06343 1.03425 1.22112 0.88559 1.02074 0.93205 1.62108 1.05443 1.04370 1.51076 1.20344 0.95185 0.86195 0.95099 1.20980 1.35483 0.91688 1.06739 0.90028 1.24884 0.95730 0.96292 0.96239 1.69892 1.46293 1.02544 1.34884 0.86935 0.80721 0.78656 0.83898 1.20313 1.21203 1.18902 1.20540 1.02098 0.85869 0.92498 1.20943 0.90800 0.96701 0.95747 1.22534 1.04975 0.89938 1.04626 1.42755 1.16454 1.15779 1.28246 1.21704 0.96785 0.86787 1.00582 1.20665 0.97923 1.00007 0.97799 1.20954 0.93714 0.97062 1.00702 1.19588 0.91828 0.94448 0.96517 1.98404 1.30386 1.97684 1.73293 1.20357 0.86238 0.96825 0.99497 1.70769 1.29241 1.03558 1.13173 0.85988 0.88233 0.91780 0.88390 0.94708 0.98930 0.92622 0.88954 0.93065 0.79978 0.81681 0.82575 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.83 18.54 42.15 0.78 -7.05 16 2 C 0.22 3.33 15.43 -20.76 -0.32 3.01 16 3 C -0.08 -1.01 5.01 -29.52 -0.15 -1.16 16 4 C 0.07 1.14 4.96 -3.83 -0.02 1.12 16 5 N -0.51 -9.27 4.65 -237.52 -1.10 -10.38 16 6 C 0.16 3.33 3.51 -4.98 -0.02 3.31 16 7 C -0.51 -13.40 9.09 -34.44 -0.31 -13.71 16 8 H 0.08 2.38 7.34 -52.48 -0.39 2.00 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 11 Si 0.87 20.14 27.47 -169.99 -4.67 15.48 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 15 C 0.12 1.77 5.39 -4.97 -0.03 1.74 16 16 C 0.09 1.37 6.01 -82.98 -0.50 0.87 16 17 C -0.09 -1.08 10.63 -16.43 -0.17 -1.25 16 18 N -0.36 -4.26 2.95 -62.63 -0.18 -4.44 16 19 C 0.06 0.51 10.95 -16.63 -0.18 0.32 16 20 C -0.14 -0.94 9.98 -39.91 -0.40 -1.33 16 21 C -0.10 -0.83 9.85 -39.50 -0.39 -1.22 16 22 C 0.01 0.07 6.34 -39.29 -0.25 -0.18 16 23 Cl -0.03 -0.33 28.98 -51.86 -1.50 -1.83 16 24 C 0.21 3.10 7.63 -156.02 -1.19 1.91 16 25 N -0.45 -7.62 11.32 -8.98 -0.10 -7.72 16 26 H 0.12 1.80 6.45 -51.93 -0.33 1.46 16 27 H 0.10 1.02 6.17 -51.93 -0.32 0.70 16 28 H 0.06 0.94 6.54 -51.93 -0.34 0.60 16 29 H 0.10 1.86 6.90 -51.93 -0.36 1.51 16 30 H 0.03 0.77 6.92 -51.93 -0.36 0.41 16 31 H -0.01 -0.13 5.46 -51.93 -0.28 -0.42 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.43 7.81 -51.93 -0.41 1.03 16 34 H 0.05 0.60 5.94 -51.93 -0.31 0.29 16 35 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 38 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -33.56 338.94 -8.88 -42.44 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.95 Total: -1.04 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -4.02 Total: -4.74 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.16 Total: -55.41 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.56 -8.88 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233423935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.958 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds