Wall clock time and date at job start Tue Mar 31 2020 12:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47144 * 118.70747 * 3 2 1 5 5 N 1.46900 * 109.47509 * 179.60400 * 4 3 2 6 6 C 1.46907 * 110.99763 * 297.96187 * 5 4 3 7 7 C 1.50701 * 109.46867 * 292.94527 * 6 5 4 8 8 H 1.08000 * 120.00177 * 354.96450 * 7 6 5 9 9 C 1.37879 * 119.99876 * 174.97103 * 7 6 5 10 10 N 1.31511 * 120.00171 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99818 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46898 * 89.99704 * 11 9 7 13 13 H 1.48497 * 109.46875 * 209.99686 * 11 9 7 14 14 H 1.48498 * 109.46849 * 329.99482 * 11 9 7 15 15 C 1.46904 * 111.00035 * 61.90891 * 5 4 3 16 16 C 1.50700 * 109.46885 * 66.05015 * 15 5 4 17 17 C 1.35068 * 125.68502 * 94.99686 * 16 15 5 18 18 N 1.36912 * 107.17726 * 180.02562 * 17 16 15 19 19 C 1.37092 * 106.99185 * 0.02562 * 18 17 16 20 20 C 1.40910 * 119.64586 * 179.97438 * 19 18 17 21 21 C 1.36066 * 119.35657 * 0.02562 * 20 19 18 22 22 C 1.40392 * 119.70393 * 0.08785 * 21 20 19 23 23 C 1.35163 * 120.28142 * 359.84661 * 22 21 20 24 24 Cl 1.73596 * 119.70886 * 180.09484 * 23 22 21 25 25 N 1.32566 * 108.02970 * 359.97438 * 19 18 17 26 26 H 1.08995 * 109.47381 * 358.70721 * 3 2 1 27 27 H 1.08998 * 109.47062 * 238.71155 * 3 2 1 28 28 H 1.09003 * 109.47397 * 59.60382 * 4 3 2 29 29 H 1.08997 * 109.47692 * 299.60284 * 4 3 2 30 30 H 1.08990 * 109.47346 * 52.94467 * 6 5 4 31 31 H 1.09006 * 109.46825 * 172.95058 * 6 5 4 32 32 H 0.96996 * 120.00130 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47012 * 306.05162 * 15 5 4 34 34 H 1.08998 * 109.46944 * 186.04896 * 15 5 4 35 35 H 1.08003 * 126.40986 * 0.05103 * 17 16 15 36 36 H 1.08002 * 120.32128 * 179.71671 * 20 19 18 37 37 H 1.07998 * 120.15096 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.85510 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6937 -1.2651 5 7 4.5866 0.7028 -1.2606 6 6 5.1048 1.4623 -0.1149 7 6 4.7591 2.9198 -0.2806 8 1 4.2818 3.2619 -1.1869 9 6 5.0524 3.8165 0.7249 10 7 5.6334 3.3999 1.8287 11 14 4.6233 5.6229 0.5197 12 1 3.2540 5.8685 1.0394 13 1 5.5959 6.4517 1.2762 14 1 4.6788 5.9845 -0.9195 15 6 5.1216 -0.6653 -1.2706 16 6 4.7713 -1.3321 -2.5759 17 6 5.5644 -1.3927 -3.6674 18 7 4.8756 -2.0807 -4.6300 19 6 3.6641 -2.4237 -4.0878 20 6 2.7344 -3.1475 -4.8606 21 6 3.0550 -3.4960 -6.1362 22 6 4.3045 -3.1327 -6.6635 23 6 5.1857 -2.4372 -5.9107 24 17 6.7255 -1.9937 -6.5784 25 7 3.6244 -1.9607 -2.8462 26 1 2.9718 -1.0265 0.0232 27 1 2.9711 0.5345 0.8782 28 1 2.7481 1.7189 -1.2919 29 1 2.7604 0.1558 -2.1432 30 1 4.6564 1.0848 0.8040 31 1 6.1878 1.3493 -0.0639 32 1 5.8394 4.0306 2.5362 33 1 4.6881 -1.2309 -0.4458 34 1 6.2053 -0.6324 -1.1588 35 1 6.5565 -0.9766 -3.7629 36 1 1.7785 -3.4273 -4.4429 37 1 2.3523 -4.0511 -6.7399 38 1 4.5617 -3.4084 -7.6755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233600137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:30 Heat of formation + Delta-G solvation = 121.969758 kcal Electronic energy + Delta-G solvation = -23394.060524 eV Core-core repulsion = 19878.339625 eV Total energy + Delta-G solvation = -3515.720899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.89384 -38.36761 -37.47867 -36.78824 -35.74804 -33.67085 -32.67476 -31.18910 -30.06054 -29.00287 -27.42107 -25.46368 -23.80590 -23.13972 -22.91305 -20.95283 -19.53402 -18.17840 -17.32975 -17.10976 -16.34413 -16.22469 -15.92078 -15.35121 -15.07301 -14.57386 -14.31593 -14.04728 -13.80973 -13.48307 -13.00235 -12.89387 -12.81141 -12.42516 -12.14903 -11.94804 -11.90324 -11.71383 -11.52422 -11.41766 -11.16754 -11.14742 -10.95229 -10.73146 -10.60090 -10.11314 -10.09094 -9.88234 -9.30016 -8.80907 -8.46576 -7.93528 -7.35663 -6.06847 -4.07887 0.36040 1.07953 1.14934 2.44156 2.73210 3.24352 3.28135 3.31544 3.32408 3.38479 3.42546 4.05640 4.31868 4.40900 4.51575 4.53459 4.72353 5.05528 5.19197 5.22798 5.29790 5.35552 5.47424 5.61989 5.70025 5.76379 5.82157 5.92928 6.03231 6.12092 6.16263 6.42377 6.57756 6.73897 6.86752 7.16206 7.26056 7.74889 7.82961 7.95190 8.06106 8.10169 8.44627 9.00125 9.57138 11.03426 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013741 B = 0.003615 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.218904 B = 7743.776681 C = 9088.445973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.231 3.769 3 C -0.070 4.070 4 C 0.075 3.925 5 N -0.523 5.523 6 C 0.186 3.814 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.121 3.879 16 C 0.089 3.911 17 C -0.071 4.071 18 N -0.364 5.364 19 C 0.223 3.777 20 C -0.066 4.066 21 C -0.107 4.107 22 C -0.126 4.126 23 C 0.129 3.871 24 Cl -0.021 7.021 25 N -0.472 5.472 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.185 0.815 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -15.716 -16.152 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.056 4.056 5 N -0.246 5.246 6 C 0.062 3.938 7 C -0.546 4.546 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.008 4.008 16 C -0.043 4.043 17 C -0.201 4.201 18 N -0.040 5.040 19 C -0.019 4.019 20 C -0.086 4.086 21 C -0.131 4.131 22 C -0.149 4.149 23 C -0.001 4.001 24 Cl 0.007 6.993 25 N -0.193 5.193 26 H 0.120 0.880 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.202 0.798 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.605 -15.396 -15.877 22.124 hybrid contribution 0.951 0.839 0.073 1.271 sum 0.346 -14.557 -15.804 21.489 Atomic orbital electron populations 1.81102 1.13235 1.10158 1.10052 1.29241 0.95259 0.92034 0.92120 1.20174 0.81636 1.04419 1.04966 1.22021 0.88647 1.01091 0.93800 1.62408 1.05593 1.09714 1.46858 1.19887 0.95596 0.92773 0.85591 1.21117 1.39328 0.91867 1.02318 0.91800 1.24934 0.95279 0.98919 0.95158 1.69931 1.42229 1.34932 1.06558 0.86562 0.78112 0.84926 0.78256 1.20741 1.21299 1.19786 1.20532 1.00530 0.90149 0.89571 1.20955 0.89398 0.97410 0.96502 1.22563 1.01937 1.07117 0.88518 1.42883 1.15519 1.36892 1.08742 1.21002 0.85924 1.03657 0.91352 1.20386 0.98656 0.96565 0.92985 1.20914 0.96047 1.00902 0.95221 1.20609 0.93362 1.00137 1.00749 1.20959 0.91067 1.03240 0.84883 1.98444 1.26253 1.91722 1.82859 1.70729 1.22712 1.15715 1.10106 0.87989 0.86390 0.89488 0.91150 0.97520 0.95054 0.92876 0.93033 0.89200 0.79783 0.82769 0.83336 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.13 18.54 42.15 0.78 -8.35 16 2 C 0.23 4.10 15.43 -20.76 -0.32 3.78 16 3 C -0.07 -1.16 5.05 -29.52 -0.15 -1.30 16 4 C 0.07 1.36 4.93 -3.83 -0.02 1.34 16 5 N -0.52 -9.92 4.69 -237.51 -1.11 -11.04 16 6 C 0.19 4.23 4.53 -4.97 -0.02 4.20 16 7 C -0.51 -13.13 8.39 -34.44 -0.29 -13.42 16 8 H 0.06 1.67 7.38 -52.49 -0.39 1.29 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.01 13.29 55.43 0.74 -24.28 16 11 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.12 1.91 5.28 -4.97 -0.03 1.89 16 16 C 0.09 1.36 5.80 -82.97 -0.48 0.88 16 17 C -0.07 -0.97 11.27 -16.41 -0.18 -1.16 16 18 N -0.36 -4.68 2.95 -59.44 -0.18 -4.85 16 19 C 0.22 3.01 7.81 -156.03 -1.22 1.79 16 20 C -0.07 -0.65 10.11 -39.35 -0.40 -1.05 16 21 C -0.11 -0.78 10.06 -39.55 -0.40 -1.18 16 22 C -0.13 -0.97 9.73 -39.87 -0.39 -1.36 16 23 C 0.13 1.33 7.24 -16.57 -0.12 1.21 16 24 Cl -0.02 -0.20 28.66 -51.86 -1.49 -1.68 16 25 N -0.47 -7.33 10.23 -9.01 -0.09 -7.42 16 26 H 0.10 1.51 6.34 -51.93 -0.33 1.18 16 27 H 0.12 2.09 6.28 -51.93 -0.33 1.76 16 28 H 0.09 1.75 6.98 -51.93 -0.36 1.39 16 29 H 0.07 1.27 6.41 -51.93 -0.33 0.94 16 30 H 0.01 0.17 6.01 -51.93 -0.31 -0.15 16 31 H 0.03 0.76 7.91 -51.93 -0.41 0.35 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.05 0.78 6.07 -51.93 -0.32 0.46 16 34 H 0.09 1.32 7.92 -51.93 -0.41 0.91 16 35 H 0.19 2.22 8.06 -52.48 -0.42 1.79 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -30.67 342.14 -9.34 -40.01 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.01 Total: -0.59 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -4.11 Total: -2.91 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.14 Total: -55.93 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.49 Total: -1.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.67 -9.34 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233600137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.978 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds