Wall clock time and date at job start Tue Mar 31 2020 12:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47144 * 118.70747 * 3 2 1 5 5 N 1.46900 * 109.47509 * 179.60400 * 4 3 2 6 6 C 1.46907 * 110.99763 * 297.96187 * 5 4 3 7 7 C 1.50701 * 109.46867 * 292.94527 * 6 5 4 8 8 H 1.08000 * 120.00177 * 354.96450 * 7 6 5 9 9 C 1.37879 * 119.99876 * 174.97103 * 7 6 5 10 10 N 1.31511 * 120.00171 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99818 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46898 * 89.99704 * 11 9 7 13 13 H 1.48497 * 109.46875 * 209.99686 * 11 9 7 14 14 H 1.48498 * 109.46849 * 329.99482 * 11 9 7 15 15 C 1.46904 * 111.00035 * 61.90891 * 5 4 3 16 16 C 1.50700 * 109.46885 * 66.05015 * 15 5 4 17 17 C 1.35068 * 125.68502 * 94.99686 * 16 15 5 18 18 N 1.36912 * 107.17726 * 180.02562 * 17 16 15 19 19 C 1.37092 * 106.99185 * 0.02562 * 18 17 16 20 20 C 1.40910 * 119.64586 * 179.97438 * 19 18 17 21 21 C 1.36066 * 119.35657 * 0.02562 * 20 19 18 22 22 C 1.40392 * 119.70393 * 0.08785 * 21 20 19 23 23 C 1.35163 * 120.28142 * 359.84661 * 22 21 20 24 24 Cl 1.73596 * 119.70886 * 180.09484 * 23 22 21 25 25 N 1.32566 * 108.02970 * 359.97438 * 19 18 17 26 26 H 1.08995 * 109.47381 * 358.70721 * 3 2 1 27 27 H 1.08998 * 109.47062 * 238.71155 * 3 2 1 28 28 H 1.09003 * 109.47397 * 59.60382 * 4 3 2 29 29 H 1.08997 * 109.47692 * 299.60284 * 4 3 2 30 30 H 1.08990 * 109.47346 * 52.94467 * 6 5 4 31 31 H 1.09006 * 109.46825 * 172.95058 * 6 5 4 32 32 H 0.96996 * 120.00130 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47012 * 306.05162 * 15 5 4 34 34 H 1.08998 * 109.46944 * 186.04896 * 15 5 4 35 35 H 1.08003 * 126.40986 * 0.05103 * 17 16 15 36 36 H 1.08002 * 120.32128 * 179.71671 * 20 19 18 37 37 H 1.07998 * 120.15096 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.85510 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6937 -1.2651 5 7 4.5866 0.7028 -1.2606 6 6 5.1048 1.4623 -0.1149 7 6 4.7591 2.9198 -0.2806 8 1 4.2818 3.2619 -1.1869 9 6 5.0524 3.8165 0.7249 10 7 5.6334 3.3999 1.8287 11 14 4.6233 5.6229 0.5197 12 1 3.2540 5.8685 1.0394 13 1 5.5959 6.4517 1.2762 14 1 4.6788 5.9845 -0.9195 15 6 5.1216 -0.6653 -1.2706 16 6 4.7713 -1.3321 -2.5759 17 6 5.5644 -1.3927 -3.6674 18 7 4.8756 -2.0807 -4.6300 19 6 3.6641 -2.4237 -4.0878 20 6 2.7344 -3.1475 -4.8606 21 6 3.0550 -3.4960 -6.1362 22 6 4.3045 -3.1327 -6.6635 23 6 5.1857 -2.4372 -5.9107 24 17 6.7255 -1.9937 -6.5784 25 7 3.6244 -1.9607 -2.8462 26 1 2.9718 -1.0265 0.0232 27 1 2.9711 0.5345 0.8782 28 1 2.7481 1.7189 -1.2919 29 1 2.7604 0.1558 -2.1432 30 1 4.6564 1.0848 0.8040 31 1 6.1878 1.3493 -0.0639 32 1 5.8394 4.0306 2.5362 33 1 4.6881 -1.2309 -0.4458 34 1 6.2053 -0.6324 -1.1588 35 1 6.5565 -0.9766 -3.7629 36 1 1.7785 -3.4273 -4.4429 37 1 2.3523 -4.0511 -6.7399 38 1 4.5617 -3.4084 -7.6755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233600137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:30 Heat of formation + Delta-G solvation = 104.924879 kcal Electronic energy + Delta-G solvation = -23394.799646 eV Core-core repulsion = 19878.339625 eV Total energy + Delta-G solvation = -3516.460020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.80865 -39.55835 -38.52134 -37.62977 -37.21803 -34.74700 -34.43081 -32.36288 -31.37484 -30.01318 -28.89892 -26.86956 -25.37247 -24.12444 -23.79851 -22.30091 -20.85394 -19.12257 -18.70949 -18.20515 -17.91420 -17.25410 -16.81563 -16.69874 -16.21677 -16.06203 -15.66191 -15.30477 -15.06300 -14.95875 -14.41198 -13.90332 -13.82946 -13.62142 -13.48227 -13.34139 -13.08168 -12.93188 -12.89404 -12.68225 -12.53140 -12.42791 -12.37049 -12.16582 -11.92080 -11.83477 -11.48816 -11.28854 -11.06630 -10.51252 -9.74383 -8.91319 -8.81124 -8.11354 -6.17539 -0.38194 0.27628 0.42515 1.44415 1.46558 1.55524 1.58828 1.74937 1.76353 1.80958 2.44719 2.49154 3.04835 3.19121 3.22998 3.48956 3.64157 3.86256 4.08535 4.13382 4.23650 4.25943 4.37837 4.47728 4.56516 4.73148 4.80671 4.81916 4.96239 5.02752 5.17026 5.21255 5.39009 5.41234 5.45284 5.58741 5.76292 5.96916 6.15881 6.34077 6.59063 6.68034 6.85665 6.98036 7.50946 8.98112 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013741 B = 0.003615 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.218904 B = 7743.776681 C = 9088.445973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.247 3.753 3 C -0.056 4.056 4 C 0.084 3.916 5 N -0.528 5.528 6 C 0.200 3.800 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.949 3.051 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.126 3.874 16 C 0.070 3.930 17 C -0.082 4.082 18 N -0.368 5.368 19 C 0.213 3.787 20 C -0.090 4.090 21 C -0.078 4.078 22 C -0.109 4.109 23 C 0.101 3.899 24 Cl -0.017 7.017 25 N -0.507 5.507 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.074 0.926 30 H -0.001 1.001 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.193 0.807 36 H 0.168 0.832 37 H 0.194 0.806 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -17.068 -18.604 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.070 4.070 3 C -0.097 4.097 4 C -0.046 4.046 5 N -0.251 5.251 6 C 0.074 3.926 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.186 4.186 10 N -0.567 5.567 11 Si 0.776 3.224 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.003 4.003 16 C -0.062 4.062 17 C -0.213 4.213 18 N -0.044 5.044 19 C -0.030 4.030 20 C -0.111 4.111 21 C -0.102 4.102 22 C -0.131 4.131 23 C -0.028 4.028 24 Cl 0.012 6.988 25 N -0.228 5.228 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.016 0.984 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.210 0.790 36 H 0.186 0.814 37 H 0.211 0.789 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.186 -16.759 -18.355 24.883 hybrid contribution 1.122 1.118 0.619 1.700 sum -0.064 -15.641 -17.736 23.648 Atomic orbital electron populations 1.81110 1.13998 1.11190 1.10904 1.29327 0.95246 0.91128 0.91282 1.20059 0.80793 1.05267 1.03600 1.21837 0.88204 0.99845 0.94696 1.62249 1.06023 1.11801 1.45024 1.19556 0.94488 0.91968 0.86552 1.21413 1.38543 0.93610 1.01788 0.92594 1.25608 0.95424 1.02480 0.95052 1.70022 1.43436 1.36052 1.07221 0.85686 0.77765 0.80797 0.78197 1.20598 1.20973 1.19444 1.20485 1.00778 0.88269 0.90732 1.20737 0.90261 0.98674 0.96520 1.22614 1.02287 1.07690 0.88707 1.42936 1.15243 1.36700 1.09504 1.21557 0.86724 1.03566 0.91183 1.20747 0.98914 0.97370 0.94022 1.21481 0.96076 0.98479 0.94160 1.21235 0.92615 0.97459 1.01767 1.21423 0.92233 1.04740 0.84440 1.98444 1.26054 1.91817 1.82503 1.70622 1.23153 1.17300 1.11737 0.85916 0.87343 0.91824 0.90731 0.98374 0.96700 0.92879 0.92416 0.88598 0.79044 0.81435 0.78915 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -19.16 18.54 20.00 0.37 -18.79 16 2 C 0.25 8.75 15.43 89.44 1.38 10.13 16 3 C -0.06 -1.84 5.05 28.79 0.15 -1.69 16 4 C 0.08 3.12 4.93 86.30 0.43 3.54 16 5 N -0.53 -20.45 4.69 -905.35 -4.24 -24.70 16 6 C 0.20 9.31 4.53 85.56 0.39 9.70 16 7 C -0.51 -27.10 8.39 25.60 0.21 -26.89 16 8 H 0.06 2.98 7.38 -2.91 -0.02 2.96 16 9 C 0.01 0.70 5.46 84.66 0.46 1.16 16 10 N -0.93 -52.36 13.29 21.45 0.28 -52.07 16 11 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 15 C 0.13 4.03 5.28 85.56 0.45 4.48 16 16 C 0.07 2.14 5.80 41.57 0.24 2.38 16 17 C -0.08 -2.26 11.27 83.17 0.94 -1.32 16 18 N -0.37 -9.11 2.95 -341.96 -1.01 -10.12 16 19 C 0.21 5.54 7.81 134.09 1.05 6.59 16 20 C -0.09 -1.57 10.11 22.42 0.23 -1.34 16 21 C -0.08 -0.80 10.06 22.29 0.22 -0.57 16 22 C -0.11 -1.25 9.73 22.09 0.21 -1.03 16 23 C 0.10 1.86 7.24 83.26 0.60 2.47 16 24 Cl -0.02 -0.28 28.66 -2.72 -0.08 -0.36 16 25 N -0.51 -15.69 10.23 -182.41 -1.87 -17.55 16 26 H 0.12 3.59 6.34 -2.39 -0.02 3.57 16 27 H 0.11 3.89 6.28 -2.39 -0.01 3.88 16 28 H 0.06 2.62 6.98 -2.39 -0.02 2.61 16 29 H 0.07 2.72 6.41 -2.39 -0.02 2.70 16 30 H 0.00 -0.07 6.01 -2.39 -0.01 -0.08 16 31 H 0.01 0.74 7.91 -2.38 -0.02 0.72 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.06 1.75 6.07 -2.39 -0.01 1.74 16 34 H 0.10 2.89 7.92 -2.39 -0.02 2.87 16 35 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 38 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -67.13 342.14 3.56 -63.58 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.11 Total: 7.05 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.96 Total: 7.61 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -6.46 Total: -123.22 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -67.13 3.56 -63.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233600137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.501 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds