Wall clock time and date at job start Tue Mar 31 2020 12:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76205 * 102.99922 * 2 1 4 4 C 1.38754 * 120.06965 * 0.02562 * 3 2 1 5 5 C 1.38220 * 119.99860 * 179.97438 * 4 3 2 6 6 C 1.38460 * 120.13879 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.93024 * 180.27110 * 6 5 4 8 8 C 1.38474 * 120.13782 * 359.97438 * 6 5 4 9 9 C 1.38493 * 120.00056 * 0.02562 * 8 6 5 10 10 O 1.36003 * 120.06772 * 179.97438 * 9 8 6 11 11 C 1.42904 * 116.99827 * 354.58450 * 10 9 8 12 12 H 1.08991 * 109.47499 * 324.16337 * 11 10 9 13 13 C 1.50707 * 109.46791 * 84.16671 * 11 10 9 14 14 H 1.07999 * 119.99481 * 239.99548 * 13 11 10 15 15 C 1.37874 * 120.00487 * 59.99621 * 13 11 10 16 16 N 1.31519 * 119.99633 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00258 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47170 * 89.99830 * 17 15 13 19 19 H 1.48502 * 109.47080 * 210.00161 * 17 15 13 20 20 H 1.48504 * 109.46873 * 329.99966 * 17 15 13 21 21 C 1.50705 * 109.47166 * 204.15872 * 11 10 9 22 22 C 1.38236 * 119.99983 * 324.73456 * 21 11 10 23 23 C 1.38240 * 119.99866 * 179.80792 * 22 21 11 24 24 C 1.38234 * 119.99521 * 0.39352 * 23 22 21 25 25 C 1.38231 * 120.00605 * 359.85726 * 24 23 22 26 26 C 1.38234 * 119.99903 * 145.00164 * 21 11 10 27 27 H 1.08998 * 109.47113 * 299.99889 * 1 2 3 28 28 H 1.09003 * 109.47153 * 59.99776 * 1 2 3 29 29 H 1.08997 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00598 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.93519 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.99506 * 179.97438 * 8 6 5 33 33 H 0.96999 * 119.99930 * 179.97438 * 16 15 13 34 34 H 1.07999 * 119.99849 * 359.97438 * 22 21 11 35 35 H 1.07994 * 119.99939 * 180.22790 * 23 22 21 36 36 H 1.08001 * 119.99745 * 179.83523 * 24 23 22 37 37 H 1.07995 * 120.00582 * 179.97438 * 25 24 23 38 38 H 1.08003 * 119.99782 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1967 2.6644 0.0005 5 6 1.5093 4.0108 0.0011 6 6 2.8329 4.4172 0.0005 7 9 3.1337 5.7343 0.0066 8 6 3.8491 3.4765 0.0000 9 6 3.5424 2.1259 -0.0005 10 8 4.5393 1.2008 -0.0016 11 6 5.8770 1.6888 -0.1223 12 1 5.8902 2.5524 -0.7870 13 6 6.3888 2.0927 1.2365 14 1 6.6965 3.1122 1.4164 15 6 6.4643 1.1608 2.2498 16 7 6.0891 -0.0806 2.0308 17 14 7.0979 1.6617 3.9341 18 1 5.9620 2.1178 4.7748 19 1 7.7570 0.4987 4.5810 20 1 8.0787 2.7668 3.7854 21 6 6.7578 0.6051 -0.6890 22 6 6.5319 -0.7162 -0.3515 23 6 7.3374 -1.7106 -0.8744 24 6 8.3738 -1.3827 -1.7284 25 6 8.6030 -0.0609 -2.0618 26 6 7.7951 0.9331 -1.5418 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.1635 2.3500 0.0005 31 1 0.7196 4.7474 0.0019 32 1 4.8807 3.7960 -0.0008 33 1 6.1425 -0.7363 2.7436 34 1 5.7245 -0.9719 0.3186 35 1 7.1586 -2.7432 -0.6137 36 1 9.0048 -2.1593 -2.1349 37 1 9.4129 0.1953 -2.7286 38 1 7.9740 1.9658 -1.8024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234218681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:10 Heat of formation + Delta-G solvation = -21.937018 kcal Electronic energy + Delta-G solvation = -24149.261306 eV Core-core repulsion = 20577.131135 eV Total energy + Delta-G solvation = -3572.130171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.49162 -39.35983 -38.09063 -36.38509 -33.15659 -30.82016 -30.61708 -29.78378 -29.07354 -28.61645 -27.03072 -23.59261 -22.42859 -21.97186 -21.35853 -20.16316 -18.12059 -17.04559 -16.62956 -16.34674 -15.57696 -15.38445 -15.14794 -14.87281 -14.55328 -14.17673 -13.91176 -13.84961 -13.51893 -13.41295 -13.29696 -12.69503 -12.52779 -12.44930 -12.22103 -11.93758 -11.61484 -11.28414 -11.23873 -11.06898 -10.87893 -10.58183 -10.50298 -10.12800 -9.76211 -9.47395 -9.33957 -9.06827 -8.87424 -7.94102 -7.82114 -7.57332 -6.66442 -6.12671 -4.49481 1.47216 1.84118 1.94964 2.37314 2.54455 2.89594 3.18272 3.25501 3.27792 4.00987 4.18485 4.22376 4.68999 4.93203 5.06967 5.16166 5.20177 5.21737 5.38473 5.65607 5.74724 5.76646 5.81361 5.88589 6.01287 6.15704 6.21377 6.34282 6.43590 6.52427 6.59718 6.76773 6.80939 6.99454 7.15704 7.25551 7.41894 7.51149 7.67332 7.81772 7.92973 8.19670 8.34376 8.70033 9.27591 10.70190 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.005639 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.380424 B = 4963.978449 C = 5586.655664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.071 6.071 3 C -0.154 4.154 4 C -0.074 4.074 5 C -0.202 4.202 6 C 0.128 3.872 7 F -0.145 7.145 8 C -0.228 4.228 9 C 0.224 3.776 10 O -0.275 6.275 11 C 0.237 3.763 12 H 0.036 0.964 13 C -0.549 4.549 14 H 0.068 0.932 15 C 0.086 3.914 16 N -0.839 5.839 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.045 4.045 22 C -0.044 4.044 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.151 0.849 33 H 0.267 0.733 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 0.549 -4.769 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.170 5.830 3 C -0.268 4.268 4 C -0.098 4.098 5 C -0.223 4.223 6 C 0.107 3.893 7 F -0.124 7.124 8 C -0.249 4.249 9 C 0.169 3.831 10 O -0.185 6.185 11 C 0.183 3.817 12 H 0.054 0.946 13 C -0.585 4.585 14 H 0.086 0.914 15 C -0.122 4.122 16 N -0.473 5.473 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.046 4.046 22 C -0.063 4.063 23 C -0.169 4.169 24 C -0.160 4.160 25 C -0.167 4.167 26 C -0.143 4.143 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.078 0.922 34 H 0.183 0.817 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.676 -0.882 -4.656 8.187 hybrid contribution -0.058 1.863 1.141 2.186 sum -6.735 0.981 -3.514 7.659 Atomic orbital electron populations 1.23714 0.98122 1.06369 1.04816 1.85985 1.02019 1.02112 1.92892 1.21009 0.93711 0.97677 1.14355 1.20602 0.97551 0.91690 0.99997 1.20608 0.94474 0.96246 1.10951 1.17455 0.93345 0.77166 1.01360 1.91447 1.94212 1.32812 1.93908 1.21252 1.00543 0.91930 1.11206 1.18157 0.87742 0.88044 0.89156 1.86386 1.15890 1.32978 1.83273 1.19087 0.76629 0.90318 0.95636 0.94631 1.21350 1.45840 0.96737 0.94527 0.91371 1.25009 0.93419 0.94528 0.99199 1.69800 1.43334 1.02131 1.32049 0.86522 0.79184 0.78496 0.83537 1.20218 1.20784 1.19645 1.19712 0.96156 0.94992 0.93702 1.21896 0.99845 0.91256 0.93302 1.21155 0.97449 0.98977 0.99367 1.20858 0.98940 0.95727 1.00463 1.20698 1.00336 0.93239 1.02385 1.20740 0.96664 0.98273 0.98584 0.90367 0.90450 0.87976 0.85395 0.85492 0.83186 0.92222 0.81694 0.87818 0.88102 0.87800 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.15 101.05 0.92 -0.91 16 2 S -0.07 -1.22 22.05 -107.50 -2.37 -3.59 16 3 C -0.15 -2.87 6.12 -38.98 -0.24 -3.11 16 4 C -0.07 -1.15 9.36 -39.40 -0.37 -1.52 16 5 C -0.20 -3.16 10.02 -39.51 -0.40 -3.55 16 6 C 0.13 2.30 7.30 -39.41 -0.29 2.01 16 7 F -0.15 -2.53 17.26 2.25 0.04 -2.49 16 8 C -0.23 -4.56 8.67 -39.40 -0.34 -4.90 16 9 C 0.22 4.74 6.59 -39.08 -0.26 4.48 16 10 O -0.27 -6.43 7.72 -19.75 -0.15 -6.58 16 11 C 0.24 5.55 2.12 -29.03 -0.06 5.48 16 12 H 0.04 0.79 6.27 -51.93 -0.33 0.47 16 13 C -0.55 -13.83 7.92 -34.44 -0.27 -14.11 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.09 2.20 5.24 -17.82 -0.09 2.10 16 16 N -0.84 -21.47 8.50 55.43 0.47 -20.99 16 17 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 21 C -0.05 -1.04 4.80 -104.62 -0.50 -1.54 16 22 C -0.04 -1.01 7.46 -39.58 -0.30 -1.31 16 23 C -0.15 -3.07 10.05 -39.58 -0.40 -3.47 16 24 C -0.14 -2.64 10.05 -39.59 -0.40 -3.04 16 25 C -0.15 -2.78 10.05 -39.59 -0.40 -3.18 16 26 C -0.12 -2.57 9.68 -39.58 -0.38 -2.95 16 27 H 0.08 0.83 7.75 -51.93 -0.40 0.42 16 28 H 0.08 0.78 7.75 -51.92 -0.40 0.37 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.13 1.57 5.87 -52.49 -0.31 1.27 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.15 3.08 5.67 -52.49 -0.30 2.78 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 34 H 0.17 4.11 5.50 -52.49 -0.29 3.82 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.11 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -26.77 334.30 -9.87 -36.63 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.11 Total: 6.22 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -3.77 Total: -29.51 kcal Atomic # 7 Polarization: -21.47 SS G_CDS: 0.47 Total: -20.99 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.15 Total: -6.58 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.37 Total: -3.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.77 -9.87 -36.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234218681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.697 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds