Wall clock time and date at job start Tue Mar 31 2020 12:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76205 * 102.99922 * 2 1 4 4 C 1.38754 * 120.06965 * 0.02562 * 3 2 1 5 5 C 1.38220 * 119.99860 * 179.97438 * 4 3 2 6 6 C 1.38460 * 120.13879 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.93024 * 180.27110 * 6 5 4 8 8 C 1.38474 * 120.13782 * 359.97438 * 6 5 4 9 9 C 1.38493 * 120.00056 * 0.02562 * 8 6 5 10 10 O 1.36003 * 120.06772 * 179.97438 * 9 8 6 11 11 C 1.42904 * 116.99827 * 354.58450 * 10 9 8 12 12 H 1.08991 * 109.47499 * 324.16337 * 11 10 9 13 13 C 1.50707 * 109.46791 * 84.16671 * 11 10 9 14 14 H 1.07999 * 119.99481 * 239.99548 * 13 11 10 15 15 C 1.37874 * 120.00487 * 59.99621 * 13 11 10 16 16 N 1.31519 * 119.99633 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00258 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47170 * 89.99830 * 17 15 13 19 19 H 1.48502 * 109.47080 * 210.00161 * 17 15 13 20 20 H 1.48504 * 109.46873 * 329.99966 * 17 15 13 21 21 C 1.50705 * 109.47166 * 204.15872 * 11 10 9 22 22 C 1.38236 * 119.99983 * 324.73456 * 21 11 10 23 23 C 1.38240 * 119.99866 * 179.80792 * 22 21 11 24 24 C 1.38234 * 119.99521 * 0.39352 * 23 22 21 25 25 C 1.38231 * 120.00605 * 359.85726 * 24 23 22 26 26 C 1.38234 * 119.99903 * 145.00164 * 21 11 10 27 27 H 1.08998 * 109.47113 * 299.99889 * 1 2 3 28 28 H 1.09003 * 109.47153 * 59.99776 * 1 2 3 29 29 H 1.08997 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00598 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.93519 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.99506 * 179.97438 * 8 6 5 33 33 H 0.96999 * 119.99930 * 179.97438 * 16 15 13 34 34 H 1.07999 * 119.99849 * 359.97438 * 22 21 11 35 35 H 1.07994 * 119.99939 * 180.22790 * 23 22 21 36 36 H 1.08001 * 119.99745 * 179.83523 * 24 23 22 37 37 H 1.07995 * 120.00582 * 179.97438 * 25 24 23 38 38 H 1.08003 * 119.99782 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1967 2.6644 0.0005 5 6 1.5093 4.0108 0.0011 6 6 2.8329 4.4172 0.0005 7 9 3.1337 5.7343 0.0066 8 6 3.8491 3.4765 0.0000 9 6 3.5424 2.1259 -0.0005 10 8 4.5393 1.2008 -0.0016 11 6 5.8770 1.6888 -0.1223 12 1 5.8902 2.5524 -0.7870 13 6 6.3888 2.0927 1.2365 14 1 6.6965 3.1122 1.4164 15 6 6.4643 1.1608 2.2498 16 7 6.0891 -0.0806 2.0308 17 14 7.0979 1.6617 3.9341 18 1 5.9620 2.1178 4.7748 19 1 7.7570 0.4987 4.5810 20 1 8.0787 2.7668 3.7854 21 6 6.7578 0.6051 -0.6890 22 6 6.5319 -0.7162 -0.3515 23 6 7.3374 -1.7106 -0.8744 24 6 8.3738 -1.3827 -1.7284 25 6 8.6030 -0.0609 -2.0618 26 6 7.7951 0.9331 -1.5418 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.1635 2.3500 0.0005 31 1 0.7196 4.7474 0.0019 32 1 4.8807 3.7960 -0.0008 33 1 6.1425 -0.7363 2.7436 34 1 5.7245 -0.9719 0.3186 35 1 7.1586 -2.7432 -0.6137 36 1 9.0048 -2.1593 -2.1349 37 1 9.4129 0.1953 -2.7286 38 1 7.9740 1.9658 -1.8024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234218681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:10 Heat of formation + Delta-G solvation = -32.939709 kcal Electronic energy + Delta-G solvation = -24149.738418 eV Core-core repulsion = 20577.131135 eV Total energy + Delta-G solvation = -3572.607284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.89349 -40.91125 -39.63138 -37.90719 -34.96906 -32.49279 -31.97465 -31.36411 -30.52731 -29.63848 -28.76438 -25.32150 -23.85223 -23.47980 -22.90412 -21.78665 -19.68518 -18.57222 -18.15415 -17.88876 -17.11545 -16.99466 -16.60087 -16.52001 -15.84077 -15.73486 -15.55382 -15.21661 -15.04753 -14.79524 -14.50276 -14.15448 -13.98138 -13.79037 -13.56299 -13.41195 -13.27173 -12.90846 -12.85085 -12.71906 -12.36360 -12.26049 -12.14720 -11.76180 -11.23664 -11.03263 -10.90528 -10.78898 -10.45002 -9.48782 -9.35009 -9.23143 -8.07870 -7.96628 -6.43754 0.06178 0.43707 0.71717 0.77567 0.95758 1.34944 1.37542 1.44888 1.73628 2.33349 2.58128 2.64474 3.15520 3.28423 3.35117 3.83571 4.08296 4.21602 4.26334 4.35567 4.38125 4.38580 4.43442 4.53601 4.56962 4.71726 4.81581 4.93458 4.97805 5.12028 5.16549 5.17071 5.32703 5.41185 5.56281 5.62514 5.82437 5.85852 5.89009 6.09107 6.29689 6.45460 6.58051 6.95337 7.34720 8.78894 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.005639 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.380424 B = 4963.978449 C = 5586.655664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.140 6.140 3 C -0.158 4.158 4 C -0.063 4.063 5 C -0.182 4.182 6 C 0.117 3.883 7 F -0.144 7.144 8 C -0.245 4.245 9 C 0.183 3.817 10 O -0.292 6.292 11 C 0.241 3.759 12 H 0.030 0.970 13 C -0.564 4.564 14 H 0.056 0.944 15 C 0.049 3.951 16 N -0.850 5.850 17 Si 0.944 3.056 18 H -0.279 1.279 19 H -0.278 1.278 20 H -0.272 1.272 21 C -0.073 4.073 22 C -0.065 4.065 23 C -0.159 4.159 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.138 4.138 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.130 0.870 33 H 0.264 0.736 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 0.422 -5.481 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.101 5.899 3 C -0.271 4.271 4 C -0.087 4.087 5 C -0.203 4.203 6 C 0.096 3.904 7 F -0.123 7.123 8 C -0.266 4.266 9 C 0.130 3.870 10 O -0.203 6.203 11 C 0.187 3.813 12 H 0.048 0.952 13 C -0.601 4.601 14 H 0.074 0.926 15 C -0.157 4.157 16 N -0.484 5.484 17 Si 0.769 3.231 18 H -0.205 1.205 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.073 4.073 22 C -0.084 4.084 23 C -0.177 4.177 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.157 4.157 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.188 0.812 31 H 0.185 0.815 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.114 -1.005 -5.375 9.785 hybrid contribution 0.251 1.916 1.277 2.316 sum -7.863 0.911 -4.099 8.914 Atomic orbital electron populations 1.23811 0.92268 1.08352 1.06515 1.86195 1.08520 1.02285 1.92882 1.21256 0.93279 0.98762 1.13786 1.21107 0.98747 0.90991 0.97862 1.21060 0.94097 0.97184 1.07917 1.17593 0.94014 0.76849 1.01982 1.91444 1.94353 1.32547 1.93953 1.21176 1.00430 0.92405 1.12630 1.18569 0.88596 0.88221 0.91646 1.86325 1.15917 1.33622 1.84468 1.18940 0.77157 0.90539 0.94652 0.95230 1.21474 1.46356 0.96227 0.96012 0.92595 1.25564 0.93933 0.94737 1.01483 1.69995 1.43844 1.02377 1.32230 0.85790 0.78501 0.78137 0.80641 1.20507 1.20340 1.19650 1.19876 0.97189 0.95027 0.95226 1.21695 1.00285 0.92113 0.94278 1.21395 0.97562 0.99255 0.99500 1.21275 0.98239 0.96763 0.99081 1.21131 1.00314 0.92812 1.01813 1.21000 0.96521 0.99612 0.98526 0.88847 0.88337 0.85901 0.81165 0.81471 0.85174 0.92613 0.84354 0.86087 0.84247 0.84120 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.15 113.37 1.04 -1.71 16 2 S -0.14 -4.78 22.05 -56.49 -1.25 -6.02 16 3 C -0.16 -5.85 6.12 22.66 0.14 -5.71 16 4 C -0.06 -1.79 9.36 22.39 0.21 -1.58 16 5 C -0.18 -5.18 10.02 22.32 0.22 -4.96 16 6 C 0.12 4.17 7.30 22.38 0.16 4.33 16 7 F -0.14 -4.98 17.26 44.97 0.78 -4.20 16 8 C -0.24 -10.29 8.67 22.39 0.19 -10.10 16 9 C 0.18 8.12 6.59 22.60 0.15 8.27 16 10 O -0.29 -14.57 7.72 -93.58 -0.72 -15.29 16 11 C 0.24 12.06 2.12 29.11 0.06 12.12 16 12 H 0.03 1.45 6.27 -2.39 -0.02 1.43 16 13 C -0.56 -30.15 7.92 25.60 0.20 -29.94 16 14 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.05 2.59 5.24 84.65 0.44 3.03 16 16 N -0.85 -45.57 8.50 21.45 0.18 -45.39 16 17 Si 0.94 42.97 29.54 68.60 2.03 45.00 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C -0.07 -3.49 4.80 -19.86 -0.10 -3.59 16 22 C -0.06 -3.09 7.46 22.27 0.17 -2.92 16 23 C -0.16 -6.42 10.05 22.27 0.22 -6.19 16 24 C -0.14 -4.76 10.05 22.27 0.22 -4.54 16 25 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 26 C -0.14 -5.78 9.68 22.27 0.22 -5.57 16 27 H 0.09 1.58 7.75 -2.39 -0.02 1.56 16 28 H 0.10 1.54 7.75 -2.39 -0.02 1.52 16 29 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.17 3.33 5.87 -2.91 -0.02 3.31 16 31 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.13 5.84 5.67 -2.91 -0.02 5.82 16 33 H 0.26 13.63 8.31 -92.71 -0.77 12.85 16 34 H 0.14 7.35 5.50 -2.91 -0.02 7.33 16 35 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 37 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -62.36 334.30 5.89 -56.47 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 1.09 Total: 23.36 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 3.78 Total: -53.92 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.18 Total: -45.39 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.72 Total: -15.29 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.25 Total: -6.02 kcal Total: -62.36 5.89 -56.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234218681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.531 kcal (2) G-P(sol) polarization free energy of solvation -62.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds