Wall clock time and date at job start Tue Mar 31 2020 12:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99876 * 2 1 4 4 C 1.38962 * 120.03300 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.04474 * 179.97438 * 4 3 2 6 6 C 1.38352 * 120.10873 * 0.29592 * 5 4 3 7 7 F 1.35099 * 119.96991 * 179.70335 * 6 5 4 8 8 C 1.38941 * 120.06310 * 359.45224 * 6 5 4 9 9 O 1.35952 * 120.02400 * 180.29667 * 8 6 5 10 10 C 1.42898 * 117.00244 * 175.06373 * 9 8 6 11 11 H 1.08999 * 109.47340 * 325.84752 * 10 9 8 12 12 C 1.50705 * 109.46799 * 85.84211 * 10 9 8 13 13 H 1.08001 * 119.99523 * 54.73564 * 12 10 9 14 14 C 1.37870 * 119.99975 * 234.72742 * 12 10 9 15 15 N 1.31524 * 120.00059 * 170.31997 * 14 12 10 16 16 Si 1.86801 * 120.00295 * 350.31990 * 14 12 10 17 17 H 1.48499 * 109.47070 * 92.46598 * 16 14 12 18 18 H 1.48504 * 109.46951 * 212.46448 * 16 14 12 19 19 H 1.48498 * 109.47040 * 332.46582 * 16 14 12 20 20 C 1.50699 * 109.47668 * 205.84551 * 10 9 8 21 21 C 1.38237 * 119.99347 * 321.40944 * 20 10 9 22 22 C 1.38242 * 119.99416 * 179.80752 * 21 20 10 23 23 C 1.38234 * 120.00090 * 0.39933 * 22 21 20 24 24 C 1.38238 * 120.00021 * 359.84993 * 23 22 21 25 25 C 1.38232 * 120.00230 * 141.67702 * 20 10 9 26 26 C 1.38552 * 119.95460 * 0.52415 * 8 6 5 27 27 H 1.09007 * 109.47457 * 59.99904 * 1 2 3 28 28 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47486 * 299.99921 * 1 2 3 30 30 H 1.08003 * 119.97789 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.94616 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00049 * 180.02562 * 15 14 12 33 33 H 1.07997 * 120.00615 * 0.02562 * 21 20 10 34 34 H 1.07997 * 119.99675 * 180.22790 * 22 21 20 35 35 H 1.07993 * 120.00168 * 179.83432 * 23 22 21 36 36 H 1.07996 * 119.99978 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.00067 * 359.97438 * 25 20 10 38 38 H 1.08004 * 120.05577 * 179.77699 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1945 2.6652 0.0005 5 6 1.5050 4.0114 0.0011 6 6 2.8272 4.4187 -0.0051 7 9 3.1276 5.7358 -0.0106 8 6 3.8464 3.4744 -0.0004 9 8 5.1454 3.8756 -0.0004 10 6 6.1395 2.8555 0.1142 11 1 5.7664 2.0546 0.7526 12 6 6.4526 2.3035 -1.2527 13 1 6.7542 2.9693 -2.0478 14 6 6.3541 0.9486 -1.4882 15 7 6.4394 0.4868 -2.7167 16 14 6.0993 -0.2311 -0.0625 17 1 4.6459 -0.4644 0.1333 18 1 6.7719 -1.5210 -0.3612 19 1 6.6776 0.3541 1.1737 20 6 7.3905 3.4386 0.7191 21 6 7.7999 4.7112 0.3671 22 6 8.9453 5.2477 0.9251 23 6 9.6857 4.5085 1.8286 24 6 9.2790 3.2339 2.1766 25 6 8.1315 2.6990 1.6217 26 6 3.5381 2.1237 -0.0004 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1616 2.3496 0.0014 31 1 0.7142 4.7470 0.0019 32 1 6.3698 -0.4664 -2.8824 33 1 7.2232 5.2876 -0.3410 34 1 9.2632 6.2433 0.6529 35 1 10.5819 4.9266 2.2624 36 1 9.8576 2.6563 2.8822 37 1 7.8137 1.7032 1.8936 38 1 4.3291 1.3882 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234244266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:17 Heat of formation + Delta-G solvation = -25.140914 kcal Electronic energy + Delta-G solvation = -24073.352574 eV Core-core repulsion = 20501.083471 eV Total energy + Delta-G solvation = -3572.269103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.29182 -39.58909 -38.44767 -36.76297 -33.20634 -31.52033 -30.44135 -30.32080 -29.94359 -28.43479 -27.42709 -23.54845 -22.66486 -22.26540 -21.81450 -20.18428 -18.24224 -17.43620 -16.93384 -16.69687 -15.93181 -15.84431 -15.33454 -14.94499 -14.64970 -14.41865 -14.11723 -13.82148 -13.74726 -13.51425 -13.20501 -12.99415 -12.87557 -12.75546 -12.70313 -12.26722 -11.94565 -11.83246 -11.47645 -11.32065 -11.03528 -10.81009 -10.57372 -10.09162 -9.92421 -9.89182 -9.55047 -9.19183 -8.89637 -8.34270 -8.07779 -7.75184 -7.11535 -6.45022 -4.48495 1.35967 1.64476 1.66245 1.95574 1.99878 2.54626 3.03789 3.06721 3.16908 3.83553 3.87300 4.04864 4.43210 4.69581 4.92619 5.01548 5.03509 5.04465 5.25817 5.43153 5.45806 5.52808 5.60743 5.61983 5.79774 5.87572 5.93440 6.06852 6.19226 6.23015 6.31582 6.47400 6.55773 6.59499 6.64194 6.98099 7.02269 7.08991 7.15083 7.32593 7.59387 7.98325 8.21028 8.69124 9.13182 10.66085 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005675 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.554344 B = 4932.558246 C = 6278.962760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.107 6.107 3 C -0.057 4.057 4 C -0.163 4.163 5 C -0.102 4.102 6 C 0.043 3.957 7 F -0.137 7.137 8 C 0.158 3.842 9 O -0.307 6.307 10 C 0.206 3.794 11 H 0.047 0.953 12 C -0.534 4.534 13 H 0.088 0.912 14 C 0.090 3.910 15 N -0.861 5.861 16 Si 0.837 3.163 17 H -0.245 1.245 18 H -0.276 1.276 19 H -0.255 1.255 20 C -0.037 4.037 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.163 4.163 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.273 0.727 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 1.842 8.112 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.135 5.865 3 C -0.170 4.170 4 C -0.187 4.187 5 C -0.122 4.122 6 C 0.021 3.979 7 F -0.116 7.116 8 C 0.107 3.893 9 O -0.220 6.220 10 C 0.152 3.848 11 H 0.065 0.935 12 C -0.570 4.570 13 H 0.106 0.894 14 C -0.118 4.118 15 N -0.496 5.496 16 Si 0.663 3.337 17 H -0.171 1.171 18 H -0.201 1.201 19 H -0.179 1.179 20 C -0.037 4.037 21 C -0.118 4.118 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.187 4.187 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.828 0.840 7.955 10.517 hybrid contribution -0.699 0.285 0.391 0.850 sum -7.527 1.124 8.346 11.295 Atomic orbital electron populations 1.23699 0.96139 1.06680 1.05471 1.85863 1.04833 1.03315 1.92478 1.21447 0.95949 0.96393 1.03166 1.20683 0.98001 0.91884 1.08113 1.20677 0.93790 0.96357 1.01410 1.16998 0.91867 0.77188 1.11802 1.91450 1.94030 1.31535 1.94559 1.18793 0.85326 0.91343 0.93811 1.86173 1.10876 1.39411 1.85572 1.19523 0.82385 0.85680 0.97162 0.93549 1.21153 1.48063 0.93624 0.94174 0.89355 1.25026 0.93363 0.97892 0.95471 1.69867 1.45765 1.14864 1.19084 0.87625 0.80512 0.81888 0.83666 1.17068 1.20144 1.17943 1.19933 0.96883 0.93708 0.93182 1.20973 0.96137 0.95325 0.99373 1.21065 0.95686 0.99567 0.97921 1.20937 1.00063 0.95203 0.99800 1.20939 0.96808 0.95801 1.00487 1.21016 0.96084 0.99935 0.97440 1.21180 0.95899 0.95349 1.06255 0.89783 0.87728 0.89933 0.85450 0.84491 0.91692 0.85905 0.86764 0.86974 0.86770 0.86390 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.15 101.05 0.92 -0.65 16 2 S -0.11 -1.73 21.99 -107.50 -2.36 -4.10 16 3 C -0.06 -1.03 6.11 -39.08 -0.24 -1.27 16 4 C -0.16 -2.48 9.36 -39.34 -0.37 -2.85 16 5 C -0.10 -1.58 10.01 -39.57 -0.40 -1.98 16 6 C 0.04 0.83 7.31 -39.28 -0.29 0.54 16 7 F -0.14 -2.64 17.11 2.25 0.04 -2.60 16 8 C 0.16 3.44 6.61 -39.21 -0.26 3.18 16 9 O -0.31 -7.23 8.92 -19.59 -0.17 -7.41 16 10 C 0.21 4.90 1.86 -29.03 -0.05 4.85 16 11 H 0.05 1.10 3.52 -51.93 -0.18 0.91 16 12 C -0.53 -14.47 8.70 -34.44 -0.30 -14.77 16 13 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 14 C 0.09 2.43 5.23 -17.82 -0.09 2.33 16 15 N -0.86 -24.69 13.96 55.43 0.77 -23.92 16 16 Si 0.84 19.23 24.76 -169.99 -4.21 15.02 16 17 H -0.25 -5.35 5.96 56.52 0.34 -5.01 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.25 -5.49 4.83 56.52 0.27 -5.22 16 20 C -0.04 -0.80 4.96 -104.62 -0.52 -1.32 16 21 C -0.10 -2.02 9.36 -39.58 -0.37 -2.39 16 22 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 23 C -0.14 -2.26 10.05 -39.58 -0.40 -2.66 16 24 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 25 C -0.13 -2.52 9.67 -39.59 -0.38 -2.90 16 26 C -0.16 -3.50 8.47 -39.23 -0.33 -3.83 16 27 H 0.08 0.81 7.75 -51.92 -0.40 0.41 16 28 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.08 0.75 7.74 -51.93 -0.40 0.34 16 30 H 0.13 1.50 5.87 -52.48 -0.31 1.19 16 31 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.12 2.50 7.74 -52.49 -0.41 2.10 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 2.30 6.18 -52.49 -0.32 1.98 16 38 H 0.15 3.43 1.67 -52.48 -0.09 3.35 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -29.58 328.76 -8.83 -38.41 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -3.98 Total: 8.32 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -3.87 Total: -28.69 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.77 Total: -23.92 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.17 Total: -7.41 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.21 Total: 15.02 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.36 Total: -4.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.58 -8.83 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234244266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.270 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds