Wall clock time and date at job start Tue Mar 31 2020 12:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99876 * 2 1 4 4 C 1.38962 * 120.03300 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.04474 * 179.97438 * 4 3 2 6 6 C 1.38352 * 120.10873 * 0.29592 * 5 4 3 7 7 F 1.35099 * 119.96991 * 179.70335 * 6 5 4 8 8 C 1.38941 * 120.06310 * 359.45224 * 6 5 4 9 9 O 1.35952 * 120.02400 * 180.29667 * 8 6 5 10 10 C 1.42898 * 117.00244 * 175.06373 * 9 8 6 11 11 H 1.08999 * 109.47340 * 325.84752 * 10 9 8 12 12 C 1.50705 * 109.46799 * 85.84211 * 10 9 8 13 13 H 1.08001 * 119.99523 * 54.73564 * 12 10 9 14 14 C 1.37870 * 119.99975 * 234.72742 * 12 10 9 15 15 N 1.31524 * 120.00059 * 170.31997 * 14 12 10 16 16 Si 1.86801 * 120.00295 * 350.31990 * 14 12 10 17 17 H 1.48499 * 109.47070 * 92.46598 * 16 14 12 18 18 H 1.48504 * 109.46951 * 212.46448 * 16 14 12 19 19 H 1.48498 * 109.47040 * 332.46582 * 16 14 12 20 20 C 1.50699 * 109.47668 * 205.84551 * 10 9 8 21 21 C 1.38237 * 119.99347 * 321.40944 * 20 10 9 22 22 C 1.38242 * 119.99416 * 179.80752 * 21 20 10 23 23 C 1.38234 * 120.00090 * 0.39933 * 22 21 20 24 24 C 1.38238 * 120.00021 * 359.84993 * 23 22 21 25 25 C 1.38232 * 120.00230 * 141.67702 * 20 10 9 26 26 C 1.38552 * 119.95460 * 0.52415 * 8 6 5 27 27 H 1.09007 * 109.47457 * 59.99904 * 1 2 3 28 28 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47486 * 299.99921 * 1 2 3 30 30 H 1.08003 * 119.97789 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.94616 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00049 * 180.02562 * 15 14 12 33 33 H 1.07997 * 120.00615 * 0.02562 * 21 20 10 34 34 H 1.07997 * 119.99675 * 180.22790 * 22 21 20 35 35 H 1.07993 * 120.00168 * 179.83432 * 23 22 21 36 36 H 1.07996 * 119.99978 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.00067 * 359.97438 * 25 20 10 38 38 H 1.08004 * 120.05577 * 179.77699 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1945 2.6652 0.0005 5 6 1.5050 4.0114 0.0011 6 6 2.8272 4.4187 -0.0051 7 9 3.1276 5.7358 -0.0106 8 6 3.8464 3.4744 -0.0004 9 8 5.1454 3.8756 -0.0004 10 6 6.1395 2.8555 0.1142 11 1 5.7664 2.0546 0.7526 12 6 6.4526 2.3035 -1.2527 13 1 6.7542 2.9693 -2.0478 14 6 6.3541 0.9486 -1.4882 15 7 6.4394 0.4868 -2.7167 16 14 6.0993 -0.2311 -0.0625 17 1 4.6459 -0.4644 0.1333 18 1 6.7719 -1.5210 -0.3612 19 1 6.6776 0.3541 1.1737 20 6 7.3905 3.4386 0.7191 21 6 7.7999 4.7112 0.3671 22 6 8.9453 5.2477 0.9251 23 6 9.6857 4.5085 1.8286 24 6 9.2790 3.2339 2.1766 25 6 8.1315 2.6990 1.6217 26 6 3.5381 2.1237 -0.0004 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.1616 2.3496 0.0014 31 1 0.7142 4.7470 0.0019 32 1 6.3698 -0.4664 -2.8824 33 1 7.2232 5.2876 -0.3410 34 1 9.2632 6.2433 0.6529 35 1 10.5819 4.9266 2.2624 36 1 9.8576 2.6563 2.8822 37 1 7.8137 1.7032 1.8936 38 1 4.3291 1.3882 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234244266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:16 Heat of formation + Delta-G solvation = -41.698988 kcal Electronic energy + Delta-G solvation = -24074.070586 eV Core-core repulsion = 20501.083471 eV Total energy + Delta-G solvation = -3572.987115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.78600 -41.17687 -39.87967 -38.28444 -35.17294 -33.17734 -31.86153 -31.73657 -31.20187 -29.56430 -29.14052 -25.32536 -24.09981 -23.73250 -23.24340 -21.75091 -19.85101 -19.33660 -18.38560 -18.18351 -17.39426 -17.29845 -16.93460 -16.54657 -16.01476 -15.77870 -15.59718 -15.31710 -15.13944 -14.93499 -14.79218 -14.59023 -14.28533 -14.13059 -13.79954 -13.68117 -13.41887 -13.23846 -13.00554 -12.91672 -12.54902 -12.34006 -12.07631 -11.88828 -11.66271 -11.39803 -11.18877 -10.82018 -10.53028 -9.77700 -9.57705 -9.33145 -8.54256 -8.42759 -6.63243 -0.07303 0.24486 0.46124 0.50446 0.55530 1.17537 1.18677 1.26209 1.52836 2.10538 2.23426 2.43512 2.88194 2.99694 3.26583 3.69333 3.91481 4.01277 4.08530 4.14200 4.23466 4.27982 4.31777 4.32440 4.35302 4.51235 4.65130 4.75603 4.79292 4.83624 5.00134 5.05380 5.09049 5.11959 5.19114 5.20593 5.60357 5.61294 5.64574 5.80749 5.97235 6.17794 6.37019 6.54434 7.04391 8.61379 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.005675 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.554344 B = 4932.558246 C = 6278.962760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.163 6.163 3 C -0.061 4.061 4 C -0.144 4.144 5 C -0.081 4.081 6 C 0.026 3.974 7 F -0.143 7.143 8 C 0.117 3.883 9 O -0.327 6.327 10 C 0.218 3.782 11 H 0.046 0.954 12 C -0.541 4.541 13 H 0.035 0.965 14 C 0.046 3.954 15 N -0.912 5.912 16 Si 0.892 3.108 17 H -0.230 1.230 18 H -0.274 1.274 19 H -0.237 1.237 20 C -0.073 4.073 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.196 4.196 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.275 0.725 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 1.940 10.784 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.078 5.922 3 C -0.174 4.174 4 C -0.167 4.167 5 C -0.101 4.101 6 C 0.004 3.996 7 F -0.122 7.122 8 C 0.068 3.932 9 O -0.241 6.241 10 C 0.164 3.836 11 H 0.063 0.937 12 C -0.578 4.578 13 H 0.053 0.947 14 C -0.156 4.156 15 N -0.549 5.549 16 Si 0.714 3.286 17 H -0.154 1.154 18 H -0.200 1.200 19 H -0.161 1.161 20 C -0.074 4.074 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.163 4.163 26 C -0.220 4.220 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.193 0.807 31 H 0.201 0.799 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.133 0.867 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.603 0.949 10.641 13.716 hybrid contribution -0.277 0.360 -0.452 0.641 sum -8.880 1.309 10.188 13.578 Atomic orbital electron populations 1.23865 0.90089 1.08885 1.07260 1.86018 1.11432 1.02497 1.92217 1.21688 0.95336 0.98064 1.02276 1.21249 0.99443 0.91019 1.05006 1.21202 0.92933 0.97613 0.98377 1.17367 0.92842 0.76595 1.12842 1.91424 1.94268 1.31801 1.94739 1.19250 0.85023 0.92642 0.96317 1.86087 1.12088 1.39191 1.86690 1.19283 0.83327 0.85980 0.95021 0.93665 1.21153 1.48224 0.93351 0.95031 0.94661 1.25736 0.92673 0.99312 0.97928 1.70003 1.48200 1.15338 1.21404 0.86727 0.81540 0.79247 0.81045 1.15423 1.19952 1.16060 1.19996 0.96794 0.95172 0.95401 1.20986 0.97856 0.95173 1.00192 1.21431 0.94183 1.00985 0.97273 1.21470 1.00647 0.94412 0.98099 1.21393 0.95504 0.96469 1.00019 1.21169 0.97400 0.99905 0.97843 1.21167 0.97304 0.94805 1.08695 0.88290 0.85371 0.87656 0.80692 0.79890 0.91542 0.87948 0.83645 0.82393 0.82951 0.86666 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.15 113.37 1.04 -1.12 16 2 S -0.16 -5.06 21.99 -56.49 -1.24 -6.30 16 3 C -0.06 -2.16 6.11 22.59 0.14 -2.02 16 4 C -0.14 -3.88 9.36 22.42 0.21 -3.67 16 5 C -0.08 -2.28 10.01 22.28 0.22 -2.06 16 6 C 0.03 0.99 7.31 22.47 0.16 1.15 16 7 F -0.14 -5.62 17.11 44.97 0.77 -4.85 16 8 C 0.12 5.36 6.61 22.51 0.15 5.51 16 9 O -0.33 -16.64 8.92 -93.00 -0.83 -17.47 16 10 C 0.22 11.13 1.86 29.10 0.05 11.19 16 11 H 0.05 2.27 3.52 -2.39 -0.01 2.26 16 12 C -0.54 -31.95 8.70 25.60 0.22 -31.73 16 13 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 14 C 0.05 2.67 5.23 84.65 0.44 3.11 16 15 N -0.91 -55.99 13.96 21.45 0.30 -55.69 16 16 Si 0.89 41.73 24.76 68.60 1.70 43.42 16 17 H -0.23 -10.13 5.96 99.48 0.59 -9.54 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.24 -10.24 4.83 99.48 0.48 -9.75 16 20 C -0.07 -3.37 4.96 -19.87 -0.10 -3.47 16 21 C -0.12 -5.25 9.36 22.27 0.21 -5.04 16 22 C -0.12 -3.97 10.05 22.27 0.22 -3.75 16 23 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 24 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 25 C -0.15 -5.79 9.67 22.27 0.22 -5.58 16 26 C -0.20 -8.71 8.47 22.50 0.19 -8.51 16 27 H 0.10 1.38 7.75 -2.39 -0.02 1.36 16 28 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.30 7.74 -2.39 -0.02 1.28 16 30 H 0.18 3.03 5.87 -2.91 -0.02 3.02 16 31 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.10 4.60 7.74 -2.91 -0.02 4.58 16 34 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.12 4.53 6.18 -2.91 -0.02 4.51 16 38 H 0.13 6.20 1.67 -2.91 0.00 6.20 16 Total: -1.00 -74.36 328.76 5.29 -69.07 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.77 Total: 24.65 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 3.83 Total: -52.84 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.30 Total: -55.69 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.83 Total: -17.47 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.77 Total: -4.85 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.70 Total: 43.42 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -1.24 Total: -6.30 kcal Total: -74.36 5.29 -69.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234244266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.375 kcal (2) G-P(sol) polarization free energy of solvation -74.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds