Wall clock time and date at job start Tue Mar 31 2020 12:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99728 * 2 1 4 4 C 1.38992 * 120.04404 * 0.02562 * 3 2 1 5 5 C 1.38314 * 120.00634 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.95757 * 179.97438 * 5 4 3 7 7 C 1.38457 * 120.08603 * 0.02562 * 5 4 3 8 8 C 1.38741 * 120.08064 * 359.97438 * 7 5 4 9 9 O 1.35895 * 120.00757 * 180.02562 * 8 7 5 10 10 C 1.42898 * 116.99495 * 4.64742 * 9 8 7 11 11 H 1.08996 * 109.47546 * 39.40862 * 10 9 8 12 12 C 1.50702 * 109.47307 * 279.40025 * 10 9 8 13 13 H 1.08006 * 119.99503 * 125.50479 * 12 10 9 14 14 C 1.37875 * 120.00082 * 305.50676 * 12 10 9 15 15 N 1.31507 * 120.00164 * 9.41252 * 14 12 10 16 16 Si 1.86804 * 119.99657 * 189.41272 * 14 12 10 17 17 H 1.48504 * 109.46723 * 90.00170 * 16 14 12 18 18 H 1.48501 * 109.46707 * 210.00008 * 16 14 12 19 19 H 1.48491 * 109.47128 * 330.00081 * 16 14 12 20 20 C 1.50703 * 109.46932 * 159.40397 * 10 9 8 21 21 C 1.38236 * 120.00050 * 31.13056 * 20 10 9 22 22 C 1.38236 * 120.00291 * 179.80871 * 21 20 10 23 23 C 1.38241 * 119.99749 * 0.40266 * 22 21 20 24 24 C 1.38233 * 119.99711 * 359.84860 * 23 22 21 25 25 C 1.38233 * 120.00605 * 359.96525 * 24 23 22 26 26 C 1.38615 * 119.99192 * 359.97438 * 8 7 5 27 27 H 1.09005 * 109.47174 * 299.99937 * 1 2 3 28 28 H 1.08997 * 109.47285 * 60.00251 * 1 2 3 29 29 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99436 * 0.25658 * 4 3 2 31 31 H 1.08009 * 119.96365 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00197 * 179.97438 * 15 14 12 33 33 H 1.08005 * 119.99958 * 0.02562 * 21 20 10 34 34 H 1.08001 * 120.00450 * 180.23107 * 22 21 20 35 35 H 1.07998 * 119.99763 * 179.83852 * 23 22 21 36 36 H 1.08001 * 119.99509 * 179.97438 * 24 23 22 37 37 H 1.07990 * 120.00280 * 179.97438 * 25 24 23 38 38 H 1.08003 * 120.04074 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1944 2.6655 0.0005 5 6 1.5064 4.0130 0.0011 6 9 0.5182 4.9343 0.0011 7 6 2.8301 4.4190 0.0005 8 6 3.8470 3.4751 0.0000 9 8 5.1457 3.8752 0.0000 10 6 5.3919 5.2790 0.1037 11 1 4.6883 5.7202 0.8097 12 6 5.2163 5.9211 -1.2483 13 1 4.5382 6.7534 -1.3668 14 6 5.9212 5.4461 -2.3339 15 7 6.6015 4.3249 -2.2366 16 14 5.9097 6.3953 -3.9428 17 1 7.0332 7.3664 -3.9525 18 1 6.0635 5.4489 -5.0768 19 1 4.6235 7.1249 -4.0779 20 6 6.8002 5.5075 0.5892 21 6 7.7979 4.6075 0.2641 22 6 9.0905 4.8191 0.7061 23 6 9.3837 5.9263 1.4801 24 6 8.3850 6.8235 1.8095 25 6 7.0932 6.6140 1.3643 26 6 3.5381 2.1238 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.1614 2.3504 0.0051 31 1 3.0715 5.4718 0.0014 32 1 7.0971 3.9905 -3.0005 33 1 7.5681 3.7409 -0.3381 34 1 9.8707 4.1180 0.4490 35 1 10.3931 6.0902 1.8276 36 1 8.6141 7.6882 2.4145 37 1 6.3129 7.3146 1.6220 38 1 4.3290 1.3884 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234295866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:07 Heat of formation + Delta-G solvation = -29.410728 kcal Electronic energy + Delta-G solvation = -23794.303312 eV Core-core repulsion = 20221.849056 eV Total energy + Delta-G solvation = -3572.454256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.50387 -39.34016 -38.17198 -36.38078 -33.08511 -30.97026 -30.33220 -29.96902 -29.73565 -28.32409 -27.05256 -23.64858 -22.47301 -22.00355 -21.42921 -20.25363 -18.31614 -16.78307 -16.48780 -16.03782 -15.59027 -15.55381 -15.38660 -15.16616 -14.79822 -14.28578 -13.85832 -13.84558 -13.72620 -13.59059 -13.31298 -12.75298 -12.52189 -12.41808 -12.28266 -11.97735 -11.76159 -11.37465 -11.13998 -11.05109 -11.01944 -10.63245 -10.57429 -10.20082 -10.19101 -9.64668 -9.49254 -8.98041 -8.78048 -8.02792 -7.73551 -7.48517 -7.21680 -6.26119 -4.46380 1.55269 1.60485 1.82775 2.24505 2.36161 2.47661 3.17758 3.25348 3.27465 4.09280 4.21382 4.31096 4.73384 4.77579 5.00455 5.01822 5.04621 5.28452 5.56230 5.59297 5.64638 5.71154 5.73755 5.77548 5.87158 6.12066 6.28777 6.32184 6.46539 6.53797 6.60911 6.62450 6.83829 6.95275 7.03341 7.21871 7.30329 7.45670 7.60373 7.73031 7.77403 7.99296 8.35494 8.72262 9.27387 10.71110 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.004356 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.767021 B = 6426.026454 C = 7030.535428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.112 6.112 3 C -0.027 4.027 4 C -0.235 4.235 5 C 0.147 3.853 6 F -0.145 7.145 7 C -0.240 4.240 8 C 0.226 3.774 9 O -0.275 6.275 10 C 0.238 3.762 11 H 0.036 0.964 12 C -0.558 4.558 13 H 0.069 0.931 14 C 0.089 3.911 15 N -0.837 5.837 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.036 4.036 21 C -0.070 4.070 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.161 4.161 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.266 0.734 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -4.473 5.359 8.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.129 5.871 3 C -0.139 4.139 4 C -0.259 4.259 5 C 0.126 3.874 6 F -0.123 7.123 7 C -0.261 4.261 8 C 0.174 3.826 9 O -0.186 6.186 10 C 0.184 3.816 11 H 0.054 0.946 12 C -0.594 4.594 13 H 0.087 0.913 14 C -0.121 4.121 15 N -0.470 5.470 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.037 4.037 21 C -0.088 4.088 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.144 4.144 26 C -0.186 4.186 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.548 -5.732 5.246 9.004 hybrid contribution -0.975 2.195 -1.170 2.671 sum -5.524 -3.537 4.077 7.723 Atomic orbital electron populations 1.23652 0.95416 1.06611 1.05740 1.85374 1.05657 1.03186 1.92893 1.20944 0.95295 0.95606 1.02088 1.20620 0.98809 0.91309 1.15204 1.17229 0.84657 0.85357 1.00117 1.91450 1.61035 1.65969 1.93881 1.21404 0.90687 1.02249 1.11795 1.18499 0.85162 0.91331 0.87599 1.86287 1.18985 1.29718 1.83565 1.19047 0.89788 0.76866 0.95891 0.94606 1.21311 1.27479 1.18389 0.92190 0.91289 1.24956 0.93974 0.94116 0.99012 1.69937 1.28496 1.17650 1.30897 0.86596 0.78863 0.80064 0.82691 1.20213 1.20864 1.19586 1.19863 0.96414 0.94032 0.93351 1.21571 0.91033 1.00663 0.95567 1.21153 0.97209 0.97883 0.99632 1.20877 0.98170 0.96209 1.01115 1.20789 0.93378 0.99398 1.02055 1.20760 0.96386 0.97990 0.99243 1.19920 0.94272 0.94174 1.10189 0.89825 0.89778 0.87708 0.85722 0.83315 0.92362 0.83027 0.87531 0.87765 0.87475 0.87238 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.15 101.05 0.92 -0.48 16 2 S -0.11 -1.54 22.56 -107.50 -2.43 -3.96 16 3 C -0.03 -0.45 6.11 -39.07 -0.24 -0.69 16 4 C -0.23 -3.89 9.34 -39.27 -0.37 -4.26 16 5 C 0.15 2.71 7.29 -39.47 -0.29 2.43 16 6 F -0.14 -2.58 17.26 2.25 0.04 -2.54 16 7 C -0.24 -4.86 8.60 -39.31 -0.34 -5.20 16 8 C 0.23 4.80 6.55 -39.26 -0.26 4.55 16 9 O -0.28 -6.41 7.69 -19.41 -0.15 -6.56 16 10 C 0.24 5.48 2.12 -29.03 -0.06 5.42 16 11 H 0.04 0.78 6.49 -51.93 -0.34 0.45 16 12 C -0.56 -13.92 7.55 -34.44 -0.26 -14.18 16 13 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 14 C 0.09 2.25 5.21 -17.82 -0.09 2.15 16 15 N -0.84 -21.46 9.43 55.43 0.52 -20.93 16 16 Si 0.89 20.20 29.55 -169.99 -5.02 15.18 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.04 -0.80 4.84 -104.62 -0.51 -1.31 16 21 C -0.07 -1.55 8.12 -39.58 -0.32 -1.87 16 22 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 24 C -0.14 -2.46 10.05 -39.59 -0.40 -2.86 16 25 C -0.13 -2.49 9.70 -39.58 -0.38 -2.87 16 26 C -0.16 -3.09 9.73 -39.21 -0.38 -3.47 16 27 H 0.08 0.76 7.74 -51.92 -0.40 0.36 16 28 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 29 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.12 1.73 5.87 -52.49 -0.31 1.42 16 31 H 0.15 3.09 5.59 -52.48 -0.29 2.80 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.15 3.64 5.86 -52.48 -0.31 3.33 16 34 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.97 8.06 -52.49 -0.42 1.54 16 38 H 0.13 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -26.31 336.13 -9.87 -36.18 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.13 Total: 6.29 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -3.76 Total: -28.72 kcal Atomic # 7 Polarization: -21.46 SS G_CDS: 0.52 Total: -20.93 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.15 Total: -6.56 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.43 Total: -3.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.31 -9.87 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234295866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.769 kcal (2) G-P(sol) polarization free energy of solvation -26.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds